Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
Identifieur interne : 000288 ( Pmc/Curation ); précédent : 000287; suivant : 000289Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
Auteurs : Konstantinos Mavromatis [États-Unis] ; Natalia Ivanova [États-Unis] ; Iain Anderson [États-Unis] ; Athanasios Lykidis [États-Unis] ; Sean D. Hooper [États-Unis] ; Hui Sun [États-Unis] ; Victor Kunin [États-Unis] ; Alla Lapidus [États-Unis] ; Philip Hugenholtz [États-Unis] ; Bharat Patel [Australie] ; Nikos C. Kyrpides [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2009.
Abstract
Url:
DOI: 10.1371/journal.pone.0004192
PubMed: 19145256
PubMed Central: 2626281
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000289
Links to Exploration step
PMC:2626281Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome Analysis of the Anaerobic Thermohalophilic Bacterium <italic>Halothermothrix orenii</italic></title><author><name sortKey="Mavromatis, Konstantinos" sort="Mavromatis, Konstantinos" uniqKey="Mavromatis K" first="Konstantinos" last="Mavromatis">Konstantinos Mavromatis</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Ivanova, Natalia" sort="Ivanova, Natalia" uniqKey="Ivanova N" first="Natalia" last="Ivanova">Natalia Ivanova</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Anderson, Iain" sort="Anderson, Iain" uniqKey="Anderson I" first="Iain" last="Anderson">Iain Anderson</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Lykidis, Athanasios" sort="Lykidis, Athanasios" uniqKey="Lykidis A" first="Athanasios" last="Lykidis">Athanasios Lykidis</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Hooper, Sean D" sort="Hooper, Sean D" uniqKey="Hooper S" first="Sean D." last="Hooper">Sean D. Hooper</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Kunin, Victor" sort="Kunin, Victor" uniqKey="Kunin V" first="Victor" last="Kunin">Victor Kunin</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Hugenholtz, Philip" sort="Hugenholtz, Philip" uniqKey="Hugenholtz P" first="Philip" last="Hugenholtz">Philip Hugenholtz</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Patel, Bharat" sort="Patel, Bharat" uniqKey="Patel B" first="Bharat" last="Patel">Bharat Patel</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane</wicri:regionArea></affiliation></author><author><name sortKey="Kyrpides, Nikos C" sort="Kyrpides, Nikos C" uniqKey="Kyrpides N" first="Nikos C." last="Kyrpides">Nikos C. Kyrpides</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">19145256</idno><idno type="pmc">2626281</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2626281</idno><idno type="RBID">PMC:2626281</idno><idno type="doi">10.1371/journal.pone.0004192</idno><date when="2009">2009</date><idno type="wicri:Area/Pmc/Corpus">000289</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000289</idno><idno type="wicri:Area/Pmc/Curation">000288</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000288</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome Analysis of the Anaerobic Thermohalophilic Bacterium <italic>Halothermothrix orenii</italic></title><author><name sortKey="Mavromatis, Konstantinos" sort="Mavromatis, Konstantinos" uniqKey="Mavromatis K" first="Konstantinos" last="Mavromatis">Konstantinos Mavromatis</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Ivanova, Natalia" sort="Ivanova, Natalia" uniqKey="Ivanova N" first="Natalia" last="Ivanova">Natalia Ivanova</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Anderson, Iain" sort="Anderson, Iain" uniqKey="Anderson I" first="Iain" last="Anderson">Iain Anderson</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Lykidis, Athanasios" sort="Lykidis, Athanasios" uniqKey="Lykidis A" first="Athanasios" last="Lykidis">Athanasios Lykidis</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Hooper, Sean D" sort="Hooper, Sean D" uniqKey="Hooper S" first="Sean D." last="Hooper">Sean D. Hooper</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Kunin, Victor" sort="Kunin, Victor" uniqKey="Kunin V" first="Victor" last="Kunin">Victor Kunin</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Hugenholtz, Philip" sort="Hugenholtz, Philip" uniqKey="Hugenholtz P" first="Philip" last="Hugenholtz">Philip Hugenholtz</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author><author><name sortKey="Patel, Bharat" sort="Patel, Bharat" uniqKey="Patel B" first="Bharat" last="Patel">Bharat Patel</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane</wicri:regionArea></affiliation></author><author><name sortKey="Kyrpides, Nikos C" sort="Kyrpides, Nikos C" uniqKey="Kyrpides N" first="Nikos C." last="Kyrpides">Nikos C. Kyrpides</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Halothermothirx orenii</italic> is a strictly anaerobic thermohalophilic bacterium isolated from sediment of a Tunisian salt lake. It belongs to the order Halanaerobiales in the phylum Firmicutes. The complete sequence revealed that the genome consists of one circular chromosome of 2578146 bps encoding 2451 predicted genes. This is the first genome sequence of an organism belonging to the Haloanaerobiales. Features of both Gram positive and Gram negative bacteria were identified with the presence of both a sporulating mechanism typical of Firmicutes and a characteristic Gram negative lipopolysaccharide being the most prominent. Protein sequence analyses and metabolic reconstruction reveal a unique combination of strategies for thermophilic and halophilic adaptation. <italic>H. orenii</italic> can serve as a model organism for the study of the evolution of the Gram negative phenotype as well as the adaptation under thermohalophilic conditions and the development of biotechnological applications under conditions that require high temperatures and high salt concentrations.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article" xml:lang="EN"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title>PLoS ONE</journal-title><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">19145256</article-id><article-id pub-id-type="pmc">2626281</article-id><article-id pub-id-type="publisher-id">08-PONE-RA-07155R1</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0004192</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline"><subject>Evolutionary Biology/Bioinformatics</subject><subject>Genetics and Genomics/Bioinformatics</subject><subject>Genetics and Genomics/Comparative Genomics</subject></subj-group></article-categories><title-group><article-title>Genome Analysis of the Anaerobic Thermohalophilic Bacterium <italic>Halothermothrix orenii</italic></article-title><alt-title alt-title-type="running-head">Genome Analysis of <italic>H. orenii</italic>.</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Mavromatis</surname><given-names>Konstantinos</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ivanova</surname><given-names>Natalia</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Anderson</surname><given-names>Iain</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lykidis</surname><given-names>Athanasios</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Hooper</surname><given-names>Sean D.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Sun</surname><given-names>Hui</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kunin</surname><given-names>Victor</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lapidus</surname><given-names>Alla</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Hugenholtz</surname><given-names>Philip</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Patel</surname><given-names>Bharat</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kyrpides</surname><given-names>Nikos C.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane, Australia</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Rodriguez-Valera</surname><given-names>Francisco</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1">Universidad Miguel Hernandez, Spain</aff><author-notes><corresp id="cor1">* E-mail: <email>KMavrommatis@lbl.gov</email></corresp><fn fn-type="con"><p>Conceived and designed the experiments: NCK. Performed the experiments: BP. Analyzed the data: KM NI IA AL SDH HS VK AL PH NCK. Contributed reagents/materials/analysis tools: BP. Wrote the paper: KM NCK.</p></fn></author-notes><pub-date pub-type="collection"><year>2009</year></pub-date><pub-date pub-type="epub"><day>15</day><month>1</month><year>2009</year></pub-date><volume>4</volume><issue>1</issue><elocation-id>e4192</elocation-id><history><date date-type="received"><day>3</day><month>11</month><year>2008</year></date><date date-type="accepted"><day>4</day><month>12</month><year>2008</year></date></history><copyright-statement>Mavromatis et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</copyright-statement><copyright-year>2009</copyright-year><abstract><p><italic>Halothermothirx orenii</italic> is a strictly anaerobic thermohalophilic bacterium isolated from sediment of a Tunisian salt lake. It belongs to the order Halanaerobiales in the phylum Firmicutes. The complete sequence revealed that the genome consists of one circular chromosome of 2578146 bps encoding 2451 predicted genes. This is the first genome sequence of an organism belonging to the Haloanaerobiales. Features of both Gram positive and Gram negative bacteria were identified with the presence of both a sporulating mechanism typical of Firmicutes and a characteristic Gram negative lipopolysaccharide being the most prominent. Protein sequence analyses and metabolic reconstruction reveal a unique combination of strategies for thermophilic and halophilic adaptation. <italic>H. orenii</italic> can serve as a model organism for the study of the evolution of the Gram negative phenotype as well as the adaptation under thermohalophilic conditions and the development of biotechnological applications under conditions that require high temperatures and high salt concentrations.</p></abstract><counts><page-count count="8"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Terre/explor/CobaltMaghrebV1/Data/Pmc/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000288 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd -nk 000288 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Terre
|area= CobaltMaghrebV1
|flux= Pmc
|étape= Curation
|type= RBID
|clé= PMC:2626281
|texte= Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Curation/RBID.i -Sk "pubmed:19145256" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd \
| NlmPubMed2Wicri -a CobaltMaghrebV1
| This area was generated with Dilib version V0.6.32. |  |