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Novel Isonitrile Hydratase Involved in Isonitrile Metabolism*

Identifieur interne : 000284 ( Pmc/Checkpoint ); précédent : 000283; suivant : 000285

Novel Isonitrile Hydratase Involved in Isonitrile Metabolism*

Auteurs : Hiroyoshi Sato [Japon] ; Yoshiteru Hashimoto [Japon] ; Hiroshi Fukatsu [Japon] ; Michihiko Kobayashi [Japon]

Source :

RBID : PMC:2966095

Abstract

We previously discovered N-substituted formamide deformylase (NfdA) in Arthrobacter pascens F164, which degrades N-substituted formamide (Fukatsu, H., Hashimoto, Y., Goda, M., Higashibata, H., and Kobayashi, M. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 13726–13731). In this study, we found an enzyme involved in the first step of isonitrile metabolism, isonitrile hydratase, that hydrates isonitrile to the corresponding N-substituted formamide. First, we investigated the optimum culture conditions for the production of isonitrile hydratase. The highest enzyme activity was obtained when A. pascens F164 was cultured in a nutrient medium containing N-benzylformamide. This Arthrobacter isonitrile hydratase was purified, characterized, and compared with Pseudomonas putida N19-2 isonitrile hydratase (InhA), which is the sole one reported at present. Arthrobacter isonitrile hydratase was found to have a molecular mass of about 530 kDa and to consist of 12 identical subunits. The apparent Km value for cyclohexyl isocyanide was 0.95 ± 0.05 mm. A. pascens F164 grew and exhibited the isonitrile hydratase and N-substituted formamide deformylase activities when cultured in a medium containing an isonitrile as the sole carbon and nitrogen sources. However, both enzyme activities were not observed on culture in a medium containing glycerol and (NH4)2SO4 as the sole carbon and nitrogen sources, respectively. These findings suggested that the Arthrobacter enzyme is an inducible enzyme, possibly involved in assimilation and/or detoxification of isonitrile. Moreover, gene cloning of the Arthrobacter enzyme revealed no sequence similarity between this enzyme and InhA. Comparison of their properties and features demonstrated that the two enzymes are biochemically, immunologically, and structurally different from each other. Thus, we discovered a new isonitrile hydratase named InhB.


Url:
DOI: 10.1074/jbc.M110.150227
PubMed: 20826798
PubMed Central: 2966095


Affiliations:


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<p>We previously discovered
<italic>N</italic>
-substituted formamide deformylase (NfdA) in
<italic>Arthrobacter pascens</italic>
F164, which degrades
<italic>N</italic>
-substituted formamide (Fukatsu, H., Hashimoto, Y., Goda, M., Higashibata, H., and Kobayashi, M. (2004)
<italic>Proc. Natl. Acad. Sci. U.S.A.</italic>
101, 13726–13731). In this study, we found an enzyme involved in the first step of isonitrile metabolism, isonitrile hydratase, that hydrates isonitrile to the corresponding
<italic>N</italic>
-substituted formamide. First, we investigated the optimum culture conditions for the production of isonitrile hydratase. The highest enzyme activity was obtained when
<italic>A. pascens</italic>
F164 was cultured in a nutrient medium containing
<italic>N</italic>
-benzylformamide. This
<italic>Arthrobacter</italic>
isonitrile hydratase was purified, characterized, and compared with
<italic>Pseudomonas putida</italic>
N19-2 isonitrile hydratase (InhA), which is the sole one reported at present.
<italic>Arthrobacter</italic>
isonitrile hydratase was found to have a molecular mass of about 530 kDa and to consist of 12 identical subunits. The apparent
<italic>K
<sub>m</sub>
</italic>
value for cyclohexyl isocyanide was 0.95 ± 0.05 m
<sc>m</sc>
.
<italic>A. pascens</italic>
F164 grew and exhibited the isonitrile hydratase and
<italic>N</italic>
-substituted formamide deformylase activities when cultured in a medium containing an isonitrile as the sole carbon and nitrogen sources. However, both enzyme activities were not observed on culture in a medium containing glycerol and (NH
<sub>4</sub>
)
<sub>2</sub>
SO
<sub>4</sub>
as the sole carbon and nitrogen sources, respectively. These findings suggested that the
<italic>Arthrobacter</italic>
enzyme is an inducible enzyme, possibly involved in assimilation and/or detoxification of isonitrile. Moreover, gene cloning of the
<italic>Arthrobacter</italic>
enzyme revealed no sequence similarity between this enzyme and InhA. Comparison of their properties and features demonstrated that the two enzymes are biochemically, immunologically, and structurally different from each other. Thus, we discovered a new isonitrile hydratase named InhB.</p>
</div>
</front>
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<title-group>
<article-title>Novel Isonitrile Hydratase Involved in Isonitrile Metabolism
<xref ref-type="fn" rid="FN1">*</xref>
</article-title>
<alt-title alt-title-type="short">A New Type of Isonitrile Hydratase</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Sato</surname>
<given-names>Hiroyoshi</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
<xref ref-type="author-notes" rid="FN2">
<sup>1</sup>
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<name>
<surname>Hashimoto</surname>
<given-names>Yoshiteru</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
<xref ref-type="author-notes" rid="FN2">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fukatsu</surname>
<given-names>Hiroshi</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kobayashi</surname>
<given-names>Michihiko</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
<xref ref-type="corresp" rid="cor1">
<sup>2</sup>
</xref>
</contrib>
<aff id="aff1">From the Institute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan</aff>
</contrib-group>
<author-notes>
<corresp id="cor1">
<label>2</label>
To whom correspondence should be addressed. Fax:
<fax>81-29-853-4605</fax>
.</corresp>
<fn fn-type="equal" id="FN2">
<label>1</label>
<p>Both authors contributed equally to this work.</p>
</fn>
</author-notes>
<pub-date pub-type="ppub">
<day>5</day>
<month>11</month>
<year>2010</year>
</pub-date>
<pub-date pub-type="epub">
<day>7</day>
<month>9</month>
<year>2010</year>
</pub-date>
<volume>285</volume>
<issue>45</issue>
<fpage>34793</fpage>
<lpage>34802</lpage>
<history>
<date date-type="received">
<day>1</day>
<month>6</month>
<year>2010</year>
</date>
<date date-type="rev-recd">
<day>3</day>
<month>9</month>
<year>2010</year>
</date>
</history>
<permissions>
<copyright-statement>© 2010 by The American Society for Biochemistry and Molecular Biology, Inc.</copyright-statement>
</permissions>
<self-uri xlink:title="pdf" xlink:type="simple" xlink:href="zbc04510034793.pdf"></self-uri>
<abstract>
<p>We previously discovered
<italic>N</italic>
-substituted formamide deformylase (NfdA) in
<italic>Arthrobacter pascens</italic>
F164, which degrades
<italic>N</italic>
-substituted formamide (Fukatsu, H., Hashimoto, Y., Goda, M., Higashibata, H., and Kobayashi, M. (2004)
<italic>Proc. Natl. Acad. Sci. U.S.A.</italic>
101, 13726–13731). In this study, we found an enzyme involved in the first step of isonitrile metabolism, isonitrile hydratase, that hydrates isonitrile to the corresponding
<italic>N</italic>
-substituted formamide. First, we investigated the optimum culture conditions for the production of isonitrile hydratase. The highest enzyme activity was obtained when
<italic>A. pascens</italic>
F164 was cultured in a nutrient medium containing
<italic>N</italic>
-benzylformamide. This
<italic>Arthrobacter</italic>
isonitrile hydratase was purified, characterized, and compared with
<italic>Pseudomonas putida</italic>
N19-2 isonitrile hydratase (InhA), which is the sole one reported at present.
<italic>Arthrobacter</italic>
isonitrile hydratase was found to have a molecular mass of about 530 kDa and to consist of 12 identical subunits. The apparent
<italic>K
<sub>m</sub>
</italic>
value for cyclohexyl isocyanide was 0.95 ± 0.05 m
<sc>m</sc>
.
<italic>A. pascens</italic>
F164 grew and exhibited the isonitrile hydratase and
<italic>N</italic>
-substituted formamide deformylase activities when cultured in a medium containing an isonitrile as the sole carbon and nitrogen sources. However, both enzyme activities were not observed on culture in a medium containing glycerol and (NH
<sub>4</sub>
)
<sub>2</sub>
SO
<sub>4</sub>
as the sole carbon and nitrogen sources, respectively. These findings suggested that the
<italic>Arthrobacter</italic>
enzyme is an inducible enzyme, possibly involved in assimilation and/or detoxification of isonitrile. Moreover, gene cloning of the
<italic>Arthrobacter</italic>
enzyme revealed no sequence similarity between this enzyme and InhA. Comparison of their properties and features demonstrated that the two enzymes are biochemically, immunologically, and structurally different from each other. Thus, we discovered a new isonitrile hydratase named InhB.</p>
</abstract>
<kwd-group>
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<kwd>Enzyme Purification</kwd>
<kwd>Enzyme Structure</kwd>
<kwd>Enzymes</kwd>
<kwd>Metabolism</kwd>
<kwd>N-Substituted Formamide</kwd>
<kwd>Isonitrile Hydratase</kwd>
</kwd-group>
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<name sortKey="Sato, Hiroyoshi" sort="Sato, Hiroyoshi" uniqKey="Sato H" first="Hiroyoshi" last="Sato">Hiroyoshi Sato</name>
</noRegion>
<name sortKey="Fukatsu, Hiroshi" sort="Fukatsu, Hiroshi" uniqKey="Fukatsu H" first="Hiroshi" last="Fukatsu">Hiroshi Fukatsu</name>
<name sortKey="Hashimoto, Yoshiteru" sort="Hashimoto, Yoshiteru" uniqKey="Hashimoto Y" first="Yoshiteru" last="Hashimoto">Yoshiteru Hashimoto</name>
<name sortKey="Kobayashi, Michihiko" sort="Kobayashi, Michihiko" uniqKey="Kobayashi M" first="Michihiko" last="Kobayashi">Michihiko Kobayashi</name>
</country>
</tree>
</affiliations>
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