Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations[C][W]
Identifieur interne : 000355 ( Main/Merge ); précédent : 000354; suivant : 000356Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations[C][W]
Auteurs : Steven R. Eichten [États-Unis] ; Roman Briskine [États-Unis] ; Jawon Song ; Qing Li [États-Unis] ; Ruth Swanson-Wagner [États-Unis] ; Peter J. Hermanson [États-Unis] ; Amanda J. Waters [États-Unis] ; Evan Starr [États-Unis] ; Patrick T. West [États-Unis] ; Peter Tiffin [États-Unis] ; Chad L. Myers [États-Unis] ; Matthew W. Vaughn ; Nathan M. Springer [États-Unis]Source :
- The Plant Cell [ 1040-4651 ] ; 2013.
Abstract
This study examines the DNA methylation patterns of a diverse set of maize lines to show that many methylation variants are associated with local genetic variation, some of which may be due to specific transposon insertion variation. These results provide insight into how DNA methylation varies within a crop and highlight the complex nature of genetic and epigenetic influences on DNA methylation.
Url:
DOI: 10.1105/tpc.113.114793
PubMed: 23922207
PubMed Central: 3784580
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000380
- to stream Pmc, to step Curation: 000380
- to stream Pmc, to step Checkpoint: 000333
- to stream Ncbi, to step Merge: 000431
- to stream Ncbi, to step Curation: 000431
- to stream Ncbi, to step Checkpoint: 000431
Links to Exploration step
PMC:3784580Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations<xref ref-type="author-notes" rid="fn1"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[W]</sup></xref></title><author><name sortKey="Eichten, Steven R" sort="Eichten, Steven R" uniqKey="Eichten S" first="Steven R." last="Eichten">Steven R. Eichten</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Briskine, Roman" sort="Briskine, Roman" uniqKey="Briskine R" first="Roman" last="Briskine">Roman Briskine</name><affiliation wicri:level="2"><nlm:aff id="aff2">Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Department of Computer Science and Engineering, University of Minnesota, Minneapolis</wicri:cityArea></affiliation></author><author><name sortKey="Song, Jawon" sort="Song, Jawon" uniqKey="Song J" first="Jawon" last="Song">Jawon Song</name><affiliation><nlm:aff id="aff3">Texas Advanced Computing Center, University of Texas, Austin Texas 78758</nlm:aff><wicri:noCountry code="subfield">Austin Texas 78758</wicri:noCountry></affiliation></author><author><name sortKey="Li, Qing" sort="Li, Qing" uniqKey="Li Q" first="Qing" last="Li">Qing Li</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Swanson Wagner, Ruth" sort="Swanson Wagner, Ruth" uniqKey="Swanson Wagner R" first="Ruth" last="Swanson-Wagner">Ruth Swanson-Wagner</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Hermanson, Peter J" sort="Hermanson, Peter J" uniqKey="Hermanson P" first="Peter J." last="Hermanson">Peter J. Hermanson</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Waters, Amanda J" sort="Waters, Amanda J" uniqKey="Waters A" first="Amanda J." last="Waters">Amanda J. Waters</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Starr, Evan" sort="Starr, Evan" uniqKey="Starr E" first="Evan" last="Starr">Evan Starr</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="West, Patrick T" sort="West, Patrick T" uniqKey="West P" first="Patrick T." last="West">Patrick T. West</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Tiffin, Peter" sort="Tiffin, Peter" uniqKey="Tiffin P" first="Peter" last="Tiffin">Peter Tiffin</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Myers, Chad L" sort="Myers, Chad L" uniqKey="Myers C" first="Chad L." last="Myers">Chad L. Myers</name><affiliation wicri:level="2"><nlm:aff id="aff2">Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Department of Computer Science and Engineering, University of Minnesota, Minneapolis</wicri:cityArea></affiliation></author><author><name sortKey="Vaughn, Matthew W" sort="Vaughn, Matthew W" uniqKey="Vaughn M" first="Matthew W." last="Vaughn">Matthew W. Vaughn</name><affiliation><nlm:aff id="aff3">Texas Advanced Computing Center, University of Texas, Austin Texas 78758</nlm:aff><wicri:noCountry code="subfield">Austin Texas 78758</wicri:noCountry></affiliation></author><author><name sortKey="Springer, Nathan M" sort="Springer, Nathan M" uniqKey="Springer N" first="Nathan M." last="Springer">Nathan M. Springer</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23922207</idno><idno type="pmc">3784580</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784580</idno><idno type="RBID">PMC:3784580</idno><idno type="doi">10.1105/tpc.113.114793</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000380</idno><idno type="wicri:Area/Pmc/Curation">000380</idno><idno type="wicri:Area/Pmc/Checkpoint">000333</idno><idno type="wicri:Area/Ncbi/Merge">000431</idno><idno type="wicri:Area/Ncbi/Curation">000431</idno><idno type="wicri:Area/Ncbi/Checkpoint">000431</idno><idno type="wicri:doubleKey">1040-4651:2013:Eichten S:epigenetic:and:genetic</idno><idno type="wicri:Area/Main/Merge">000355</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations<xref ref-type="author-notes" rid="fn1"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[W]</sup></xref></title><author><name sortKey="Eichten, Steven R" sort="Eichten, Steven R" uniqKey="Eichten S" first="Steven R." last="Eichten">Steven R. Eichten</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Briskine, Roman" sort="Briskine, Roman" uniqKey="Briskine R" first="Roman" last="Briskine">Roman Briskine</name><affiliation wicri:level="2"><nlm:aff id="aff2">Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Department of Computer Science and Engineering, University of Minnesota, Minneapolis</wicri:cityArea></affiliation></author><author><name sortKey="Song, Jawon" sort="Song, Jawon" uniqKey="Song J" first="Jawon" last="Song">Jawon Song</name><affiliation><nlm:aff id="aff3">Texas Advanced Computing Center, University of Texas, Austin Texas 78758</nlm:aff><wicri:noCountry code="subfield">Austin Texas 78758</wicri:noCountry></affiliation></author><author><name sortKey="Li, Qing" sort="Li, Qing" uniqKey="Li Q" first="Qing" last="Li">Qing Li</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Swanson Wagner, Ruth" sort="Swanson Wagner, Ruth" uniqKey="Swanson Wagner R" first="Ruth" last="Swanson-Wagner">Ruth Swanson-Wagner</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Hermanson, Peter J" sort="Hermanson, Peter J" uniqKey="Hermanson P" first="Peter J." last="Hermanson">Peter J. Hermanson</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Waters, Amanda J" sort="Waters, Amanda J" uniqKey="Waters A" first="Amanda J." last="Waters">Amanda J. Waters</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Starr, Evan" sort="Starr, Evan" uniqKey="Starr E" first="Evan" last="Starr">Evan Starr</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="West, Patrick T" sort="West, Patrick T" uniqKey="West P" first="Patrick T." last="West">Patrick T. West</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Tiffin, Peter" sort="Tiffin, Peter" uniqKey="Tiffin P" first="Peter" last="Tiffin">Peter Tiffin</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author><author><name sortKey="Myers, Chad L" sort="Myers, Chad L" uniqKey="Myers C" first="Chad L." last="Myers">Chad L. Myers</name><affiliation wicri:level="2"><nlm:aff id="aff2">Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Department of Computer Science and Engineering, University of Minnesota, Minneapolis</wicri:cityArea></affiliation></author><author><name sortKey="Vaughn, Matthew W" sort="Vaughn, Matthew W" uniqKey="Vaughn M" first="Matthew W." last="Vaughn">Matthew W. Vaughn</name><affiliation><nlm:aff id="aff3">Texas Advanced Computing Center, University of Texas, Austin Texas 78758</nlm:aff><wicri:noCountry code="subfield">Austin Texas 78758</wicri:noCountry></affiliation></author><author><name sortKey="Springer, Nathan M" sort="Springer, Nathan M" uniqKey="Springer N" first="Nathan M." last="Springer">Nathan M. Springer</name><affiliation wicri:level="2"><nlm:aff id="aff1">Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul</wicri:cityArea></affiliation></author></analytic><series><title level="j">The Plant Cell</title><idno type="ISSN">1040-4651</idno><idno type="eISSN">1532-298X</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>This study examines the DNA methylation patterns of a diverse set of maize lines to show that many methylation variants are associated with local genetic variation, some of which may be due to specific transposon insertion variation. These results provide insight into how DNA methylation varies within a crop and highlight the complex nature of genetic and epigenetic influences on DNA methylation.</p></div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000355 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 000355 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Ticri/CIDE
|area= CyberinfraV1
|flux= Main
|étape= Merge
|type= RBID
|clé= PMC:3784580
|texte= Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations[C][W]
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i -Sk "pubmed:23922207" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd \
| NlmPubMed2Wicri -a CyberinfraV1
| This area was generated with Dilib version V0.6.25. |  |