CyberinfraV1, Main, Curation, bibRecord, 000B89

Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network

Identifieur interne : 000B89 ( Main/Curation ); précédent : 000B88; suivant : 000B90

Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network

Auteurs : Ulrich Harttig [Allemagne] ; Anthony J. Travis ; Philippe Rocca-Serra ; Marten Renkema [Pays-Bas] ; Ben Van Ommen [Pays-Bas] ; Heiner Boeing [Allemagne]

Source :

Genes & Nutrition [ 1555-8932 ] ; 2009.

RBID : PMC:2690731

Abstract

New ‘omics’ technologies are changing nutritional sciences research. They enable to tackle increasingly complex questions but also increase the need for collaboration between research groups. An important challenge for successful collaboration is the management and structured exchange of information that accompanies data-intense technologies. NuGO, the European Nutrigenomics Organization, the major collaborating network in molecular nutritional sciences, is supporting the application of modern information technologies in this area. We have developed and implemented a concept for data management and computing infrastructure that supports collaboration between nutrigenomics researchers. The system fills the gap between “private” storing with occasional file sharing by email and the use of centralized databases. It provides flexible tools to share data, also during experiments, while preserving ownership. The NuGO Information Network is a decentral, distributed system for data exchange based on standard web technology. Secure access to data, maintained by the individual researcher, is enabled by web services based on the the BioMoby framework. A central directory provides information about available web services. The flexibility of the infrastructure allows a wide variety of services for data processing and integration by combining several web services, including public services. Therefore, this integrated information system is suited for other research collaborations.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690731

DOI: 10.1007/s12263-009-0123-8
PubMed: 19408032
PubMed Central: 2690731

Links toward previous steps (curation, corpus...)

to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000224
to stream Pmc, to step Curation: Pour aller vers cette notice dans l'étape Curation :000224
to stream Pmc, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000624
to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :000081
to stream Ncbi, to step Curation: Pour aller vers cette notice dans l'étape Curation :000081
to stream Ncbi, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000081
to stream Main, to step Merge: Pour aller vers cette notice dans l'étape Curation :000B95

Links to Exploration step

PMC:2690731

Curation

No country items

Anthony J. Travis

<affiliation><nlm:aff id="Aff2">University of Aberdeen Rowett Institute of Nutrition and Health, Greenburn Road, Bucksburn, Aberdeen, AB21 9SB UK</nlm:aff>
<wicri:noCountry code="subfield">AB21 9SB UK</wicri:noCountry>
</affiliation>

Philippe Rocca-Serra

<affiliation><nlm:aff id="Aff3">EMBL-EBI, Wellcome Trust Genome Campus, Cambridge Hinxton, CB10 1SD UK</nlm:aff>
<wicri:noCountry code="subfield">CB10 1SD UK</wicri:noCountry>
</affiliation>

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network</title>
<author><name sortKey="Harttig, Ulrich" sort="Harttig, Ulrich" uniqKey="Harttig U" first="Ulrich" last="Harttig">Ulrich Harttig</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal</wicri:regionArea>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Travis, Anthony J" sort="Travis, Anthony J" uniqKey="Travis A" first="Anthony J." last="Travis">Anthony J. Travis</name>
<affiliation><nlm:aff id="Aff2">University of Aberdeen Rowett Institute of Nutrition and Health, Greenburn Road, Bucksburn, Aberdeen, AB21 9SB UK</nlm:aff>
<wicri:noCountry code="subfield">AB21 9SB UK</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<affiliation><nlm:aff id="Aff3">EMBL-EBI, Wellcome Trust Genome Campus, Cambridge Hinxton, CB10 1SD UK</nlm:aff>
<wicri:noCountry code="subfield">CB10 1SD UK</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Renkema, Marten" sort="Renkema, Marten" uniqKey="Renkema M" first="Marten" last="Renkema">Marten Renkema</name>
<affiliation wicri:level="1"><nlm:aff id="Aff4">Topshare International BV, PO Box 240, 6700 AE Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Topshare International BV, PO Box 240, 6700 AE Wageningen</wicri:regionArea>
<wicri:noRegion>6700 AE Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Van Ommen, Ben" sort="Van Ommen, Ben" uniqKey="Van Ommen B" first="Ben" last="Van Ommen">Ben Van Ommen</name>
<affiliation wicri:level="1"><nlm:aff id="Aff5">TNO Quality of Life, PO box 360, 3700 AJ Zeist, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>TNO Quality of Life, PO box 360, 3700 AJ Zeist</wicri:regionArea>
<wicri:noRegion>3700 AJ Zeist</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Boeing, Heiner" sort="Boeing, Heiner" uniqKey="Boeing H" first="Heiner" last="Boeing">Heiner Boeing</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal</wicri:regionArea>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">19408032</idno>
<idno type="pmc">2690731</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690731</idno>
<idno type="RBID">PMC:2690731</idno>
<idno type="doi">10.1007/s12263-009-0123-8</idno>
<date when="2009">2009</date>
<idno type="wicri:Area/Pmc/Corpus">000224</idno>
<idno type="wicri:Area/Pmc/Curation">000224</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000624</idno>
<idno type="wicri:Area/Ncbi/Merge">000081</idno>
<idno type="wicri:Area/Ncbi/Curation">000081</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000081</idno>
<idno type="wicri:doubleKey">1555-8932:2009:Harttig U:owner:controlled:data</idno>
<idno type="wicri:Area/Main/Merge">000B95</idno>
<idno type="wicri:Area/Main/Curation">000B89</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network</title>
<author><name sortKey="Harttig, Ulrich" sort="Harttig, Ulrich" uniqKey="Harttig U" first="Ulrich" last="Harttig">Ulrich Harttig</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal</wicri:regionArea>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Travis, Anthony J" sort="Travis, Anthony J" uniqKey="Travis A" first="Anthony J." last="Travis">Anthony J. Travis</name>
<affiliation><nlm:aff id="Aff2">University of Aberdeen Rowett Institute of Nutrition and Health, Greenburn Road, Bucksburn, Aberdeen, AB21 9SB UK</nlm:aff>
<wicri:noCountry code="subfield">AB21 9SB UK</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<affiliation><nlm:aff id="Aff3">EMBL-EBI, Wellcome Trust Genome Campus, Cambridge Hinxton, CB10 1SD UK</nlm:aff>
<wicri:noCountry code="subfield">CB10 1SD UK</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Renkema, Marten" sort="Renkema, Marten" uniqKey="Renkema M" first="Marten" last="Renkema">Marten Renkema</name>
<affiliation wicri:level="1"><nlm:aff id="Aff4">Topshare International BV, PO Box 240, 6700 AE Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Topshare International BV, PO Box 240, 6700 AE Wageningen</wicri:regionArea>
<wicri:noRegion>6700 AE Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Van Ommen, Ben" sort="Van Ommen, Ben" uniqKey="Van Ommen B" first="Ben" last="Van Ommen">Ben Van Ommen</name>
<affiliation wicri:level="1"><nlm:aff id="Aff5">TNO Quality of Life, PO box 360, 3700 AJ Zeist, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>TNO Quality of Life, PO box 360, 3700 AJ Zeist</wicri:regionArea>
<wicri:noRegion>3700 AJ Zeist</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Boeing, Heiner" sort="Boeing, Heiner" uniqKey="Boeing H" first="Heiner" last="Boeing">Heiner Boeing</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1">Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal</wicri:regionArea>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
<wicri:noRegion>14558 Nuthetal</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Genes & Nutrition</title>
<idno type="ISSN">1555-8932</idno>
<idno type="eISSN">1865-3499</idno>
<imprint><date when="2009">2009</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>New ‘omics’ technologies are changing nutritional sciences research. They enable to tackle increasingly complex questions but also increase the need for collaboration between research groups. An important challenge for successful collaboration is the management and structured exchange of information that accompanies data-intense technologies. NuGO, the European Nutrigenomics Organization, the major collaborating network in molecular nutritional sciences, is supporting the application of modern information technologies in this area. We have developed and implemented a concept for data management and computing infrastructure that supports collaboration between nutrigenomics researchers. The system fills the gap between “private” storing with occasional file sharing by email and the use of centralized databases. It provides flexible tools to share data, also during experiments, while preserving ownership. The NuGO Information Network is a decentral, distributed system for data exchange based on standard web technology. Secure access to data, maintained by the individual researcher, is enabled by web services based on the the BioMoby framework. A central directory provides information about available web services. The flexibility of the infrastructure allows a wide variety of services for data processing and integration by combining several web services, including public services. Therefore, this integrated information system is suited for other research collaborations.</p>
</div>
</front>
</TEI>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Curation

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000B89 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000B89 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Curation
   |type=    RBID
   |clé=     PMC:2690731
   |texte=   Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i   -Sk "pubmed:19408032" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024

	Serveur d'exploration Cyberinfrastructure
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration Cyberinfrastructure

Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network

Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network

Source :

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Curation

No country items

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki