JBrowse: a dynamic web platform for genome visualization and analysis
Identifieur interne : 000025 ( Main/Merge ); précédent : 000024; suivant : 000026JBrowse: a dynamic web platform for genome visualization and analysis
Auteurs : Robert Buels [États-Unis] ; Eric Yao [États-Unis] ; Colin M. Diesh ; Richard D. Hayes [États-Unis] ; Monica Munoz-Torres [États-Unis] ; Gregg Helt [États-Unis] ; David M. Goodstein [États-Unis] ; Christine G. Elsik ; Suzanna E. Lewis [États-Unis] ; Lincoln Stein ; Ian H. Holmes [États-Unis]Source :
- Genome Biology [ 1474-7596 ] ; 2016.
Abstract
JBrowse is a fast and full-featured genome browser built with JavaScript and HTML5. It is easily embedded into websites or apps but can also be served as a standalone web page.
Overall improvements to speed and scalability are accompanied by specific enhancements that support complex interactive queries on large track sets. Analysis functions can readily be added using the plugin framework; most visual aspects of tracks can also be customized, along with clicks, mouseovers, menus, and popup boxes. JBrowse can also be used to browse local annotation files offline and to generate high-resolution figures for publication.
JBrowse is a mature web application suitable for genome visualization and analysis.
Url:
DOI: 10.1186/s13059-016-0924-1
PubMed: 27072794
PubMed Central: 4830012
Links toward previous steps (curation, corpus...)
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- to stream Pmc, to step Checkpoint: 000023
- to stream Ncbi, to step Merge: 000724
- to stream Ncbi, to step Curation: 000724
- to stream Ncbi, to step Checkpoint: 000724
Links to Exploration step
PMC:4830012Le document en format XML
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<series><title level="j">Genome Biology</title>
<idno type="ISSN">1474-7596</idno>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>JBrowse is a fast and full-featured genome browser built with JavaScript and HTML5. It is easily embedded into websites or apps but can also be served as a standalone web page.</p>
</sec>
<sec><title>Results</title>
<p>Overall improvements to speed and scalability are accompanied by specific enhancements that support complex interactive queries on large track sets. Analysis functions can readily be added using the plugin framework; most visual aspects of tracks can also be customized, along with clicks, mouseovers, menus, and popup boxes. JBrowse can also be used to browse local annotation files offline and to generate high-resolution figures for publication.</p>
</sec>
<sec><title>Conclusions</title>
<p>JBrowse is a mature web application suitable for genome visualization and analysis.</p>
</sec>
</div>
</front>
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</TEI>
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