Mucosal and Cutaneous Human Papillomaviruses Detected in Raw Sewages
Identifieur interne : 000174 ( Ncbi/Curation ); précédent : 000173; suivant : 000175Mucosal and Cutaneous Human Papillomaviruses Detected in Raw Sewages
Auteurs : Giuseppina La Rosa [Italie] ; Marta Fratini [Italie] ; Luisa Accardi [Italie] ; Graziana D'Oro [Italie] ; Simonetta Della Libera [Italie] ; Michele Muscillo [Italie] ; Paola Di Bonito [Italie]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ADN, Données de séquences moléculaires, Eaux d'égout (virologie), Humains, Infections à papillomavirus (virologie), Italie, Muqueuse (virologie), Papillomaviridae (génétique), Papillomaviridae (isolement et purification), Peau (virologie), Phylogénie, Réaction de polymérisation en chaîne, Séquence nucléotidique.
- MESH :
- génétique : Papillomaviridae.
- isolement et purification : Papillomaviridae.
- virologie : Eaux d'égout, Infections à papillomavirus, Muqueuse, Peau.
- Analyse de séquence d'ADN, Données de séquences moléculaires, Humains, Italie, Phylogénie, Réaction de polymérisation en chaîne, Séquence nucléotidique.
- Wicri :
- geographic : Italie.
English descriptors
- KwdEn :
- MESH :
- chemical , virology : Sewage.
- geographic : Italy.
- genetics : Papillomaviridae.
- isolation & purification : Papillomaviridae.
- virology : Mucous Membrane, Papillomavirus Infections, Skin.
- Base Sequence, Humans, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA.
Abstract
Epitheliotropic viruses can find their way into sewage. The aim of the present study was to investigate the occurrence, distribution, and genetic diversity of Human Papillomaviruses (HPVs) in urban wastewaters. Sewage samples were collected from treatment plants distributed throughout Italy. The DNA extracted from these samples was analyzed by PCR using five PV-specific sets of primers targeting the L1 (GP5/GP6, MY09/MY11, FAP59/64, SKF/SKR) and E1 regions (PM-A/PM-B), according to the protocols previously validated for the detection of mucosal and cutaneous HPV genotypes. PCR products underwent sequencing analysis and the sequences were aligned to reference genomes from the Papillomavirus Episteme database. Phylogenetic analysis was then performed to assess the genetic relationships among the different sequences and between the sequences of the samples and those of the prototype strains. A broad spectrum of sequences related to mucosal and cutaneous HPV types was detected in 81% of the sewage samples analyzed. Surprisingly, sequences related to the anogenital HPV6 and 11 were detected in 19% of the samples, and sequences related to the “high risk” oncogenic HPV16 were identified in two samples. Sequences related to HPV9, HPV20, HPV25, HPV76, HPV80, HPV104, HPV110, HPV111, HPV120 and HPV145 beta Papillomaviruses were detected in 76% of the samples. In addition, similarity searches and phylogenetic analysis of some sequences suggest that they could belong to putative new genotypes of the beta genus. In this study, for the first time, the presence of HPV viruses strongly related to human cancer is reported in sewage samples. Our data increases the knowledge of HPV genomic diversity and suggests that virological analysis of urban sewage can provide key information useful in supporting epidemiological studies.
Url:
DOI: 10.1371/journal.pone.0052391
PubMed: 23341898
PubMed Central: 3544852
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PMC:3544852Le document en format XML
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Sanità, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence</term><term>Humans</term><term>Italy</term><term>Molecular Sequence Data</term><term>Mucous Membrane (virology)</term><term>Papillomaviridae (genetics)</term><term>Papillomaviridae (isolation & purification)</term><term>Papillomavirus Infections (virology)</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term><term>Sewage (virology)</term><term>Skin (virology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Données de séquences moléculaires</term><term>Eaux d'égout (virologie)</term><term>Humains</term><term>Infections à papillomavirus (virologie)</term><term>Italie</term><term>Muqueuse (virologie)</term><term>Papillomaviridae (génétique)</term><term>Papillomaviridae (isolement et purification)</term><term>Peau (virologie)</term><term>Phylogénie</term><term>Réaction de polymérisation en chaîne</term><term>Séquence nucléotidique</term></keywords><keywords scheme="MESH" type="chemical" qualifier="virology" xml:lang="en"><term>Sewage</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Italy</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Papillomaviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Papillomaviridae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Papillomaviridae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Papillomaviridae</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Eaux d'égout</term><term>Infections à papillomavirus</term><term>Muqueuse</term><term>Peau</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Mucous Membrane</term><term>Papillomavirus Infections</term><term>Skin</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Données de séquences moléculaires</term><term>Humains</term><term>Italie</term><term>Phylogénie</term><term>Réaction de polymérisation en chaîne</term><term>Séquence nucléotidique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Italie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Epitheliotropic viruses can find their way into sewage. The aim of the present study was to investigate the occurrence, distribution, and genetic diversity of Human Papillomaviruses (HPVs) in urban wastewaters. Sewage samples were collected from treatment plants distributed throughout Italy. The DNA extracted from these samples was analyzed by PCR using five PV-specific sets of primers targeting the L1 (GP5/GP6, MY09/MY11, FAP59/64, SKF/SKR) and E1 regions (PM-A/PM-B), according to the protocols previously validated for the detection of mucosal and cutaneous HPV genotypes. PCR products underwent sequencing analysis and the sequences were aligned to reference genomes from the Papillomavirus Episteme database. Phylogenetic analysis was then performed to assess the genetic relationships among the different sequences and between the sequences of the samples and those of the prototype strains. A broad spectrum of sequences related to mucosal and cutaneous HPV types was detected in 81% of the sewage samples analyzed. Surprisingly, sequences related to the anogenital HPV6 and 11 were detected in 19% of the samples, and sequences related to the “high risk” oncogenic HPV16 were identified in two samples. Sequences related to HPV9, HPV20, HPV25, HPV76, HPV80, HPV104, HPV110, HPV111, HPV120 and HPV145 beta Papillomaviruses were detected in 76% of the samples. In addition, similarity searches and phylogenetic analysis of some sequences suggest that they could belong to putative new genotypes of the beta genus. In this study, for the first time, the presence of HPV viruses strongly related to human cancer is reported in sewage samples. Our data increases the knowledge of HPV genomic diversity and suggests that virological analysis of urban sewage can provide key information useful in supporting epidemiological studies.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Bernard, Hu" uniqKey="Bernard H">HU Bernard</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Van, Dk" uniqKey="Van D">DK van</name></author><author><name sortKey="Hausen, H" uniqKey="Hausen H">H Hausen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ferlay, J" uniqKey="Ferlay J">J Ferlay</name></author><author><name sortKey="Shin, Hr" uniqKey="Shin H">HR Shin</name></author><author><name sortKey="Bray, F" uniqKey="Bray F">F Bray</name></author><author><name sortKey="Forman, D" uniqKey="Forman D">D Forman</name></author><author><name 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