CyberinfraV1, Main, Exploration, bibRecord, 000492

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data

Identifieur interne : 000492 ( Main/Exploration ); précédent : 000491; suivant : 000493

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data

Auteurs : Zhengwei Zhu ; Beifang Niu ; Jing Chen ; Sitao Wu ; Shulei Sun ; Weizhong Li

Source :

Bioinformatics [ 1367-4803 ] ; 2012.

RBID : PMC:3530914

Abstract

Summary: Numerous metagenomics projects have produced tremendous amounts of sequencing data. Aligning these sequences to reference genomes is an essential analysis in metagenomics studies. Large-scale alignment data call for intuitive and efficient visualization tool. However, current tools such as various genome browsers are highly specialized to handle intraspecies mapping results. They are not suitable for alignment data in metagenomics, which are often interspecies alignments. We have developed a web browser-based desktop application for interactively visualizing alignment data of metagenomic sequences. This viewer is easy to use on all computer systems with modern web browsers and requires no software installation.

Availability:http://weizhongli-lab.org/mgaviewer

Contact:liwz@sdsc.edu

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530914

DOI: 10.1093/bioinformatics/bts567
PubMed: 23044549
PubMed Central: 3530914

Affiliations:

Le document en format XML

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<author><name sortKey="Zhu, Zhengwei" sort="Zhu, Zhengwei" uniqKey="Zhu Z" first="Zhengwei" last="Zhu">Zhengwei Zhu</name>
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<front><div type="abstract" xml:lang="en"><p><bold>Summary:</bold> Numerous metagenomics projects have produced tremendous amounts of
sequencing data. Aligning these sequences to reference genomes is an essential analysis in
metagenomics studies. Large-scale alignment data call for intuitive and efficient
visualization tool. However, current tools such as various genome browsers are highly
specialized to handle intraspecies mapping results. They are not suitable for alignment
data in metagenomics, which are often interspecies alignments. We have developed a web
browser-based desktop application for interactively visualizing alignment data of
metagenomic sequences. This viewer is easy to use on all computer systems with modern web
browsers and requires no software installation.</p>
<p><bold>Availability:</bold>
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<p><bold>Contact:</bold>
<email>liwz@sdsc.edu</email>
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MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data

Source :

Abstract

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