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Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature

Identifieur interne : 000137 ( Pmc/Corpus ); précédent : 000136; suivant : 000138

Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature

Auteurs : Amr Ahmed ; Andrew Arnold ; Luis Pedro Coelho ; Joshua Kangas ; Abdul-Saboor Sheikh ; Eric Xing ; William Cohen ; Robert F. Murphy

Source :

RBID : PMC:4075770

Abstract

The SLIF project combines text-mining and image processing to extract structured information from biomedical literature.

SLIF extracts images and their captions from published papers. The captions are automatically parsed for relevant biological entities (protein and cell type names), while the images are classified according to their type (e.g., micrograph or gel). Fluorescence microscopy images are further processed and classified according to the depicted subcellular localization.

The results of this process can be queried online using either a user-friendly web-interface or an XML-based web-service. As an alternative to the targeted query paradigm, SLIF also supports browsing the collection based on latent topic models which are derived from both the annotated text and the image data.

The SLIF web application, as well as labeled datasets used for training system components, is publicly available at http://slif.cbi.cmu.edu.


Url:
DOI: 10.1016/j.websem.2010.04.002
PubMed: 24991197
PubMed Central: 4075770

Links to Exploration step

PMC:4075770***** Acces problem to record *****\

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/OcrV1/Data/Pmc/Corpus

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000137 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd -nk 000137 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
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   |area=    OcrV1
   |flux=    Pmc
   |étape=   Corpus
   |type=    RBID
   |clé=     PMC:4075770
   |texte=   Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/RBID.i   -Sk "pubmed:24991197" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd   \
       | NlmPubMed2Wicri -a OcrV1
Wicri

This area was generated with Dilib version V0.6.32.
Data generation: Sat Nov 11 16:53:45 2017. Site generation: Mon Mar 11 23:15:16 2024