Detection of dengue virus serotypes 1, 2 and 3 in selected regions of Kenya: 2011–2014
Identifieur interne : 000039 ( Main/Curation ); précédent : 000038; suivant : 000040Detection of dengue virus serotypes 1, 2 and 3 in selected regions of Kenya: 2011–2014
Auteurs : Limbaso Konongoi [Kenya] ; Victor Ofula [Kenya] ; Albert Nyunja [Kenya] ; Samuel Owaka [Kenya] ; Hellen Koka [Kenya] ; Albina Makio [Kenya] ; Edith Koskei [Kenya] ; Fredrick Eyase [Kenya] ; Daniel Langat [Kenya] ; Randal J. Schoepp [États-Unis] ; Cynthia Ann Rossi [États-Unis] ; Ian Njeru [Kenya] ; Rodney Coldren [Kenya] ; Rosemary Sang [Kenya]Source :
- Virology Journal [ 1743-422X ] ; 2016.
Abstract
Dengue fever, a mosquito-borne disease, is associated with illness of varying severity in countries in the tropics and sub tropics. Dengue cases continue to be detected more frequently and its geographic range continues to expand. We report the largest documented laboratory confirmed circulation of dengue virus in parts of Kenya since 1982.
From September 2011 to December 2014, 868 samples from febrile patients were received from hospitals in Nairobi, northern and coastal Kenya. The immunoglobulin M enzyme linked immunosorbent assay (IgM ELISA) was used to test for the presence of IgM antibodies against dengue, yellow fever, West Nile and Zika. Reverse transcription polymerase chain reaction (RT-PCR) utilizing flavivirus family, yellow fever, West Nile, consensus and sero type dengue primers were used to detect acute arbovirus infections and determine the infecting serotypes. Representative samples of PCR positive samples for each of the three dengue serotypes detected were sequenced to confirm circulation of the various dengue serotypes.
Forty percent (345/868) of the samples tested positive for dengue by either IgM ELISA (14.6 %) or by RT-PCR (25.1 %). Three dengue serotypes 1–3 (DENV1-3) were detected by serotype specific RT-PCR and sequencing with their numbers varying from year to year and by region. The overall predominant serotype detected from 2011–2014 was DENV1 accounting for 44 % (96/218) of all the serotypes detected, followed by DENV2 accounting for 38.5 % (84/218) and then DENV3 which accounted for 17.4 % (38/218). Yellow fever, West Nile and Zika was not detected in any of the samples tested.
From 2011–2014 serotypes 1, 2 and 3 were detected in the Northern and Coastal parts of Kenya. This confirmed the occurrence of cases and active circulation of dengue in parts of Kenya. These results have documented three circulating serotypes and highlight the need for the establishment of active dengue surveillance to continuously detect cases, circulating serotypes, and determine dengue fever disease burden in the country and region.
Url:
DOI: 10.1186/s12985-016-0641-0
PubMed: 27814732
PubMed Central: 5097412
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PMC:5097412Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Detection of dengue virus serotypes 1, 2 and 3 in selected regions of Kenya: 2011–2014</title>
<author><name sortKey="Konongoi, Limbaso" sort="Konongoi, Limbaso" uniqKey="Konongoi L" first="Limbaso" last="Konongoi">Limbaso Konongoi</name>
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<author><name sortKey="Ofula, Victor" sort="Ofula, Victor" uniqKey="Ofula V" first="Victor" last="Ofula">Victor Ofula</name>
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<author><name sortKey="Owaka, Samuel" sort="Owaka, Samuel" uniqKey="Owaka S" first="Samuel" last="Owaka">Samuel Owaka</name>
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<author><name sortKey="Koka, Hellen" sort="Koka, Hellen" uniqKey="Koka H" first="Hellen" last="Koka">Hellen Koka</name>
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<author><name sortKey="Makio, Albina" sort="Makio, Albina" uniqKey="Makio A" first="Albina" last="Makio">Albina Makio</name>
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<author><name sortKey="Koskei, Edith" sort="Koskei, Edith" uniqKey="Koskei E" first="Edith" last="Koskei">Edith Koskei</name>
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<country xml:lang="fr">Kenya</country>
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<author><name sortKey="Eyase, Fredrick" sort="Eyase, Fredrick" uniqKey="Eyase F" first="Fredrick" last="Eyase">Fredrick Eyase</name>
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<country xml:lang="fr">Kenya</country>
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<author><name sortKey="Langat, Daniel" sort="Langat, Daniel" uniqKey="Langat D" first="Daniel" last="Langat">Daniel Langat</name>
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<author><name sortKey="Schoepp, Randal J" sort="Schoepp, Randal J" uniqKey="Schoepp R" first="Randal J." last="Schoepp">Randal J. Schoepp</name>
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<author><name sortKey="Rossi, Cynthia Ann" sort="Rossi, Cynthia Ann" uniqKey="Rossi C" first="Cynthia Ann" last="Rossi">Cynthia Ann Rossi</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
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<author><name sortKey="Njeru, Ian" sort="Njeru, Ian" uniqKey="Njeru I" first="Ian" last="Njeru">Ian Njeru</name>
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<country xml:lang="fr">Kenya</country>
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<author><name sortKey="Coldren, Rodney" sort="Coldren, Rodney" uniqKey="Coldren R" first="Rodney" last="Coldren">Rodney Coldren</name>
<affiliation wicri:level="1"><nlm:aff id="Aff2">United States Army Medical Research Directorate, P. O Box 606, Nairobi, Kenya</nlm:aff>
<country xml:lang="fr">Kenya</country>
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<wicri:noRegion>Nairobi</wicri:noRegion>
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<author><name sortKey="Sang, Rosemary" sort="Sang, Rosemary" uniqKey="Sang R" first="Rosemary" last="Sang">Rosemary Sang</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1">Kenya Medical Research Institute, P. O Box 54628-00200, Nairobi, Kenya</nlm:aff>
<country xml:lang="fr">Kenya</country>
<wicri:regionArea>Kenya Medical Research Institute, P. O Box 54628-00200, Nairobi</wicri:regionArea>
<wicri:noRegion>Nairobi</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="Aff2">United States Army Medical Research Directorate, P. O Box 606, Nairobi, Kenya</nlm:aff>
<country xml:lang="fr">Kenya</country>
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<wicri:noRegion>Nairobi</wicri:noRegion>
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</analytic>
<series><title level="j">Virology Journal</title>
<idno type="eISSN">1743-422X</idno>
<imprint><date when="2016">2016</date>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Dengue fever, a mosquito-borne disease, is associated with illness of varying severity in countries in the tropics and sub tropics. Dengue cases continue to be detected more frequently and its geographic range continues to expand. We report the largest documented laboratory confirmed circulation of dengue virus in parts of Kenya since 1982.</p>
</sec>
<sec><title>Methods</title>
<p>From September 2011 to December 2014, 868 samples from febrile patients were received from hospitals in Nairobi, northern and coastal Kenya. The immunoglobulin M enzyme linked immunosorbent assay (IgM ELISA) was used to test for the presence of IgM antibodies against dengue, yellow fever, West Nile and Zika. Reverse transcription polymerase chain reaction (RT-PCR) utilizing flavivirus family, yellow fever, West Nile, consensus and sero type dengue primers were used to detect acute arbovirus infections and determine the infecting serotypes. Representative samples of PCR positive samples for each of the three dengue serotypes detected were sequenced to confirm circulation of the various dengue serotypes.</p>
</sec>
<sec><title>Results</title>
<p>Forty percent (345/868) of the samples tested positive for dengue by either IgM ELISA (14.6 %) or by RT-PCR (25.1 %). Three dengue serotypes 1–3 (DENV1-3) were detected by serotype specific RT-PCR and sequencing with their numbers varying from year to year and by region. The overall predominant serotype detected from 2011–2014 was DENV1 accounting for 44 % (96/218) of all the serotypes detected, followed by DENV2 accounting for 38.5 % (84/218) and then DENV3 which accounted for 17.4 % (38/218). Yellow fever, West Nile and Zika was not detected in any of the samples tested.</p>
</sec>
<sec><title>Conclusion</title>
<p>From 2011–2014 serotypes 1, 2 and 3 were detected in the Northern and Coastal parts of Kenya. This confirmed the occurrence of cases and active circulation of dengue in parts of Kenya. These results have documented three circulating serotypes and highlight the need for the establishment of active dengue surveillance to continuously detect cases, circulating serotypes, and determine dengue fever disease burden in the country and region.</p>
</sec>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Murray, Ne" uniqKey="Murray N">NE Murray</name>
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<author><name sortKey="Quam, Mb" uniqKey="Quam M">MB Quam</name>
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<author><name sortKey="Wilder Smith, A" uniqKey="Wilder Smith A">A Wilder-Smith</name>
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<author><name sortKey="Ooi, Ee" uniqKey="Ooi E">EE Ooi</name>
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<author><name sortKey="Vasudevan, Sg" uniqKey="Vasudevan S">SG Vasudevan</name>
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<author><name sortKey="Gubler, Dj" uniqKey="Gubler D">DJ Gubler</name>
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