metaMicrobesOnline: phylogenomic analysis of microbial communities
Identifieur interne : 000450 ( Main/Exploration ); précédent : 000449; suivant : 000451metaMicrobesOnline: phylogenomic analysis of microbial communities
Auteurs : Dylan Chivian ; Paramvir S. Dehal ; Keith Keller ; Adam P. Arkin [États-Unis]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2012.
Abstract
The metaMicrobesOnline database (freely available at
Url:
DOI: 10.1093/nar/gks1202
PubMed: 23203984
PubMed Central: 3531168
Affiliations:
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Le document en format XML
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Dehal</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation></author><author><name sortKey="Keller, Keith" sort="Keller, Keith" uniqKey="Keller K" first="Keith" last="Keller">Keith Keller</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation></author><author><name sortKey="Arkin, Adam P" sort="Arkin, Adam P" uniqKey="Arkin A" first="Adam P." last="Arkin">Adam P. Arkin</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation><affiliation wicri:level="2"><nlm:aff id="gks1202-AFF1">Department of Bioengineering, University of California, Berkeley, CA 94720, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Bioengineering, University of California, Berkeley, CA 94720</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23203984</idno><idno type="pmc">3531168</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531168</idno><idno type="RBID">PMC:3531168</idno><idno type="doi">10.1093/nar/gks1202</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000580</idno><idno type="wicri:Area/Pmc/Curation">000580</idno><idno type="wicri:Area/Pmc/Checkpoint">000361</idno><idno type="wicri:Area/Ncbi/Merge">000372</idno><idno type="wicri:Area/Ncbi/Curation">000372</idno><idno type="wicri:Area/Ncbi/Checkpoint">000372</idno><idno type="wicri:doubleKey">0305-1048:2012:Chivian D:metamicrobesonline:phylogenomic:analysis</idno><idno type="wicri:Area/Main/Merge">000451</idno><idno type="wicri:Area/Main/Curation">000450</idno><idno type="wicri:Area/Main/Exploration">000450</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">metaMicrobesOnline: phylogenomic analysis of microbial communities</title><author><name sortKey="Chivian, Dylan" sort="Chivian, Dylan" uniqKey="Chivian D" first="Dylan" last="Chivian">Dylan Chivian</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation></author><author><name sortKey="Dehal, Paramvir S" sort="Dehal, Paramvir S" uniqKey="Dehal P" first="Paramvir S." last="Dehal">Paramvir S. Dehal</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation></author><author><name sortKey="Keller, Keith" sort="Keller, Keith" uniqKey="Keller K" first="Keith" last="Keller">Keith Keller</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation></author><author><name sortKey="Arkin, Adam P" sort="Arkin, Adam P" uniqKey="Arkin A" first="Adam P." last="Arkin">Adam P. Arkin</name><affiliation><nlm:aff wicri:cut=" and" id="gks1202-AFF1">Division of Physical Biosciences, Lawrence Berkeley National Laboratory</nlm:aff><wicri:noCountry code="subfield">Lawrence Berkeley National Laboratory</wicri:noCountry></affiliation><affiliation wicri:level="2"><nlm:aff id="gks1202-AFF1">Department of Bioengineering, University of California, Berkeley, CA 94720, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Bioengineering, University of California, Berkeley, CA 94720</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The metaMicrobesOnline database (freely available at <ext-link ext-link-type="uri" xlink:href="http://meta.MicrobesOnline.org">http://meta.MicrobesOnline.org</ext-link>) offers phylogenetic analysis of genes from microbial genomes and metagenomes. Gene trees are constructed for canonical gene families such as COG and Pfam. Such gene trees allow for rapid homologue analysis and subfamily comparison of genes from multiple metagenomes and comparisons with genes from microbial isolates. Additionally, the genome browser permits genome context comparisons, which may be used to determine the closest sequenced genome or suggest functionally associated genes. Lastly, the domain browser permits rapid comparison of protein domain organization within genes of interest from metagenomes and complete microbial genomes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF DeLong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mardis, Er" uniqKey="Mardis E">ER Mardis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kunin, V" uniqKey="Kunin V">V Kunin</name></author><author><name sortKey="Copeland, A" uniqKey="Copeland A">A Copeland</name></author><author><name sortKey="Lapidus, A" uniqKey="Lapidus A">A Lapidus</name></author><author><name sortKey="Mavromatis, K" uniqKey="Mavromatis K">K Mavromatis</name></author><author><name sortKey="Hugenholtz, P" uniqKey="Hugenholtz P">P Hugenholtz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pop, M" uniqKey="Pop M">M 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Chan</name></author><author><name sortKey="Park, Ji" uniqKey="Park J">JI Park</name></author><author><name sortKey="Thelen, Mp" uniqKey="Thelen M">MP Thelen</name></author><author><name sortKey="Adams, Pd" uniqKey="Adams P">PD Adams</name></author><author><name sortKey="Arkin, Ap" uniqKey="Arkin A">AP Arkin</name></author><author><name sortKey="Keasling, Jd" uniqKey="Keasling J">JD Keasling</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Putnam, N" uniqKey="Putnam N">N Putnam</name></author><author><name sortKey="Preston, Cm" uniqKey="Preston C">CM Preston</name></author><author><name sortKey="Detter, Jc" uniqKey="Detter J">JC Detter</name></author><author><name sortKey="Rokhsar, D" uniqKey="Rokhsar D">D Rokhsar</name></author><author><name sortKey="Richardson, Pm" uniqKey="Richardson P">PM Richardson</name></author><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF DeLong</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><noCountry><name sortKey="Chivian, Dylan" sort="Chivian, Dylan" uniqKey="Chivian D" first="Dylan" last="Chivian">Dylan Chivian</name><name sortKey="Dehal, Paramvir S" sort="Dehal, Paramvir S" uniqKey="Dehal P" first="Paramvir S." last="Dehal">Paramvir S. Dehal</name><name sortKey="Keller, Keith" sort="Keller, Keith" uniqKey="Keller K" first="Keith" last="Keller">Keith Keller</name></noCountry><country name="États-Unis"><region name="Californie"><name sortKey="Arkin, Adam P" sort="Arkin, Adam P" uniqKey="Arkin A" first="Adam P." last="Arkin">Adam P. Arkin</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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