InforLorV4, Main, Merge, bibRecord, 002F83

HexServer: an FFT-based protein docking server powered by graphics processors

Identifieur interne : 002F83 ( Main/Merge ); précédent : 002F82; suivant : 002F84

HexServer: an FFT-based protein docking server powered by graphics processors

Auteurs : Gary Macindoe [Royaume-Uni] ; Lazaros Mavridis ; Vishwesh Venkatraman ; Marie-Dominique Devignes [France] ; David W. Ritchie

Source :

Nucleic Acids Research [ 0305-1048 ] ; 2010.

RBID : PMC:2896144

Abstract

HexServer (http://hexserver.loria.fr/) is the first Fourier transform (FFT)-based protein docking server to be powered by graphics processors. Using two graphics processors simultaneously, a typical 6D docking run takes ∼15 s, which is up to two orders of magnitude faster than conventional FFT-based docking approaches using comparable resolution and scoring functions. The server requires two protein structures in PDB format to be uploaded, and it produces a ranked list of up to 1000 docking predictions. Knowledge of one or both protein binding sites may be used to focus and shorten the calculation when such information is available. The first 20 predictions may be accessed individually, and a single file of all predicted orientations may be downloaded as a compressed multi-model PDB file. The server is publicly available and does not require any registration or identification by the user.

Url:

DOI: 10.1093/nar/gkq311
PubMed: 20444869
PubMed Central: 2896144

Links to Exploration step

PMC:2896144

Le document en format XML

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<author><name sortKey="Gatchell, Dw" uniqKey="Gatchell D">DW Gatchell</name>
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<author><name sortKey="Vajda, S" uniqKey="Vajda S">S Vajda</name>
</author>
<author><name sortKey="Camacho, Cj" uniqKey="Camacho C">CJ Camacho</name>
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<author><name sortKey="Vakser, Ia" uniqKey="Vakser I">IA Vakser</name>
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</analytic>
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<biblStruct><analytic><author><name sortKey="Chen, R" uniqKey="Chen R">R Chen</name>
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<author><name sortKey="Li, L" uniqKey="Li L">L Li</name>
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<author><name sortKey="Weng, Z" uniqKey="Weng Z">Z Weng</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Ritchie, Dw" uniqKey="Ritchie D">DW Ritchie</name>
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<author><name sortKey="Kemp, G Jl" uniqKey="Kemp G">G.JL Kemp</name>
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</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Lorraine/explor/InforLorV4/Data/Main/Merge

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002F83 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 002F83 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Lorraine
   |area=    InforLorV4
   |flux=    Main
   |étape=   Merge
   |type=    RBID
   |clé=     PMC:2896144
   |texte=   HexServer: an FFT-based protein docking server powered by graphics processors
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i   -Sk "pubmed:20444869" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd   \
       | NlmPubMed2Wicri -a InforLorV4

This area was generated with Dilib version V0.6.33.
Data generation: Mon Jun 10 21:56:28 2019. Site generation: Fri Feb 25 15:29:27 2022

Serveur d'exploration sur la recherche en informatique en Lorraine

HexServer: an FFT-based protein docking server powered by graphics processors

HexServer: an FFT-based protein docking server powered by graphics processors

Source :

Abstract

Links toward previous steps (curation, corpus...)

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Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration sur la recherche en informatique en Lorraine
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