Serveur d'exploration sur la recherche en informatique en Lorraine

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Combinatorial search on graphs motivated by bioinformatics applications: a brief survey

Identifieur interne : 001559 ( Hal/Corpus ); précédent : 001558; suivant : 001560

Combinatorial search on graphs motivated by bioinformatics applications: a brief survey

Auteurs : Mathilde Bouvel ; Vladimir Grebinski ; Gregory Kucherov

Source :

RBID : Hal:inria-00000885

Abstract

The goal of this paper is to present a brief survey of a collection of methods and results from the area of combinatorial search \cite{aig,du-hwa} focusing on graph reconstruction using queries of different type. The study is motivated by applications to genome sequencing.

Url:
DOI: 10.1007/11604686_2

Links to Exploration step

Hal:inria-00000885

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Combinatorial search on graphs motivated by bioinformatics applications: a brief survey</title>
<author>
<name sortKey="Bouvel, Mathilde" sort="Bouvel, Mathilde" uniqKey="Bouvel M" first="Mathilde" last="Bouvel">Mathilde Bouvel</name>
</author>
<author>
<name sortKey="Grebinski, Vladimir" sort="Grebinski, Vladimir" uniqKey="Grebinski V" first="Vladimir" last="Grebinski">Vladimir Grebinski</name>
</author>
<author>
<name sortKey="Kucherov, Gregory" sort="Kucherov, Gregory" uniqKey="Kucherov G" first="Gregory" last="Kucherov">Gregory Kucherov</name>
<affiliation>
<hal:affiliation type="researchteam" xml:id="struct-2345" status="OLD">
<idno type="RNSR">200221405M</idno>
<orgName>Applying discrete algorithms to genomics</orgName>
<orgName type="acronym">ADAGE</orgName>
<desc>
<address>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/equipes/adage</ref>
</desc>
<listRelation>
<relation active="#struct-160" type="direct"></relation>
<relation name="UMR7503" active="#struct-441569" type="indirect"></relation>
<relation active="#struct-300009" type="indirect"></relation>
<relation active="#struct-300291" type="indirect"></relation>
<relation active="#struct-300292" type="indirect"></relation>
<relation active="#struct-300293" type="indirect"></relation>
<relation active="#struct-2496" type="direct"></relation>
</listRelation>
<tutelles>
<tutelle active="#struct-160" type="direct">
<org type="laboratory" xml:id="struct-160" status="OLD">
<orgName>Laboratoire Lorrain de Recherche en Informatique et ses Applications</orgName>
<orgName type="acronym">LORIA</orgName>
<desc>
<address>
<addrLine>Campus Scientifique BP 239 54506 Vandoeuvre-lès-Nancy Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.loria.fr</ref>
</desc>
<listRelation>
<relation name="UMR7503" active="#struct-441569" type="direct"></relation>
<relation active="#struct-300009" type="direct"></relation>
<relation active="#struct-300291" type="direct"></relation>
<relation active="#struct-300292" type="direct"></relation>
<relation active="#struct-300293" type="direct"></relation>
</listRelation>
</org>
</tutelle>
<tutelle name="UMR7503" active="#struct-441569" type="indirect">
<org type="institution" xml:id="struct-441569" status="VALID">
<idno type="ISNI">0000000122597504</idno>
<idno type="IdRef">02636817X</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc>
<address>
<country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300009" type="indirect">
<org type="institution" xml:id="struct-300009" status="VALID">
<orgName>Institut National de Recherche en Informatique et en Automatique</orgName>
<orgName type="acronym">Inria</orgName>
<desc>
<address>
<addrLine>Domaine de VoluceauRocquencourt - BP 10578153 Le Chesnay Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/en/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300291" type="indirect">
<org type="institution" xml:id="struct-300291" status="OLD">
<orgName>Université Henri Poincaré - Nancy 1</orgName>
<orgName type="acronym">UHP</orgName>
<date type="end">2011-12-31</date>
<desc>
<address>
<addrLine>24-30 rue Lionnois, BP 60120, 54 003 NANCY cedex, France</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300292" type="indirect">
<org type="institution" xml:id="struct-300292" status="OLD">
<orgName>Université Nancy 2</orgName>
<date type="end">2011-12-31</date>
<desc>
<address>
<addrLine>91 avenue de la Libération, BP 454, 54001 Nancy cedex</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300293" type="indirect">
<org type="institution" xml:id="struct-300293" status="OLD">
<orgName>Institut National Polytechnique de Lorraine</orgName>
<orgName type="acronym">INPL</orgName>
<date type="end">2011-12-31</date>
<desc>
<address>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-2496" type="direct">
<org type="laboratory" xml:id="struct-2496" status="OLD">
<orgName>INRIA Lorraine</orgName>
<desc>
<address>
<addrLine>615 rue du Jardin Botanique 54600 Villers-lès-Nancy</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/centre-de-recherche-inria/nancy-grand-est</ref>
</desc>
<listRelation>
<relation active="#struct-300009" type="direct"></relation>
</listRelation>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">HAL</idno>
<idno type="RBID">Hal:inria-00000885</idno>
<idno type="halId">inria-00000885</idno>
<idno type="halUri">https://hal.inria.fr/inria-00000885</idno>
<idno type="url">https://hal.inria.fr/inria-00000885</idno>
<idno type="doi">10.1007/11604686_2</idno>
<date when="2005-06-24">2005-06-24</date>
<idno type="wicri:Area/Hal/Corpus">001559</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Combinatorial search on graphs motivated by bioinformatics applications: a brief survey</title>
<author>
<name sortKey="Bouvel, Mathilde" sort="Bouvel, Mathilde" uniqKey="Bouvel M" first="Mathilde" last="Bouvel">Mathilde Bouvel</name>
</author>
<author>
<name sortKey="Grebinski, Vladimir" sort="Grebinski, Vladimir" uniqKey="Grebinski V" first="Vladimir" last="Grebinski">Vladimir Grebinski</name>
</author>
<author>
<name sortKey="Kucherov, Gregory" sort="Kucherov, Gregory" uniqKey="Kucherov G" first="Gregory" last="Kucherov">Gregory Kucherov</name>
<affiliation>
<hal:affiliation type="researchteam" xml:id="struct-2345" status="OLD">
<idno type="RNSR">200221405M</idno>
<orgName>Applying discrete algorithms to genomics</orgName>
<orgName type="acronym">ADAGE</orgName>
<desc>
<address>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/equipes/adage</ref>
</desc>
<listRelation>
<relation active="#struct-160" type="direct"></relation>
<relation name="UMR7503" active="#struct-441569" type="indirect"></relation>
<relation active="#struct-300009" type="indirect"></relation>
<relation active="#struct-300291" type="indirect"></relation>
<relation active="#struct-300292" type="indirect"></relation>
<relation active="#struct-300293" type="indirect"></relation>
<relation active="#struct-2496" type="direct"></relation>
</listRelation>
<tutelles>
<tutelle active="#struct-160" type="direct">
<org type="laboratory" xml:id="struct-160" status="OLD">
<orgName>Laboratoire Lorrain de Recherche en Informatique et ses Applications</orgName>
<orgName type="acronym">LORIA</orgName>
<desc>
<address>
<addrLine>Campus Scientifique BP 239 54506 Vandoeuvre-lès-Nancy Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.loria.fr</ref>
</desc>
<listRelation>
<relation name="UMR7503" active="#struct-441569" type="direct"></relation>
<relation active="#struct-300009" type="direct"></relation>
<relation active="#struct-300291" type="direct"></relation>
<relation active="#struct-300292" type="direct"></relation>
<relation active="#struct-300293" type="direct"></relation>
</listRelation>
</org>
</tutelle>
<tutelle name="UMR7503" active="#struct-441569" type="indirect">
<org type="institution" xml:id="struct-441569" status="VALID">
<idno type="ISNI">0000000122597504</idno>
<idno type="IdRef">02636817X</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc>
<address>
<country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300009" type="indirect">
<org type="institution" xml:id="struct-300009" status="VALID">
<orgName>Institut National de Recherche en Informatique et en Automatique</orgName>
<orgName type="acronym">Inria</orgName>
<desc>
<address>
<addrLine>Domaine de VoluceauRocquencourt - BP 10578153 Le Chesnay Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/en/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300291" type="indirect">
<org type="institution" xml:id="struct-300291" status="OLD">
<orgName>Université Henri Poincaré - Nancy 1</orgName>
<orgName type="acronym">UHP</orgName>
<date type="end">2011-12-31</date>
<desc>
<address>
<addrLine>24-30 rue Lionnois, BP 60120, 54 003 NANCY cedex, France</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300292" type="indirect">
<org type="institution" xml:id="struct-300292" status="OLD">
<orgName>Université Nancy 2</orgName>
<date type="end">2011-12-31</date>
<desc>
<address>
<addrLine>91 avenue de la Libération, BP 454, 54001 Nancy cedex</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300293" type="indirect">
<org type="institution" xml:id="struct-300293" status="OLD">
<orgName>Institut National Polytechnique de Lorraine</orgName>
<orgName type="acronym">INPL</orgName>
<date type="end">2011-12-31</date>
<desc>
<address>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-2496" type="direct">
<org type="laboratory" xml:id="struct-2496" status="OLD">
<orgName>INRIA Lorraine</orgName>
<desc>
<address>
<addrLine>615 rue du Jardin Botanique 54600 Villers-lès-Nancy</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/centre-de-recherche-inria/nancy-grand-est</ref>
</desc>
<listRelation>
<relation active="#struct-300009" type="direct"></relation>
</listRelation>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
</affiliation>
</author>
</analytic>
<idno type="DOI">10.1007/11604686_2</idno>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">The goal of this paper is to present a brief survey of a collection of methods and results from the area of combinatorial search \cite{aig,du-hwa} focusing on graph reconstruction using queries of different type. The study is motivated by applications to genome sequencing.</div>
</front>
</TEI>
<hal api="V3">
<titleStmt>
<title xml:lang="en">Combinatorial search on graphs motivated by bioinformatics applications: a brief survey</title>
<author role="aut">
<persName>
<forename type="first">Mathilde</forename>
<surname>Bouvel</surname>
</persName>
<email></email>
<idno type="halauthor">72192</idno>
</author>
<author role="aut">
<persName>
<forename type="first">Vladimir</forename>
<surname>Grebinski</surname>
</persName>
<email></email>
<idno type="halauthor">72193</idno>
</author>
<author role="aut">
<persName>
<forename type="first">Gregory</forename>
<surname>Kucherov</surname>
</persName>
<email>Gregory.Kucherov@lifl.fr</email>
<idno type="halauthor">66520</idno>
<affiliation ref="#struct-2345"></affiliation>
</author>
<editor role="depositor">
<persName>
<forename>Gregory</forename>
<surname>Kucherov</surname>
</persName>
<email>Gregory.Kucherov@univ-mlv.fr</email>
</editor>
</titleStmt>
<editionStmt>
<edition n="v1" type="current">
<date type="whenSubmitted">2005-11-30 19:49:44</date>
<date type="whenModified">2016-05-19 01:09:21</date>
<date type="whenReleased">2005-11-30 19:49:44</date>
<date type="whenProduced">2005-06-24</date>
</edition>
<respStmt>
<resp>contributor</resp>
<name key="104025">
<persName>
<forename>Gregory</forename>
<surname>Kucherov</surname>
</persName>
<email>Gregory.Kucherov@univ-mlv.fr</email>
</name>
</respStmt>
</editionStmt>
<publicationStmt>
<distributor>CCSD</distributor>
<idno type="halId">inria-00000885</idno>
<idno type="halUri">https://hal.inria.fr/inria-00000885</idno>
<idno type="halBibtex">bouvel:inria-00000885</idno>
<idno type="halRefHtml">31st International Workshop on Graph-Theoretic Concepts in Computer Science - WG'2005, Jun 2005, Metz/France, Springer verlag, 3787, pp.16-27, 2005, Lecture Notes in Computer Science; Graph-Theoretic Concepts in Computer Science. <10.1007/11604686_2></idno>
<idno type="halRef">31st International Workshop on Graph-Theoretic Concepts in Computer Science - WG'2005, Jun 2005, Metz/France, Springer verlag, 3787, pp.16-27, 2005, Lecture Notes in Computer Science; Graph-Theoretic Concepts in Computer Science. <10.1007/11604686_2></idno>
</publicationStmt>
<seriesStmt>
<idno type="stamp" n="INRIA">INRIA - Institut National de Recherche en Informatique et en Automatique</idno>
<idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
<idno type="stamp" n="INPL">Institut National Polytechnique de Lorraine</idno>
<idno type="stamp" n="LORIA2">Publications du LORIA</idno>
<idno type="stamp" n="LORIA">LORIA - Laboratoire Lorrain de Recherche en Informatique et ses Applications</idno>
<idno type="stamp" n="INRIA-NANCY-GRAND-EST">INRIA Nancy - Grand Est</idno>
<idno type="stamp" n="UNIV-LORRAINE">Université de Lorraine</idno>
<idno type="stamp" n="INRIA-LORRAINE">INRIA Nancy - Grand Est</idno>
<idno type="stamp" n="LABO-LORIA-SET" p="LORIA">LABO-LORIA-SET</idno>
</seriesStmt>
<notesStmt>
<note type="audience" n="1">Not set</note>
<note type="invited" n="1">Yes</note>
<note type="popular" n="0">No</note>
<note type="peer" n="1">Yes</note>
<note type="proceedings" n="1">Yes</note>
</notesStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Combinatorial search on graphs motivated by bioinformatics applications: a brief survey</title>
<author role="aut">
<persName>
<forename type="first">Mathilde</forename>
<surname>Bouvel</surname>
</persName>
<idno type="halAuthorId">72192</idno>
</author>
<author role="aut">
<persName>
<forename type="first">Vladimir</forename>
<surname>Grebinski</surname>
</persName>
<idno type="halAuthorId">72193</idno>
</author>
<author role="aut">
<persName>
<forename type="first">Gregory</forename>
<surname>Kucherov</surname>
</persName>
<email>Gregory.Kucherov@lifl.fr</email>
<idno type="halAuthorId">66520</idno>
<affiliation ref="#struct-2345"></affiliation>
</author>
</analytic>
<monogr>
<meeting>
<title>31st International Workshop on Graph-Theoretic Concepts in Computer Science - WG'2005</title>
<date type="start">2005-06-24</date>
<settlement>Metz/France</settlement>
</meeting>
<imprint>
<publisher>Springer verlag</publisher>
<biblScope unit="serie"></biblScope>
<biblScope unit="volume">3787</biblScope>
<biblScope unit="pp">16-27</biblScope>
<date type="datePub">2005-06-24</date>
</imprint>
</monogr>
<idno type="doi">10.1007/11604686_2</idno>
</biblStruct>
</sourceDesc>
<profileDesc>
<langUsage>
<language ident="en">English</language>
</langUsage>
<textClass>
<classCode scheme="halDomain" n="info.info-ds">Computer Science [cs]/Data Structures and Algorithms [cs.DS]</classCode>
<classCode scheme="halDomain" n="sdv.bbm.gtp">Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]</classCode>
<classCode scheme="halTypology" n="COMM">Conference papers</classCode>
</textClass>
<abstract xml:lang="en">The goal of this paper is to present a brief survey of a collection of methods and results from the area of combinatorial search \cite{aig,du-hwa} focusing on graph reconstruction using queries of different type. The study is motivated by applications to genome sequencing.</abstract>
</profileDesc>
</hal>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Lorraine/explor/InforLorV4/Data/Hal/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001559 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Hal/Corpus/biblio.hfd -nk 001559 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Lorraine
   |area=    InforLorV4
   |flux=    Hal
   |étape=   Corpus
   |type=    RBID
   |clé=     Hal:inria-00000885
   |texte=   Combinatorial search on graphs motivated by bioinformatics applications: a brief survey
}}

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Mon Jun 10 21:56:28 2019. Site generation: Fri Feb 25 15:29:27 2022