Exploring the Diversity of Arcobacter butzleri from Cattle in the UK Using MLST and Whole Genome Sequencing
Identifieur interne : 000243 ( Ncbi/Merge ); précédent : 000242; suivant : 000244Exploring the Diversity of Arcobacter butzleri from Cattle in the UK Using MLST and Whole Genome Sequencing
Auteurs : J. Yvette Merga [Royaume-Uni] ; Nicola J. Williams [Royaume-Uni] ; William G. Miller [États-Unis] ; Andrew J. H. Leatherbarrow [Royaume-Uni] ; Malcolm Bennett [Royaume-Uni] ; Neil Hall [Royaume-Uni] ; Kevin E. Ashelford [Royaume-Uni] ; Craig Winstanley [Royaume-Uni]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
Url:
DOI: 10.1371/journal.pone.0055240
PubMed: 23405126
PubMed Central: 3566208
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PMC:3566208Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Exploring the Diversity of <italic>Arcobacter butzleri</italic> from Cattle in the UK Using MLST and Whole Genome Sequencing</title><author><name sortKey="Merga, J Yvette" sort="Merga, J Yvette" uniqKey="Merga J" first="J. Yvette" last="Merga">J. Yvette Merga</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Williams, Nicola J" sort="Williams, Nicola J" uniqKey="Williams N" first="Nicola J." last="Williams">Nicola J. Williams</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Miller, William G" sort="Miller, William G" uniqKey="Miller W" first="William G." last="Miller">William G. Miller</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Produce Safety and Microbiology Research Unit, U. S. Department of Agriculture, Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Produce Safety and Microbiology Research Unit, U. S. Department of Agriculture, Albany, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Leatherbarrow, Andrew J H" sort="Leatherbarrow, Andrew J H" uniqKey="Leatherbarrow A" first="Andrew J. H." last="Leatherbarrow">Andrew J. H. Leatherbarrow</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Bennett, Malcolm" sort="Bennett, Malcolm" uniqKey="Bennett M" first="Malcolm" last="Bennett">Malcolm Bennett</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Hall, Neil" sort="Hall, Neil" uniqKey="Hall N" first="Neil" last="Hall">Neil Hall</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Ashelford, Kevin E" sort="Ashelford, Kevin E" uniqKey="Ashelford K" first="Kevin E." last="Ashelford">Kevin E. Ashelford</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Winstanley, Craig" sort="Winstanley, Craig" uniqKey="Winstanley C" first="Craig" last="Winstanley">Craig Winstanley</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23405126</idno><idno type="pmc">3566208</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566208</idno><idno type="RBID">PMC:3566208</idno><idno type="doi">10.1371/journal.pone.0055240</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000449</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000449</idno><idno type="wicri:Area/Pmc/Curation">000448</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000448</idno><idno type="wicri:Area/Pmc/Checkpoint">000196</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000196</idno><idno type="wicri:Area/Ncbi/Merge">000243</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Exploring the Diversity of <italic>Arcobacter butzleri</italic> from Cattle in the UK Using MLST and Whole Genome Sequencing</title><author><name sortKey="Merga, J Yvette" sort="Merga, J Yvette" uniqKey="Merga J" first="J. Yvette" last="Merga">J. Yvette Merga</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Williams, Nicola J" sort="Williams, Nicola J" uniqKey="Williams N" first="Nicola J." last="Williams">Nicola J. Williams</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Miller, William G" sort="Miller, William G" uniqKey="Miller W" first="William G." last="Miller">William G. Miller</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Produce Safety and Microbiology Research Unit, U. S. Department of Agriculture, Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Produce Safety and Microbiology Research Unit, U. S. Department of Agriculture, Albany, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Leatherbarrow, Andrew J H" sort="Leatherbarrow, Andrew J H" uniqKey="Leatherbarrow A" first="Andrew J. H." last="Leatherbarrow">Andrew J. H. Leatherbarrow</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Bennett, Malcolm" sort="Bennett, Malcolm" uniqKey="Bennett M" first="Malcolm" last="Bennett">Malcolm Bennett</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Hall, Neil" sort="Hall, Neil" uniqKey="Hall N" first="Neil" last="Hall">Neil Hall</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Ashelford, Kevin E" sort="Ashelford, Kevin E" uniqKey="Ashelford K" first="Kevin E." last="Ashelford">Kevin E. Ashelford</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author><author><name sortKey="Winstanley, Craig" sort="Winstanley, Craig" uniqKey="Winstanley C" first="Craig" last="Winstanley">Craig Winstanley</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Institute of Infection and Global Health, University of Liverpool, Liverpool</wicri:regionArea><wicri:noRegion>Liverpool</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Arcobacter butzleri</italic> is considered to be an emerging human foodborne pathogen. The completion of an <italic>A. butzleri</italic> genome sequence along with microarray analysis of 13 isolates in 2007 revealed a surprising amount of diversity amongst <italic>A. butzleri</italic> isolates from humans, animals and food. In order to further investigate <italic>Arcobacter</italic> diversity, 792 faecal samples were collected from cattle on beef and dairy farms in the North West of England. <italic>Arcobacter</italic> was isolated from 42.5% of the samples and the diversity of the isolates was investigated using multilocus sequence typing. An <italic>A. butzleri</italic> whole genome sequence, obtained by 454 shotgun sequencing of an isolate from a clinically-healthy dairy cow, showed a number of differences when compared to the genome of a human-derived <italic>A. butzleri</italic> isolate. PCR-based prevalence assays for variable genes suggested some tentative evidence for source-related distributions. We also found evidence for phenotypic differences relating to growth capabilities between our representative human and cattle isolates. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23405126</article-id><article-id pub-id-type="pmc">3566208</article-id><article-id pub-id-type="publisher-id">PONE-D-12-10808</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0055240</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology</subject><subj-group><subject>Ecology</subject><subj-group><subject>Microbial Ecology</subject></subj-group></subj-group><subj-group><subject>Evolutionary Biology</subject><subj-group><subject>Comparative Genomics</subject><subject>Evolutionary Genetics</subject><subject>Population Genetics</subject></subj-group></subj-group><subj-group><subject>Genetics</subject><subj-group><subject>Molecular Genetics</subject></subj-group></subj-group><subj-group><subject>Genomics</subject><subj-group><subject>Comparative Genomics</subject><subject>Genome Sequencing</subject></subj-group></subj-group><subj-group><subject>Microbiology</subject><subj-group><subject>Bacteriology</subject><subject>Emerging Infectious Diseases</subject><subject>Microbial Ecology</subject><subject>Microbial Evolution</subject><subject>Microbial Metabolism</subject><subject>Microbial Pathogens</subject></subj-group></subj-group><subj-group><subject>Population Biology</subject><subj-group><subject>Epidemiology</subject><subj-group><subject>Genetic Epidemiology</subject><subject>Infectious Disease Epidemiology</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Medicine</subject><subj-group><subject>Gastroenterology and Hepatology</subject><subj-group><subject>Bacterial and Foodborne Illness</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Veterinary Science</subject><subj-group><subject>Veterinary Epidemiology</subject></subj-group><subj-group><subject>Veterinary Microbiology</subject></subj-group></subj-group></article-categories><title-group><article-title>Exploring the Diversity of <italic>Arcobacter butzleri</italic> from Cattle in the UK Using MLST and Whole Genome Sequencing</article-title><alt-title alt-title-type="running-head">Diversity of <italic>Arcobacter</italic> spp. in Cattle</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Merga</surname><given-names>J. Yvette</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>Williams</surname><given-names>Nicola J.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Miller</surname><given-names>William G.</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Leatherbarrow</surname><given-names>Andrew J. H.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bennett</surname><given-names>Malcolm</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Hall</surname><given-names>Neil</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ashelford</surname><given-names>Kevin E.</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Winstanley</surname><given-names>Craig</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Produce Safety and Microbiology Research Unit, U. S. Department of Agriculture, Albany, California, United States of America</addr-line></aff><aff id="aff3"><label>3</label><addr-line>Advanced Genomics Facility, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Horn</surname><given-names>Matthias</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>University of Vienna, Austria</addr-line></aff><author-notes><corresp id="cor1">* E-mail: <email>ysloane@liv.ac.uk</email></corresp><fn fn-type="conflict"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con"><p>Provided data for genome comparison: WGM. Conceived and designed the experiments: JYM NJW CW MB AJHL. Performed the experiments: JYM KEA NH. Analyzed the data: JYM CW. Wrote the paper: JYM.</p></fn></author-notes><pub-date pub-type="collection"><year>2013</year></pub-date><pub-date pub-type="epub"><day>6</day><month>2</month><year>2013</year></pub-date><volume>8</volume><issue>2</issue><elocation-id>e55240</elocation-id><history><date date-type="received"><day>16</day><month>4</month><year>2012</year></date><date date-type="accepted"><day>20</day><month>12</month><year>2012</year></date></history><permissions><copyright-year>2013</copyright-year><copyright-holder>Merga et al</copyright-holder><license><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><abstract><p><italic>Arcobacter butzleri</italic> is considered to be an emerging human foodborne pathogen. The completion of an <italic>A. butzleri</italic> genome sequence along with microarray analysis of 13 isolates in 2007 revealed a surprising amount of diversity amongst <italic>A. butzleri</italic> isolates from humans, animals and food. In order to further investigate <italic>Arcobacter</italic> diversity, 792 faecal samples were collected from cattle on beef and dairy farms in the North West of England. <italic>Arcobacter</italic> was isolated from 42.5% of the samples and the diversity of the isolates was investigated using multilocus sequence typing. An <italic>A. butzleri</italic> whole genome sequence, obtained by 454 shotgun sequencing of an isolate from a clinically-healthy dairy cow, showed a number of differences when compared to the genome of a human-derived <italic>A. butzleri</italic> isolate. PCR-based prevalence assays for variable genes suggested some tentative evidence for source-related distributions. We also found evidence for phenotypic differences relating to growth capabilities between our representative human and cattle isolates. Our genotypic and phenotypic observations suggest that some level of niche adaptation may have occurred in <italic>A. butzleri</italic>.</p></abstract><funding-group><funding-statement>This work was funded by the Higher Education Funding Council for England (HEFCE) and the Department for Environment, Food and Rural Affairs, as part of the Veterinary Training and Research Initiative. The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="12"></page-count></counts></article-meta></front></pmc><affiliations><list><country><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="Royaume-Uni"><noRegion><name sortKey="Merga, J Yvette" sort="Merga, J Yvette" uniqKey="Merga J" first="J. Yvette" last="Merga">J. Yvette Merga</name></noRegion><name sortKey="Ashelford, Kevin E" sort="Ashelford, Kevin E" uniqKey="Ashelford K" first="Kevin E." last="Ashelford">Kevin E. Ashelford</name><name sortKey="Bennett, Malcolm" sort="Bennett, Malcolm" uniqKey="Bennett M" first="Malcolm" last="Bennett">Malcolm Bennett</name><name sortKey="Hall, Neil" sort="Hall, Neil" uniqKey="Hall N" first="Neil" last="Hall">Neil Hall</name><name sortKey="Leatherbarrow, Andrew J H" sort="Leatherbarrow, Andrew J H" uniqKey="Leatherbarrow A" first="Andrew J. H." last="Leatherbarrow">Andrew J. H. Leatherbarrow</name><name sortKey="Williams, Nicola J" sort="Williams, Nicola J" uniqKey="Williams N" first="Nicola J." last="Williams">Nicola J. Williams</name><name sortKey="Winstanley, Craig" sort="Winstanley, Craig" uniqKey="Winstanley C" first="Craig" last="Winstanley">Craig Winstanley</name></country><country name="États-Unis"><region name="Californie"><name sortKey="Miller, William G" sort="Miller, William G" uniqKey="Miller W" first="William G." last="Miller">William G. Miller</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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