Targeted diversity generation by intraterrestrial archaea and archaeal viruses
Identifieur interne : 000069 ( Main/Exploration ); précédent : 000068; suivant : 000070Targeted diversity generation by intraterrestrial archaea and archaeal viruses
Auteurs : Blair G. Paul [États-Unis] ; Sarah C. Bagby [États-Unis] ; Elizabeth Czornyj [États-Unis] ; Diego Arambula [États-Unis] ; Sumit Handa [États-Unis] ; Alexander Sczyrba [Allemagne, États-Unis] ; Partho Ghosh [États-Unis] ; Jeff F. Miller [États-Unis] ; David L. Valentine [États-Unis]Source :
- Nature Communications [ 2041-1723 ] ; 2015.
Abstract
In the evolutionary arms race between microbes, their parasites, and their neighbours, the capacity for rapid protein diversification is a potent weapon. Diversity-generating retroelements (DGRs) use mutagenic reverse transcription and retrohoming to generate myriad variants of a target gene. Originally discovered in pathogens, these retroelements have been identified in bacteria and their viruses, but never in archaea. Here we report the discovery of intact DGRs in two distinct intraterrestrial archaeal systems: a novel virus that appears to infect archaea in the marine subsurface, and, separately, two uncultivated nanoarchaea from the terrestrial subsurface. The viral DGR system targets putative tail fibre ligand-binding domains, potentially generating >1018 protein variants. The two single-cell nanoarchaeal genomes each possess ≥4 distinct DGRs. Against an expected background of low genome-wide mutation rates, these results demonstrate a previously unsuspected potential for rapid, targeted sequence diversification in intraterrestrial archaea and their viruses.
Url:
DOI: 10.1038/ncomms7585
PubMed: 25798780
PubMed Central: 4372165
Affiliations:
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<front><div type="abstract" xml:lang="en"><p>In the evolutionary arms race between microbes, their parasites, and their neighbours, the capacity for rapid protein diversification is a potent weapon. Diversity-generating retroelements (DGRs) use mutagenic reverse transcription and retrohoming to generate myriad variants of a target gene. Originally discovered in pathogens, these retroelements have been identified in bacteria and their viruses, but never in archaea. Here we report the discovery of intact DGRs in two distinct intraterrestrial archaeal systems: a novel virus that appears to infect archaea in the marine subsurface, and, separately, two uncultivated nanoarchaea from the terrestrial subsurface. The viral DGR system targets putative tail fibre ligand-binding domains, potentially generating >10<sup>18</sup>
protein variants. The two single-cell nanoarchaeal genomes each possess ≥4 distinct DGRs. Against an expected background of low genome-wide mutation rates, these results demonstrate a previously unsuspected potential for rapid, targeted sequence diversification in intraterrestrial archaea and their viruses.</p>
</div>
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</TEI>
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<li>États-Unis</li>
</country>
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<name sortKey="Arambula, Diego" sort="Arambula, Diego" uniqKey="Arambula D" first="Diego" last="Arambula">Diego Arambula</name>
<name sortKey="Bagby, Sarah C" sort="Bagby, Sarah C" uniqKey="Bagby S" first="Sarah C." last="Bagby">Sarah C. Bagby</name>
<name sortKey="Czornyj, Elizabeth" sort="Czornyj, Elizabeth" uniqKey="Czornyj E" first="Elizabeth" last="Czornyj">Elizabeth Czornyj</name>
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<name sortKey="Handa, Sumit" sort="Handa, Sumit" uniqKey="Handa S" first="Sumit" last="Handa">Sumit Handa</name>
<name sortKey="Miller, Jeff F" sort="Miller, Jeff F" uniqKey="Miller J" first="Jeff F." last="Miller">Jeff F. Miller</name>
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<name sortKey="Valentine, David L" sort="Valentine, David L" uniqKey="Valentine D" first="David L." last="Valentine">David L. Valentine</name>
<name sortKey="Valentine, David L" sort="Valentine, David L" uniqKey="Valentine D" first="David L." last="Valentine">David L. Valentine</name>
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