xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud[OPEN]
Identifieur interne : 000002 ( Main/Merge ); précédent : 000001; suivant : 000003xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud[OPEN]
Auteurs : Jon Duvick [États-Unis] ; Daniel S. Standage [États-Unis] ; Nirav Merchant [États-Unis] ; Volker P. Brendel [États-Unis]Source :
- The Plant Cell [ 1040-4651 ] ; 2016.
Abstract
xGDBvm is a novel tool for scalable, reproducible, and expandable genome annotation via Web-based interfaces that seamlessly integrate background cloud-based data storage and high-performance computer resources.
Url:
DOI: 10.1105/tpc.15.00933
PubMed: 27020957
PubMed Central: 4863385
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000102
- to stream Pmc, to step Curation: 000102
- to stream Pmc, to step Checkpoint: 000001
- to stream Ncbi, to step Merge: 000722
- to stream Ncbi, to step Curation: 000722
- to stream Ncbi, to step Checkpoint: 000722
Links to Exploration step
PMC:4863385Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud<xref ref-type="fn" rid="fn1"><sup>[OPEN]</sup>
</xref>
</title>
<author><name sortKey="Duvick, Jon" sort="Duvick, Jon" uniqKey="Duvick J" first="Jon" last="Duvick">Jon Duvick</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Iowa</region>
</placeName>
<wicri:cityArea>Department of Genetics, Development and Cell Biology, Iowa State University, Ames</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Standage, Daniel S" sort="Standage, Daniel S" uniqKey="Standage D" first="Daniel S." last="Standage">Daniel S. Standage</name>
<affiliation wicri:level="2"><nlm:aff id="aff2">Department of Biology, Indiana University, Bloomington, Indiana 47405</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Indiana</region>
</placeName>
<wicri:cityArea>Department of Biology, Indiana University, Bloomington</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name>
<affiliation wicri:level="2"><nlm:aff id="aff3">Bio Computing Facility, University of Arizona, Tucson, Arizona 85721</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Arizona</region>
</placeName>
<wicri:cityArea>Bio Computing Facility, University of Arizona, Tucson</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Brendel, Volker P" sort="Brendel, Volker P" uniqKey="Brendel V" first="Volker P." last="Brendel">Volker P. Brendel</name>
<affiliation wicri:level="2"><nlm:aff id="aff4">Department of Biology and School of Informatics and Computing, Indiana University, Bloomington, Indiana 47405</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Indiana</region>
</placeName>
<wicri:cityArea>Department of Biology and School of Informatics and Computing, Indiana University, Bloomington</wicri:cityArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">27020957</idno>
<idno type="pmc">4863385</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863385</idno>
<idno type="RBID">PMC:4863385</idno>
<idno type="doi">10.1105/tpc.15.00933</idno>
<date when="2016">2016</date>
<idno type="wicri:Area/Pmc/Corpus">000102</idno>
<idno type="wicri:Area/Pmc/Curation">000102</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000001</idno>
<idno type="wicri:Area/Ncbi/Merge">000722</idno>
<idno type="wicri:Area/Ncbi/Curation">000722</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000722</idno>
<idno type="wicri:doubleKey">1040-4651:2016:Duvick J:xgdbvm:a:web</idno>
<idno type="wicri:Area/Main/Merge">000002</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud<xref ref-type="fn" rid="fn1"><sup>[OPEN]</sup>
</xref>
</title>
<author><name sortKey="Duvick, Jon" sort="Duvick, Jon" uniqKey="Duvick J" first="Jon" last="Duvick">Jon Duvick</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Iowa</region>
</placeName>
<wicri:cityArea>Department of Genetics, Development and Cell Biology, Iowa State University, Ames</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Standage, Daniel S" sort="Standage, Daniel S" uniqKey="Standage D" first="Daniel S." last="Standage">Daniel S. Standage</name>
<affiliation wicri:level="2"><nlm:aff id="aff2">Department of Biology, Indiana University, Bloomington, Indiana 47405</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Indiana</region>
</placeName>
<wicri:cityArea>Department of Biology, Indiana University, Bloomington</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name>
<affiliation wicri:level="2"><nlm:aff id="aff3">Bio Computing Facility, University of Arizona, Tucson, Arizona 85721</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Arizona</region>
</placeName>
<wicri:cityArea>Bio Computing Facility, University of Arizona, Tucson</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Brendel, Volker P" sort="Brendel, Volker P" uniqKey="Brendel V" first="Volker P." last="Brendel">Volker P. Brendel</name>
<affiliation wicri:level="2"><nlm:aff id="aff4">Department of Biology and School of Informatics and Computing, Indiana University, Bloomington, Indiana 47405</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Indiana</region>
</placeName>
<wicri:cityArea>Department of Biology and School of Informatics and Computing, Indiana University, Bloomington</wicri:cityArea>
</affiliation>
</author>
</analytic>
<series><title level="j">The Plant Cell</title>
<idno type="ISSN">1040-4651</idno>
<idno type="eISSN">1532-298X</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>xGDBvm is a novel tool for scalable, reproducible, and expandable genome annotation via Web-based interfaces that seamlessly integrate background cloud-based data storage and high-performance computer resources.</p>
</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000002 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 000002 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= CyberinfraV1 |flux= Main |étape= Merge |type= RBID |clé= PMC:4863385 |texte= xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud[OPEN] }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i -Sk "pubmed:27020957" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd \ | NlmPubMed2Wicri -a CyberinfraV1
This area was generated with Dilib version V0.6.25. |