The Occurrence of Plant Pathogenic Streptomyces spp. in Potato-growing Regions in Central Europe
Identifieur interne : 001067 ( Istex/Corpus ); précédent : 001066; suivant : 001068The Occurrence of Plant Pathogenic Streptomyces spp. in Potato-growing Regions in Central Europe
Auteurs : Iveta Pánková ; Vladimíra Sedláková ; Petr Sedlák ; Václav KrejzarSource :
- American Journal of Potato Research [ 1099-209X ] ; 2012-06-01.
English descriptors
Abstract
Abstract: Thirty-three isolates of Streptomyces from lesions on potato tubers and nine Streptomyces type strains were identified by fatty acid analysis and PCR and their pathogenicity was tested. The results were analysed using the unweighted pair group method algorithm. Pathogenicity and the genetic constitution of the pathogenicity island (PAI) were found to be correlated, and the results of fatty acid analysis and PCR correlated strongly for 34 % of the isolates. Altogether, 82 % of the isolates closely resembled the Streptomyces scabies type strain DSMZ 41658T included in this study. Isolates from regions with different meteorological and soil conditions and with different levels of pathogenicity formed clusters when grouped on the basis of fatty acid composition and DNA polymorphism. The most virulent isolates, namely Bee, Judita, and Madeleine, were identified as Streptomyces scabies. However, results of FAME, RAPD analysis, and pathogenicity tests differed significantly in 18 % of the isolates, and this cluster should be examined in greater detail in the future.
Resumen: Mediante un análisis de ácidos grasos y PCR, se identificaron 33 aislamientos y nueve variantes de Streptomyces de lesiones en tubérculos de papa y se probó su patogenicidad. Se analizaron los resultados mediante un método de algoritmos de grupos por pares no ponderados. Encontramos que la patogenicidad y la constitución de la isla de dicha patogenicidad (PAI) estaban correlacionados, y los resultados de los análisis de los ácidos grasos y la PCR se correlacionaron fuertemente para 34 % de los aislamientos. En conjunto, 82 % de los aislamientos tuvieron un parecido cercano a Streptomyces scabies variante tipo DSMZ 41658 T incluido en este estudio. Los aislamientos de regiones con diferentes condiciones meteorológicas y de suelo y con diferentes niveles de patogenicidad formaron congregados cuando se agruparon con base a la composición de los ácidos grasos y del polimorfismo de ADN. Los aislamientos mas virulentos, como Bee, Judita, y Madeleine, se identificaron como Streptomyces scabies. No obstante, los resultados de FAME, RAPD, y las pruebas de patogenicidad difirieron significativamente en 18 % de los aislamientos, y este agrupamiento debería examinarse en mayor detalle a futuro.
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DOI: 10.1007/s12230-012-9245-4
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<front><div type="abstract" xml:lang="en">Abstract: Thirty-three isolates of Streptomyces from lesions on potato tubers and nine Streptomyces type strains were identified by fatty acid analysis and PCR and their pathogenicity was tested. The results were analysed using the unweighted pair group method algorithm. Pathogenicity and the genetic constitution of the pathogenicity island (PAI) were found to be correlated, and the results of fatty acid analysis and PCR correlated strongly for 34 % of the isolates. Altogether, 82 % of the isolates closely resembled the Streptomyces scabies type strain DSMZ 41658T included in this study. Isolates from regions with different meteorological and soil conditions and with different levels of pathogenicity formed clusters when grouped on the basis of fatty acid composition and DNA polymorphism. The most virulent isolates, namely Bee, Judita, and Madeleine, were identified as Streptomyces scabies. However, results of FAME, RAPD analysis, and pathogenicity tests differed significantly in 18 % of the isolates, and this cluster should be examined in greater detail in the future.</div>
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<abstract xml:lang="en"><p>Abstract: Thirty-three isolates of Streptomyces from lesions on potato tubers and nine Streptomyces type strains were identified by fatty acid analysis and PCR and their pathogenicity was tested. The results were analysed using the unweighted pair group method algorithm. Pathogenicity and the genetic constitution of the pathogenicity island (PAI) were found to be correlated, and the results of fatty acid analysis and PCR correlated strongly for 34 % of the isolates. Altogether, 82 % of the isolates closely resembled the Streptomyces scabies type strain DSMZ 41658T included in this study. Isolates from regions with different meteorological and soil conditions and with different levels of pathogenicity formed clusters when grouped on the basis of fatty acid composition and DNA polymorphism. The most virulent isolates, namely Bee, Judita, and Madeleine, were identified as Streptomyces scabies. However, results of FAME, RAPD analysis, and pathogenicity tests differed significantly in 18 % of the isolates, and this cluster should be examined in greater detail in the future.</p>
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<ArticleHistory><RegistrationDate><Year>2012</Year>
<Month>4</Month>
<Day>5</Day>
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<OnlineDate><Year>2012</Year>
<Month>4</Month>
<Day>27</Day>
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<ArticleCopyright><CopyrightHolderName>Potato Association of America</CopyrightHolderName>
<CopyrightYear>2012</CopyrightYear>
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<ArticleHeader><AuthorGroup><Author AffiliationIDS="Aff1" CorrespondingAffiliationID="Aff1"><AuthorName DisplayOrder="Western"><GivenName>Iveta</GivenName>
<FamilyName>Pánková</FamilyName>
</AuthorName>
<Contact><Phone>+420-2-33022289</Phone>
<Email>pankovai@vurv.cz</Email>
</Contact>
</Author>
<Author AffiliationIDS="Aff2"><AuthorName DisplayOrder="Western"><GivenName>Vladimíra</GivenName>
<FamilyName>Sedláková</FamilyName>
</AuthorName>
</Author>
<Author AffiliationIDS="Aff2"><AuthorName DisplayOrder="Western"><GivenName>Petr</GivenName>
<FamilyName>Sedlák</FamilyName>
</AuthorName>
</Author>
<Author AffiliationIDS="Aff1"><AuthorName DisplayOrder="Western"><GivenName>Václav</GivenName>
<FamilyName>Krejzar</FamilyName>
</AuthorName>
</Author>
<Affiliation ID="Aff1"><OrgName>Crop Research Institute, v.v.i.</OrgName>
<OrgAddress><Street>Drnovská 507</Street>
<Postcode>161 06</Postcode>
<City>Prague</City>
<Country Code="CZ">Czech Republic</Country>
</OrgAddress>
</Affiliation>
<Affiliation ID="Aff2"><OrgDivision>Faculty of Agrobiology, Food and Natural Resources</OrgDivision>
<OrgName>Czech University of Live Sciences Prague</OrgName>
<OrgAddress><Street>Kamýcká 129</Street>
<Postcode>165 21</Postcode>
<City>Prague</City>
<Country Code="CZ">Czech Republic</Country>
</OrgAddress>
</Affiliation>
</AuthorGroup>
<Abstract ID="Abs1" Language="En" OutputMedium="All"><Heading>Abstract</Heading>
<Para>Thirty-three isolates of <Emphasis Type="Italic">Streptomyces</Emphasis>
from lesions on potato tubers and nine <Emphasis Type="Italic">Streptomyces</Emphasis>
type strains were identified by fatty acid analysis and PCR and their pathogenicity was tested. The results were analysed using the unweighted pair group method algorithm. Pathogenicity and the genetic constitution of the pathogenicity island (PAI) were found to be correlated, and the results of fatty acid analysis and PCR correlated strongly for 34 % of the isolates. Altogether, 82 % of the isolates closely resembled the <Emphasis Type="Italic">Streptomyces scabies</Emphasis>
type strain DSMZ 41658<Superscript>T</Superscript>
included in this study. Isolates from regions with different meteorological and soil conditions and with different levels of pathogenicity formed clusters when grouped on the basis of fatty acid composition and DNA polymorphism. The most virulent isolates, namely Bee, Judita, and Madeleine, were identified as <Emphasis Type="Italic">Streptomyces scabies.</Emphasis>
However, results of FAME, RAPD analysis, and pathogenicity tests differed significantly in 18 % of the isolates, and this cluster should be examined in greater detail in the future.</Para>
</Abstract>
<Abstract ID="Abs2" Language="Es" OutputMedium="All"><Heading>Resumen</Heading>
<Para>Mediante un análisis de ácidos grasos y PCR, se identificaron 33 aislamientos y nueve variantes de <Emphasis Type="Italic">Streptomyces</Emphasis>
de lesiones en tubérculos de papa y se probó su patogenicidad. Se analizaron los resultados mediante un método de algoritmos de grupos por pares no ponderados. Encontramos que la patogenicidad y la constitución de la isla de dicha patogenicidad (PAI) estaban correlacionados, y los resultados de los análisis de los ácidos grasos y la PCR se correlacionaron fuertemente para 34 % de los aislamientos. En conjunto, 82 % de los aislamientos tuvieron un parecido cercano a <Emphasis Type="Italic">Streptomyces scabies</Emphasis>
variante tipo DSMZ 41658 T incluido en este estudio. Los aislamientos de regiones con diferentes condiciones meteorológicas y de suelo y con diferentes niveles de patogenicidad formaron congregados cuando se agruparon con base a la composición de los ácidos grasos y del polimorfismo de ADN. Los aislamientos mas virulentos, como Bee, Judita, y Madeleine, se identificaron como <Emphasis Type="Italic">Streptomyces scabies</Emphasis>
. No obstante, los resultados de FAME, RAPD, y las pruebas de patogenicidad difirieron significativamente en 18 % de los aislamientos, y este agrupamiento debería examinarse en mayor detalle a futuro.</Para>
</Abstract>
<KeywordGroup Language="En" OutputMedium="All"><Heading>Keywords</Heading>
<Keyword>Common scab disease</Keyword>
<Keyword>Fatty acid composition</Keyword>
<Keyword>Polymerase chain reaction</Keyword>
<Keyword>Pathogenicity test</Keyword>
</KeywordGroup>
</ArticleHeader>
<NoBody></NoBody>
</Article>
</Issue>
</Volume>
</Journal>
</Publisher>
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<mods version="3.6"><titleInfo lang="en"><title>The Occurrence of Plant Pathogenic Streptomyces spp. in Potato-growing Regions in Central Europe</title>
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<titleInfo type="alternative" contentType="CDATA"><title>The Occurrence of Plant Pathogenic Streptomyces spp. in Potato-growing Regions in Central Europe</title>
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<name type="personal" displayLabel="corresp"><namePart type="given">Iveta</namePart>
<namePart type="family">Pánková</namePart>
<affiliation>Crop Research Institute, v.v.i., Drnovská 507, 161 06, Prague, Czech Republic</affiliation>
<affiliation>E-mail: pankovai@vurv.cz</affiliation>
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<name type="personal"><namePart type="given">Vladimíra</namePart>
<namePart type="family">Sedláková</namePart>
<affiliation>Faculty of Agrobiology, Food and Natural Resources, Czech University of Live Sciences Prague, Kamýcká 129, 165 21, Prague, Czech Republic</affiliation>
<role><roleTerm type="text">author</roleTerm>
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<name type="personal"><namePart type="given">Petr</namePart>
<namePart type="family">Sedlák</namePart>
<affiliation>Faculty of Agrobiology, Food and Natural Resources, Czech University of Live Sciences Prague, Kamýcká 129, 165 21, Prague, Czech Republic</affiliation>
<role><roleTerm type="text">author</roleTerm>
</role>
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<name type="personal"><namePart type="given">Václav</namePart>
<namePart type="family">Krejzar</namePart>
<affiliation>Crop Research Institute, v.v.i., Drnovská 507, 161 06, Prague, Czech Republic</affiliation>
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<abstract lang="en">Abstract: Thirty-three isolates of Streptomyces from lesions on potato tubers and nine Streptomyces type strains were identified by fatty acid analysis and PCR and their pathogenicity was tested. The results were analysed using the unweighted pair group method algorithm. Pathogenicity and the genetic constitution of the pathogenicity island (PAI) were found to be correlated, and the results of fatty acid analysis and PCR correlated strongly for 34 % of the isolates. Altogether, 82 % of the isolates closely resembled the Streptomyces scabies type strain DSMZ 41658T included in this study. Isolates from regions with different meteorological and soil conditions and with different levels of pathogenicity formed clusters when grouped on the basis of fatty acid composition and DNA polymorphism. The most virulent isolates, namely Bee, Judita, and Madeleine, were identified as Streptomyces scabies. However, results of FAME, RAPD analysis, and pathogenicity tests differed significantly in 18 % of the isolates, and this cluster should be examined in greater detail in the future.</abstract>
<abstract lang="es">Resumen: Mediante un análisis de ácidos grasos y PCR, se identificaron 33 aislamientos y nueve variantes de Streptomyces de lesiones en tubérculos de papa y se probó su patogenicidad. Se analizaron los resultados mediante un método de algoritmos de grupos por pares no ponderados. Encontramos que la patogenicidad y la constitución de la isla de dicha patogenicidad (PAI) estaban correlacionados, y los resultados de los análisis de los ácidos grasos y la PCR se correlacionaron fuertemente para 34 % de los aislamientos. En conjunto, 82 % de los aislamientos tuvieron un parecido cercano a Streptomyces scabies variante tipo DSMZ 41658 T incluido en este estudio. Los aislamientos de regiones con diferentes condiciones meteorológicas y de suelo y con diferentes niveles de patogenicidad formaron congregados cuando se agruparon con base a la composición de los ácidos grasos y del polimorfismo de ADN. Los aislamientos mas virulentos, como Bee, Judita, y Madeleine, se identificaron como Streptomyces scabies. No obstante, los resultados de FAME, RAPD, y las pruebas de patogenicidad difirieron significativamente en 18 % de los aislamientos, y este agrupamiento debería examinarse en mayor detalle a futuro.</abstract>
<subject lang="en"><genre>Keywords</genre>
<topic>Common scab disease</topic>
<topic>Fatty acid composition</topic>
<topic>Polymerase chain reaction</topic>
<topic>Pathogenicity test</topic>
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<relatedItem type="host"><titleInfo><title>American Journal of Potato Research</title>
<subTitle>The Official Journal of the Potato Association of America</subTitle>
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<titleInfo type="abbreviated"><title>Am. J. Pot Res</title>
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<dateIssued encoding="w3cdtf">2012-06-03</dateIssued>
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<subject><genre>Life Sciences</genre>
<topic>Plant Pathology</topic>
<topic>Plant Breeding/Biotechnology</topic>
<topic>Plant Sciences</topic>
<topic>Plant Genetics & Genomics</topic>
<topic>Agriculture</topic>
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<identifier type="ISSN">1099-209X</identifier>
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<identifier type="JournalID">12230</identifier>
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<part><date>2012</date>
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