Mutational and Bioinformatic Analysis of Haloarchaeal Lipobox-Containing Proteins
Identifieur interne : 000D66 ( Main/Curation ); précédent : 000D65; suivant : 000D67Mutational and Bioinformatic Analysis of Haloarchaeal Lipobox-Containing Proteins
Auteurs : Stefanie Storf [États-Unis] ; Friedhelm Pfeiffer [Allemagne] ; Kieran Dilks [États-Unis] ; Zhong Qiang Chen ; Saheed Imam [États-Unis] ; Mechthild Pohlschröder [États-Unis]Source :
- Archaea [ 1472-3646 ] ; 2010.
Abstract
A conserved lipid-modified cysteine found in a protein motif commonly referred to as a lipobox mediates the membrane anchoring of a subset of proteins transported across the bacterial cytoplasmic membrane via the Sec pathway. Sequenced haloarchaeal genomes encode many putative lipoproteins and recent studies have confirmed the importance of the conserved lipobox cysteine for signal peptide processing of three lipobox-containing proteins in the model archaeon
Url:
DOI: 10.1155/2010/410975
PubMed: 20886060
PubMed Central: 2945643
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type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Pfeiffer, Friedhelm" sort="Pfeiffer, Friedhelm" uniqKey="Pfeiffer F" first="Friedhelm" last="Pfeiffer">Friedhelm Pfeiffer</name><affiliation wicri:level="1"><nlm:aff id="I2">Department of Membrane Biochemistry, Max-Planck-Institute of Biochemistry, Martinsried 82152, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Membrane Biochemistry, Max-Planck-Institute of Biochemistry, Martinsried 82152</wicri:regionArea><wicri:noRegion>82152</wicri:noRegion><wicri:noRegion>82152</wicri:noRegion><wicri:noRegion>Martinsried 82152</wicri:noRegion></affiliation></author><author><name sortKey="Dilks, Kieran" sort="Dilks, Kieran" uniqKey="Dilks K" first="Kieran" last="Dilks">Kieran Dilks</name><affiliation wicri:level="2"><nlm:aff id="I1">Department of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018</wicri:regionArea><placeName><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Chen, Zhong Qiang" sort="Chen, Zhong Qiang" uniqKey="Chen Z" first="Zhong Qiang" last="Chen">Zhong Qiang Chen</name><affiliation><nlm:aff>NONE</nlm:aff></affiliation><affiliation><nlm:aff>NONE</nlm:aff></affiliation></author><author><name sortKey="Imam, Saheed" sort="Imam, Saheed" uniqKey="Imam S" first="Saheed" last="Imam">Saheed Imam</name><affiliation wicri:level="2"><nlm:aff id="I4">Program in Cellular and Molecular Biology, University of Wisconsin-Madison, Madison, WI 53706, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Program in Cellular and Molecular Biology, University of Wisconsin-Madison, Madison, WI 53706</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation></author><author><name sortKey="Pohlschroder, Mechthild" sort="Pohlschroder, Mechthild" uniqKey="Pohlschroder M" first="Mechthild" last="Pohlschröder">Mechthild Pohlschröder</name><affiliation wicri:level="2"><nlm:aff id="I1">Department of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018</wicri:regionArea><placeName><region type="state">Pennsylvanie</region></placeName></affiliation></author></analytic><series><title level="j">Archaea</title><idno type="ISSN">1472-3646</idno><idno type="eISSN">1472-3654</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>A conserved lipid-modified cysteine found in a protein motif commonly referred to as a lipobox mediates the membrane anchoring of a subset of proteins transported across the bacterial cytoplasmic membrane via the Sec pathway. Sequenced haloarchaeal genomes encode many putative lipoproteins and recent studies have confirmed the importance of the conserved lipobox cysteine for signal peptide processing of three lipobox-containing proteins in the model archaeon <italic>Haloferax volcanii</italic>. We have extended these <italic>in vivo</italic> analyses to additional <italic>Hfx. volcanii</italic> substrates, supporting our previous <italic>in silico</italic> predictions and confirming the diversity of predicted <italic>Hfx. volcanii</italic> lipoproteins. Moreover, using extensive comparative secretome analyses, we identified genes encodining putative lipoproteins across a wide range of archaeal species. While our <italic>in silico</italic> analyses, supported by <italic>in vivo</italic> data, indicate that most haloarchaeal lipoproteins are Tat substrates, these analyses also predict that many crenarchaeal species lack lipoproteins altogether and that other archaea, such as nonhalophilic euryarchaeal species, transport lipoproteins via the Sec pathway. To facilitate the identification of genes that encode potential haloarchaeal Tat-lipoproteins, we have developed TatLipo, a bioinformatic tool designed to detect lipoboxes in haloarchaeal Tat signal peptides. Our results provide a strong foundation for future studies aimed at identifying components of the archaeal lipoprotein biogenesis pathway.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Driessen, Ajm" uniqKey="Driessen A">AJM Driessen</name></author><author><name sortKey="Nouwen, N" uniqKey="Nouwen N">N Nouwen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pohlschroder, M" uniqKey="Pohlschroder M">M Pohlschröder</name></author><author><name sortKey="Hartmann, E" uniqKey="Hartmann E">E Hartmann</name></author><author><name sortKey="Hand, Nj" uniqKey="Hand N">NJ Hand</name></author><author><name sortKey="Dilks, K" uniqKey="Dilks K">K Dilks</name></author><author><name sortKey="Haddad, A" uniqKey="Haddad A">A Haddad</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Natale, P" uniqKey="Natale P">P Natale</name></author><author><name sortKey="Bruser, T" 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