Bioregistry : A structured metadata repository for bioinformatic databases
Identifieur interne : 000518 ( PascalFrancis/Checkpoint ); précédent : 000517; suivant : 000519Bioregistry : A structured metadata repository for bioinformatic databases
Auteurs : Malika Smail-Tabbone [France] ; Shazia Osman [France] ; Nizar Messai [France] ; Amedeo Napoli [France] ; Marie-Dominique Devignes [France]Source :
- Lecture notes in computer science [ 0302-9743 ] ; 2005.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Base de données.
English descriptors
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Abstract
One of the major challenges in the post genomic era consists in exploiting the vast amounts of biological data stored in the numerous heterogeneous biological databases distributed worldwide. Most research projects in bioinformatics start with data retrieval from selected sources. However, identifying appropriate data sources is not trivial and requires the representation of the knowledge about data sources. We present here the BioRegistry project which aims at providing means to represent and exploit knowledge associated with biological databases. As a first step, a repository structure has been designed to organise metadata associated with databases consisting of five metadata categories: database identification, topics covered, quality information, access/availability, and tracking of the metadata. The BioRegistry model and its relationships with the DCMI (Dublin Core Metadata Initiative) are described. Prototypes with various functionalities to feed, maintain and exploit the repository are presented.
Affiliations:
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Pascal:06-0234368Le document en format XML
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level="j" type="main">Lecture notes in computer science</title><idno type="ISSN">0302-9743</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bioinformatics</term><term>Database</term><term>Metadata</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Métadonnée</term><term>Bioinformatique</term><term>Base donnée</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Base de données</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">One of the major challenges in the post genomic era consists in exploiting the vast amounts of biological data stored in the numerous heterogeneous biological databases distributed worldwide. Most research projects in bioinformatics start with data retrieval from selected sources. However, identifying appropriate data sources is not trivial and requires the representation of the knowledge about data sources. We present here the BioRegistry project which aims at providing means to represent and exploit knowledge associated with biological databases. As a first step, a repository structure has been designed to organise metadata associated with databases consisting of five metadata categories: database identification, topics covered, quality information, access/availability, and tracking of the metadata. The BioRegistry model and its relationships with the DCMI (Dublin Core Metadata Initiative) are described. Prototypes with various functionalities to feed, maintain and exploit the repository are presented.</div></front></TEI><inist><standard h6="B"><pA><fA01 i1="01" i2="1"><s0>0302-9743</s0></fA01><fA05><s2>3695</s2></fA05><fA08 i1="01" i2="1" l="ENG"><s1>Bioregistry : A structured metadata repository for bioinformatic databases</s1></fA08><fA09 i1="01" i2="1" l="ENG"><s1>Computational life sciences : First international symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, proceedings</s1></fA09><fA11 i1="01" i2="1"><s1>SMAIL-TABBONE (Malika)</s1></fA11><fA11 i1="02" i2="1"><s1>OSMAN (Shazia)</s1></fA11><fA11 i1="03" i2="1"><s1>MESSAI (Nizar)</s1></fA11><fA11 i1="04" i2="1"><s1>NAPOLI (Amedeo)</s1></fA11><fA11 i1="05" i2="1"><s1>DEVIGNES (Marie-Dominique)</s1></fA11><fA14 i1="01"><s1>UMR 7503 LORIA, BP 239</s1><s2>54506 Vandœuvre-lès-Nancy</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></fA14><fA20><s1>46-56</s1></fA20><fA21><s1>2005</s1></fA21><fA23 i1="01"><s0>ENG</s0></fA23><fA26 i1="01"><s0>3-540-29104-0</s0></fA26><fA43 i1="01"><s1>INIST</s1><s2>16343</s2><s5>354000124521410050</s5></fA43><fA44><s0>0000</s0><s1>© 2006 INIST-CNRS. All rights reserved.</s1></fA44><fA45><s0>28 ref.</s0></fA45><fA47 i1="01" i2="1"><s0>06-0234368</s0></fA47><fA60><s1>P</s1><s2>C</s2></fA60><fA61><s0>A</s0></fA61><fA64 i1="01" i2="1"><s0>Lecture notes in computer science</s0></fA64><fA66 i1="01"><s0>USA</s0></fA66><fC01 i1="01" l="ENG"><s0>One of the major challenges in the post genomic era consists in exploiting the vast amounts of biological data stored in the numerous heterogeneous biological databases distributed worldwide. Most research projects in bioinformatics start with data retrieval from selected sources. However, identifying appropriate data sources is not trivial and requires the representation of the knowledge about data sources. We present here the BioRegistry project which aims at providing means to represent and exploit knowledge associated with biological databases. As a first step, a repository structure has been designed to organise metadata associated with databases consisting of five metadata categories: database identification, topics covered, quality information, access/availability, and tracking of the metadata. The BioRegistry model and its relationships with the DCMI (Dublin Core Metadata Initiative) are described. Prototypes with various functionalities to feed, maintain and exploit the repository are presented.</s0></fC01><fC02 i1="01" i2="X"><s0>001D02B07D</s0></fC02><fC02 i1="02" i2="X"><s0>002A01B</s0></fC02><fC03 i1="01" i2="X" l="FRE"><s0>Métadonnée</s0><s5>01</s5></fC03><fC03 i1="01" i2="X" l="ENG"><s0>Metadata</s0><s5>01</s5></fC03><fC03 i1="01" i2="X" l="SPA"><s0>Metadatos</s0><s5>01</s5></fC03><fC03 i1="02" i2="X" l="FRE"><s0>Bioinformatique</s0><s5>02</s5></fC03><fC03 i1="02" i2="X" l="ENG"><s0>Bioinformatics</s0><s5>02</s5></fC03><fC03 i1="02" i2="X" l="SPA"><s0>Bioinformática</s0><s5>02</s5></fC03><fC03 i1="03" i2="X" l="FRE"><s0>Base donnée</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="ENG"><s0>Database</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="SPA"><s0>Base dato</s0><s5>03</s5></fC03><fN21><s1>149</s1></fN21></pA><pR><fA30 i1="01" i2="1" l="ENG"><s1>CompLife. International symposium</s1><s2>1</s2><s3>Konstanz DEU</s3><s4>2005-09-25</s4></fA30></pR></standard></inist><affiliations><list><country><li>France</li></country><region><li>Grand Est</li><li>Lorraine (région)</li></region><settlement><li>Vandœuvre-lès-Nancy</li></settlement></list><tree><country name="France"><noRegion><name sortKey="Smail Tabbone, Malika" sort="Smail Tabbone, Malika" uniqKey="Smail Tabbone M" first="Malika" last="Smail-Tabbone">Malika Smail-Tabbone</name></noRegion><name sortKey="Devignes, Marie Dominique" sort="Devignes, Marie Dominique" uniqKey="Devignes M" first="Marie-Dominique" last="Devignes">Marie-Dominique Devignes</name><name sortKey="Messai, Nizar" sort="Messai, Nizar" uniqKey="Messai N" first="Nizar" last="Messai">Nizar Messai</name><name sortKey="Napoli, Amedeo" sort="Napoli, Amedeo" uniqKey="Napoli A" first="Amedeo" last="Napoli">Amedeo Napoli</name><name sortKey="Osman, Shazia" sort="Osman, Shazia" uniqKey="Osman S" first="Shazia" last="Osman">Shazia Osman</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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