Identification of a Novel Human Papillomavirus, Type HPV199, Isolated from a Nasopharynx and Anal Canal, and Complete Genomic Characterization of Papillomavirus Species Gamma-12
Identifieur interne : 000236 ( Ncbi/Checkpoint ); précédent : 000235; suivant : 000237Identification of a Novel Human Papillomavirus, Type HPV199, Isolated from a Nasopharynx and Anal Canal, and Complete Genomic Characterization of Papillomavirus Species Gamma-12
Auteurs : Anja Oštrbenk [Slovénie] ; Boštjan J. Kocjan [Slovénie] ; Lea Hošnjak [Slovénie] ; Jingjing Li [République populaire de Chine] ; Qiuju Deng [République populaire de Chine] ; Anja Šterbenc [Slovénie] ; Mario Poljak [Slovénie]Source :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
The novel human papillomavirus type 199 (HPV199) was initially identified in a nasopharyngeal swab sample obtained from a 25 year-old immunocompetent male. The complete genome of HPV199 is 7,184 bp in length with a GC content of 36.5%. Comparative genomic characterization of HPV199 and its closest relatives showed the classical genomic organization of Gammapapillomaviruses (
Url:
DOI: 10.1371/journal.pone.0138628
PubMed: 26375679
PubMed Central: 4574437
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Identification of a Novel Human Papillomavirus, Type HPV199, Isolated from a Nasopharynx and Anal Canal, and Complete Genomic Characterization of Papillomavirus Species <italic>Gamma</italic>-12</title><author><name sortKey="Ostrbenk, Anja" sort="Ostrbenk, Anja" uniqKey="Ostrbenk A" first="Anja" last="Oštrbenk">Anja Oštrbenk</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Kocjan, Bostjan J" sort="Kocjan, Bostjan J" uniqKey="Kocjan B" first="Boštjan J." last="Kocjan">Boštjan J. Kocjan</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Hosnjak, Lea" sort="Hosnjak, Lea" uniqKey="Hosnjak L" first="Lea" last="Hošnjak">Lea Hošnjak</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Li, Jingjing" sort="Li, Jingjing" uniqKey="Li J" first="Jingjing" last="Li">Jingjing Li</name><affiliation wicri:level="3"><nlm:aff id="aff002"><addr-line>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Deng, Qiuju" sort="Deng, Qiuju" uniqKey="Deng Q" first="Qiuju" last="Deng">Qiuju Deng</name><affiliation wicri:level="3"><nlm:aff id="aff002"><addr-line>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sterbenc, Anja" sort="Sterbenc, Anja" uniqKey="Sterbenc A" first="Anja" last="Šterbenc">Anja Šterbenc</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Poljak, Mario" sort="Poljak, Mario" uniqKey="Poljak M" first="Mario" last="Poljak">Mario Poljak</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26375679</idno><idno type="pmc">4574437</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574437</idno><idno type="RBID">PMC:4574437</idno><idno type="doi">10.1371/journal.pone.0138628</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000007</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000007</idno><idno type="wicri:Area/Pmc/Curation">000007</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000007</idno><idno type="wicri:Area/Pmc/Checkpoint">000031</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000031</idno><idno type="wicri:Area/Ncbi/Merge">000236</idno><idno type="wicri:Area/Ncbi/Curation">000236</idno><idno type="wicri:Area/Ncbi/Checkpoint">000236</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Identification of a Novel Human Papillomavirus, Type HPV199, Isolated from a Nasopharynx and Anal Canal, and Complete Genomic Characterization of Papillomavirus Species <italic>Gamma</italic>-12</title><author><name sortKey="Ostrbenk, Anja" sort="Ostrbenk, Anja" uniqKey="Ostrbenk A" first="Anja" last="Oštrbenk">Anja Oštrbenk</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Kocjan, Bostjan J" sort="Kocjan, Bostjan J" uniqKey="Kocjan B" first="Boštjan J." last="Kocjan">Boštjan J. Kocjan</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Hosnjak, Lea" sort="Hosnjak, Lea" uniqKey="Hosnjak L" first="Lea" last="Hošnjak">Lea Hošnjak</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Li, Jingjing" sort="Li, Jingjing" uniqKey="Li J" first="Jingjing" last="Li">Jingjing Li</name><affiliation wicri:level="3"><nlm:aff id="aff002"><addr-line>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Deng, Qiuju" sort="Deng, Qiuju" uniqKey="Deng Q" first="Qiuju" last="Deng">Qiuju Deng</name><affiliation wicri:level="3"><nlm:aff id="aff002"><addr-line>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sterbenc, Anja" sort="Sterbenc, Anja" uniqKey="Sterbenc A" first="Anja" last="Šterbenc">Anja Šterbenc</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Poljak, Mario" sort="Poljak, Mario" uniqKey="Poljak M" first="Mario" last="Poljak">Mario Poljak</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia</addr-line></nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The novel human papillomavirus type 199 (HPV199) was initially identified in a nasopharyngeal swab sample obtained from a 25 year-old immunocompetent male. The complete genome of HPV199 is 7,184 bp in length with a GC content of 36.5%. Comparative genomic characterization of HPV199 and its closest relatives showed the classical genomic organization of Gammapapillomaviruses (<italic>Gamma</italic>-PVs). HPV199 has seven major open reading frames (ORFs), encoding five early (E1, E2, E4, E6, and E7) and two late (L1 and L2) proteins, while lacking the E5 ORF. The long control region (LCR) of 513 bp is located between the L1 and E6 ORFs. Phylogenetic analysis additionally confirmed that HPV-199 clusters into the <italic>Gamma</italic>-PV genus, species <italic>Gamma</italic>-12, additionally containing HPV127, HV132, HPV148, HPV165, and three putative HPV types: KC5, CG2 and CG3. HPV199 is most closely related to HPV127 (nucleotide identity 77%). The complete viral genome sequence of additional HPV199 isolate was determined from anal canal swab sample. Two HPV199 complete viral sequences exhibit 99.4% nucleotide identity. To the best of our knowledge, this is the first member of <italic>Gamma</italic>-PV with complete nucleotide sequences determined from two independent clinical samples. To evaluate the tissue tropism of the novel HPV type, 916 clinical samples were tested using HPV199 type-specific real-time PCR: HPV199 was detected in 2/76 tissue samples of histologically confirmed common warts, 2/108 samples of eyebrow hair follicles, 2/137 anal canal swabs obtained from individuals with clinically evident anal pathology, 4/184 nasopharyngeal swabs and 3/411 cervical swabs obtained from women with normal cervical cytology. Although HPV199 was found in 1.4% of cutaneous and mucosal samples only, it exhibits dual tissue tropism. According to the results of our study and literature data, dual tropism of all <italic>Gamma</italic>-12 members is highly possible.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Bernard, Hu" uniqKey="Bernard H">HU Bernard</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K van Doorslaer</name></author><author><name sortKey="Zur Hausen, H" uniqKey="Zur Hausen H">H Zur Hausen</name></author><author><name sortKey="De Villiers, Em" uniqKey="De Villiers E">EM de Villiers</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cubie, Ha" uniqKey="Cubie H">HA Cubie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bzhalava, D" uniqKey="Bzhalava D">D Bzhalava</name></author><author><name 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uniqKey="Poljak M">M Poljak</name></author><author><name sortKey="Kocjan, Bj" uniqKey="Kocjan B">BJ Kocjan</name></author><author><name sortKey="Poto Nik, M" uniqKey="Poto Nik M">M Potočnik</name></author><author><name sortKey="Seme, K" uniqKey="Seme K">K Seme</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nobre, Rj" uniqKey="Nobre R">RJ Nobre</name></author><author><name sortKey="Herraez Hernandez, E" uniqKey="Herraez Hernandez E">E Herráez-Hernández</name></author><author><name sortKey="Fei, Jw" uniqKey="Fei J">JW Fei</name></author><author><name sortKey="Langbein, L" uniqKey="Langbein L">L Langbein</name></author><author><name sortKey="Kaden, S" uniqKey="Kaden S">S Kaden</name></author><author><name sortKey="Grone, Hj" uniqKey="Grone H">HJ Gröne</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li><li>Slovénie</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="Slovénie"><noRegion><name sortKey="Ostrbenk, Anja" sort="Ostrbenk, Anja" uniqKey="Ostrbenk A" first="Anja" last="Oštrbenk">Anja Oštrbenk</name></noRegion><name sortKey="Hosnjak, Lea" sort="Hosnjak, Lea" uniqKey="Hosnjak L" first="Lea" last="Hošnjak">Lea Hošnjak</name><name sortKey="Kocjan, Bostjan J" sort="Kocjan, Bostjan J" uniqKey="Kocjan B" first="Boštjan J." last="Kocjan">Boštjan J. Kocjan</name><name sortKey="Poljak, Mario" sort="Poljak, Mario" uniqKey="Poljak M" first="Mario" last="Poljak">Mario Poljak</name><name sortKey="Sterbenc, Anja" sort="Sterbenc, Anja" uniqKey="Sterbenc A" first="Anja" last="Šterbenc">Anja Šterbenc</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Li, Jingjing" sort="Li, Jingjing" uniqKey="Li J" first="Jingjing" last="Li">Jingjing Li</name></noRegion><name sortKey="Deng, Qiuju" sort="Deng, Qiuju" uniqKey="Deng Q" first="Qiuju" last="Deng">Qiuju Deng</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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