MetPetDB: A database for metamorphic geochemistry
Identifieur interne : 000680 ( Istex/Corpus ); précédent : 000679; suivant : 000681MetPetDB: A database for metamorphic geochemistry
Auteurs : Frank S. Spear ; Benjamin Hallett ; Joseph M. Pyle ; Sibel Adal ; Boleslaw K. Szymanski ; Anthony Waters ; Zak Linder ; Shawn O. Pearce ; Matthew Fyffe ; Dennis Goldfarb ; Nickolas Glickenhouse ; Heather BulettiSource :
- Geochemistry, Geophysics, Geosystems [ 1525-2027 ] ; 2009-12.
Abstract
We present a data model for the initial implementation of MetPetDB, a geochemical database specific to metamorphic rock samples. The database is designed around the concept of preservation of spatial relationships, at all scales, of chemical analyses and their textural setting. Objects in the database (samples) represent physical rock samples; each sample may contain one or more subsamples with associated geochemical and image data. Samples, subsamples, geochemical data, and images are described with attributes (some required, some optional); these attributes also serve as search delimiters. All data in the database are classified as published (i.e., archived or published data), public or private. Public and published data may be freely searched and downloaded. All private data is owned; permission to view, edit, download and otherwise manipulate private data may be granted only by the data owner; all such editing operations are recorded by the database to create a data version log. The sharing of data permissions among a group of collaborators researching a common sample is done by the sample owner through the project manager. User interaction with MetPetDB is hosted by a web‐based platform based upon the Java servlet application programming interface, with the PostgreSQL relational database. The database web portal includes modules that allow the user to interact with the database: registered users may save and download public and published data, upload private data, create projects, and assign permission levels to project collaborators. An Image Viewer module provides for spatial integration of image and geochemical data. A toolkit consisting of plotting and geochemical calculation software for data analysis and a mobile application for viewing the public and published data is being developed. Future issues to address include population of the database, integration with other geochemical databases, development of the analysis toolkit, creation of data models for derivative data, and building a community‐wide user base. It is believed that this and other geochemical databases will enable more productive collaborations, generate more efficient research efforts, and foster new developments in basic research in the field of solid earth geochemistry.
Url:
DOI: 10.1029/2009GC002766
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Geophys. Geosyst.</title><idno type="ISSN">1525-2027</idno><idno type="eISSN">1525-2027</idno><imprint><publisher>Blackwell Publishing Ltd</publisher><date type="published" when="2009-12">2009-12</date><biblScope unit="volume">10</biblScope><biblScope unit="issue">12</biblScope><biblScope unit="page" from="/">n/a</biblScope><biblScope unit="page" to="/">n/a</biblScope></imprint><idno type="ISSN">1525-2027</idno></series><idno type="istex">BFDA405243F27BB0D4EE2A81A95112D3C72C5FD4</idno><idno type="DOI">10.1029/2009GC002766</idno><idno type="ArticleID">2009GC002766</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">1525-2027</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract">We present a data model for the initial implementation of MetPetDB, a geochemical database specific to metamorphic rock samples. The database is designed around the concept of preservation of spatial relationships, at all scales, of chemical analyses and their textural setting. Objects in the database (samples) represent physical rock samples; each sample may contain one or more subsamples with associated geochemical and image data. Samples, subsamples, geochemical data, and images are described with attributes (some required, some optional); these attributes also serve as search delimiters. All data in the database are classified as published (i.e., archived or published data), public or private. Public and published data may be freely searched and downloaded. All private data is owned; permission to view, edit, download and otherwise manipulate private data may be granted only by the data owner; all such editing operations are recorded by the database to create a data version log. The sharing of data permissions among a group of collaborators researching a common sample is done by the sample owner through the project manager. User interaction with MetPetDB is hosted by a web‐based platform based upon the Java servlet application programming interface, with the PostgreSQL relational database. The database web portal includes modules that allow the user to interact with the database: registered users may save and download public and published data, upload private data, create projects, and assign permission levels to project collaborators. An Image Viewer module provides for spatial integration of image and geochemical data. A toolkit consisting of plotting and geochemical calculation software for data analysis and a mobile application for viewing the public and published data is being developed. Future issues to address include population of the database, integration with other geochemical databases, development of the analysis toolkit, creation of data models for derivative data, and building a community‐wide user base. It is believed that this and other geochemical databases will enable more productive collaborations, generate more efficient research efforts, and foster new developments in basic research in the field of solid earth geochemistry.</div></front></TEI><istex><corpusName>wiley</corpusName><author><json:item><name>Frank S. 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The database is designed around the concept of preservation of spatial relationships, at all scales, of chemical analyses and their textural setting. Objects in the database (samples) represent physical rock samples; each sample may contain one or more subsamples with associated geochemical and image data. Samples, subsamples, geochemical data, and images are described with attributes (some required, some optional); these attributes also serve as search delimiters. All data in the database are classified as published (i.e., archived or published data), public or private. Public and published data may be freely searched and downloaded. All private data is owned; permission to view, edit, download and otherwise manipulate private data may be granted only by the data owner; all such editing operations are recorded by the database to create a data version log. The sharing of data permissions among a group of collaborators researching a common sample is done by the sample owner through the project manager. User interaction with MetPetDB is hosted by a web‐based platform based upon the Java servlet application programming interface, with the PostgreSQL relational database. The database web portal includes modules that allow the user to interact with the database: registered users may save and download public and published data, upload private data, create projects, and assign permission levels to project collaborators. An Image Viewer module provides for spatial integration of image and geochemical data. A toolkit consisting of plotting and geochemical calculation software for data analysis and a mobile application for viewing the public and published data is being developed. Future issues to address include population of the database, integration with other geochemical databases, development of the analysis toolkit, creation of data models for derivative data, and building a community‐wide user base. It is believed that this and other geochemical databases will enable more productive collaborations, generate more efficient research efforts, and foster new developments in basic research in the field of solid earth geochemistry.</abstract><qualityIndicators><score>8.5</score><pdfVersion>1.4</pdfVersion><pdfPageSize>612 x 792 pts (letter)</pdfPageSize><refBibsNative>true</refBibsNative><keywordCount>4</keywordCount><abstractCharCount>2288</abstractCharCount><pdfWordCount>6296</pdfWordCount><pdfCharCount>40832</pdfCharCount><pdfPageCount>15</pdfPageCount><abstractWordCount>338</abstractWordCount></qualityIndicators><title>MetPetDB: A database for metamorphic 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type="first">Joseph M.</forename><surname>Pyle</surname></persName><affiliation>Department of Earth and Environmental Sciences, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-4"><persName><forename type="first">Sibel</forename><surname>Adalı</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-5"><persName><forename type="first">Boleslaw K.</forename><surname>Szymanski</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-6"><persName><forename type="first">Anthony</forename><surname>Waters</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-7"><persName><forename type="first">Zak</forename><surname>Linder</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-8"><persName><forename type="first">Shawn O.</forename><surname>Pearce</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-9"><persName><forename type="first">Matthew</forename><surname>Fyffe</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-10"><persName><forename type="first">Dennis</forename><surname>Goldfarb</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-11"><persName><forename type="first">Nickolas</forename><surname>Glickenhouse</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author><author xml:id="author-12"><persName><forename type="first">Heather</forename><surname>Buletti</surname></persName><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation></author></analytic><monogr><title level="j">Geochemistry, Geophysics, Geosystems</title><title level="j" type="abbrev">Geochem. Geophys. Geosyst.</title><idno type="pISSN">1525-2027</idno><idno type="eISSN">1525-2027</idno><idno type="DOI">10.1002/(ISSN)1525-2027</idno><imprint><publisher>Blackwell Publishing Ltd</publisher><date type="published" when="2009-12"></date><biblScope unit="volume">10</biblScope><biblScope unit="issue">12</biblScope><biblScope unit="page" from="/">n/a</biblScope><biblScope unit="page" to="/">n/a</biblScope></imprint></monogr><idno type="istex">BFDA405243F27BB0D4EE2A81A95112D3C72C5FD4</idno><idno type="DOI">10.1029/2009GC002766</idno><idno type="ArticleID">2009GC002766</idno></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>2009</date></creation><langUsage><language ident="en">en</language></langUsage><abstract><p>We present a data model for the initial implementation of MetPetDB, a geochemical database specific to metamorphic rock samples. The database is designed around the concept of preservation of spatial relationships, at all scales, of chemical analyses and their textural setting. Objects in the database (samples) represent physical rock samples; each sample may contain one or more subsamples with associated geochemical and image data. Samples, subsamples, geochemical data, and images are described with attributes (some required, some optional); these attributes also serve as search delimiters. All data in the database are classified as published (i.e., archived or published data), public or private. Public and published data may be freely searched and downloaded. All private data is owned; permission to view, edit, download and otherwise manipulate private data may be granted only by the data owner; all such editing operations are recorded by the database to create a data version log. The sharing of data permissions among a group of collaborators researching a common sample is done by the sample owner through the project manager. User interaction with MetPetDB is hosted by a web‐based platform based upon the Java servlet application programming interface, with the PostgreSQL relational database. The database web portal includes modules that allow the user to interact with the database: registered users may save and download public and published data, upload private data, create projects, and assign permission levels to project collaborators. An Image Viewer module provides for spatial integration of image and geochemical data. A toolkit consisting of plotting and geochemical calculation software for data analysis and a mobile application for viewing the public and published data is being developed. Future issues to address include population of the database, integration with other geochemical databases, development of the analysis toolkit, creation of data models for derivative data, and building a community‐wide user base. It is believed that this and other geochemical databases will enable more productive collaborations, generate more efficient research efforts, and foster new developments in basic research in the field of solid earth geochemistry.</p></abstract><textClass><keywords scheme="keyword"><list><head>keywords</head><item><term>metamorphic petrology</term></item><item><term>database</term></item><item><term>geochemistry</term></item><item><term>geoinformatics</term></item></list></keywords></textClass><textClass><keywords scheme="Journal Subject"><list><head>index-terms</head><item><term>GEOCHEMISTRY</term></item><item><term>Field relationships</term></item><item><term>MINERALOGY AND PETROLOGY</term></item><item><term>Metamorphic petrology</term></item><item><term>Mineral occurrences and deposits</term></item><item><term>Field relationships</term></item><item><term>VOLCANOLOGY</term></item><item><term>Field relationships</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="2009-07-31">Received</change><change when="2009-10-12">Registration</change><change when="2009-12">Published</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><original>false</original><mimetype>text/plain</mimetype><extension>txt</extension><uri>https://api.istex.fr/document/BFDA405243F27BB0D4EE2A81A95112D3C72C5FD4/fulltext/txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Wiley, elements deleted: body"><istex:xmlDeclaration>version="1.0" encoding="UTF-8" standalone="yes"</istex:xmlDeclaration><istex:document><component type="serialArticle" version="2.0" xml:lang="en" xml:id="ggge1639"><header><publicationMeta level="product"><doi>10.1002/(ISSN)1525-2027</doi><issn type="print">1525-2027</issn><issn type="electronic">1525-2027</issn><idGroup><id type="product" value="GGGE"></id><id type="coden" value="GGGGFR"></id></idGroup><titleGroup><title type="main" xml:lang="en" sort="GEOCHEMISTRY, GEOPHYSICS, GEOSYSTEMS">Geochemistry, Geophysics, Geosystems</title><title type="short">Geochem. Geophys. Geosyst.</title></titleGroup></publicationMeta><publicationMeta level="part" position="120"><doi>10.1002/ggge.v10.12</doi><numberingGroup><numbering type="journalVolume" number="10">10</numbering><numbering type="journalIssue">12</numbering></numberingGroup><coverDate startDate="2009-12">December 2009</coverDate></publicationMeta><publicationMeta level="unit" position="170" type="article" status="forIssue"><doi>10.1029/2009GC002766</doi><idGroup><id type="editorialOffice" value="2009GC002766"></id><id type="society" value="Q12005"></id><id type="unit" value="GGGE1639"></id></idGroup><countGroup><count type="pageTotal" number="15"></count></countGroup><copyright ownership="thirdParty">Copyright 2009 by the American Geophysical Union.</copyright><eventGroup><event type="manuscriptReceived" date="2009-07-31"></event><event type="manuscriptRevised" date="2009-10-05"></event><event type="manuscriptAccepted" date="2009-10-12"></event><event type="firstOnline" date="2009-12-04"></event><event type="publishedOnlineFinalForm" date="2009-12-04"></event><event type="xmlConverted" agent="SPi Global Converter:AGUv3.44_TO_WileyML3Gv1.0.3 version:1.0; AGU2WileyML3G Final Clean Up v1.0; WileyML 3G Packaging Tool v1.0" date="2013-01-02"></event><event type="xmlConverted" agent="Converter:WILEY_ML3G_TO_WILEY_ML3GV2 version:3.8.8" date="2014-01-26"></event><event type="xmlConverted" agent="Converter:WML3G_To_WML3G version:4.1.7 mode:FullText,remove_FC" date="2014-10-16"></event></eventGroup><numberingGroup><numbering type="pageFirst">n/a</numbering><numbering type="pageLast">n/a</numbering></numberingGroup><subjectInfo><subject role="crossTerm" href="http://psi.agu.org/taxonomy5/1000">GEOCHEMISTRY</subject><subjectInfo><subject role="crossTerm" href="http://psi.agu.org/taxonomy5/1090">Field relationships</subject></subjectInfo><subject href="http://psi.agu.org/taxonomy5/3600">MINERALOGY AND PETROLOGY</subject><subjectInfo><subject href="http://psi.agu.org/taxonomy5/3660">Metamorphic petrology</subject><subject href="http://psi.agu.org/taxonomy5/3665">Mineral occurrences and deposits</subject><subject href="http://psi.agu.org/taxonomy5/3690">Field relationships</subject></subjectInfo><subject role="crossTerm" href="http://psi.agu.org/taxonomy5/8400">VOLCANOLOGY</subject><subjectInfo><subject role="crossTerm" href="http://psi.agu.org/taxonomy5/8486">Field relationships</subject></subjectInfo></subjectInfo><selfCitationGroup><citation xml:id="ggge1639-cit-0000" type="self"><author><familyName>Spear</familyName>, <givenNames>F. S.</givenNames></author>, et al. (<pubYear year="2009">2009</pubYear>), <articleTitle>MetPetDB: A database for metamorphic geochemistry</articleTitle>, <journalTitle>Geochem. Geophys. Geosyst.</journalTitle>, <vol>10</vol>, Q12005, doi:<accessionId ref="info:doi/10.1029/2009GC002766">10.1029/2009GC002766</accessionId>.</citation></selfCitationGroup><linkGroup><link type="toTypesetVersion" href="file:GGGE.GGGE1639.pdf"></link></linkGroup></publicationMeta><contentMeta><countGroup><count type="wordTotal" number="7166"></count><count type="figureTotal" number="6"></count><count type="tableTotal" number="7"></count></countGroup><titleGroup><title type="main">MetPetDB: A database for metamorphic geochemistry</title><title type="short">METPETDB—A DATABASE FOR METAMORPHIC ROCKS</title><title type="shortAuthors">Spear <i>et al</i>.</title></titleGroup><creators><creator creatorRole="author" xml:id="ggge1639-cr-0001" affiliationRef="#ggge1639-aff-0001"><personName><givenNames>Frank S.</givenNames> <familyName>Spear</familyName></personName><contactDetails><email normalForm="spearf@rpi.edu">spearf@rpi.edu</email></contactDetails></creator><creator creatorRole="author" xml:id="ggge1639-cr-0002" affiliationRef="#ggge1639-aff-0001"><personName><givenNames>Benjamin</givenNames> <familyName>Hallett</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0003" affiliationRef="#ggge1639-aff-0001"><personName><givenNames>Joseph M.</givenNames> <familyName>Pyle</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0004" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Sibel</givenNames> <familyName>Adalı</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0005" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Boleslaw K.</givenNames> <familyName>Szymanski</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0006" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Anthony</givenNames> <familyName>Waters</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0007" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Zak</givenNames> <familyName>Linder</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0008" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Shawn O.</givenNames> <familyName>Pearce</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0009" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Matthew</givenNames> <familyName>Fyffe</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0010" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Dennis</givenNames> <familyName>Goldfarb</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0011" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Nickolas</givenNames> <familyName>Glickenhouse</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1639-cr-0012" affiliationRef="#ggge1639-aff-0002"><personName><givenNames>Heather</givenNames> <familyName>Buletti</familyName></personName></creator></creators><affiliationGroup><affiliation countryCode="US" type="organization" xml:id="ggge1639-aff-0001"><orgDiv>Department of Earth and Environmental Sciences</orgDiv><orgName>Rensselaer Polytechnic Institute</orgName><address><city>Troy</city><countryPart>New York</countryPart><postCode>12180</postCode><country>USA</country></address></affiliation><affiliation countryCode="US" type="organization" xml:id="ggge1639-aff-0002"><orgDiv>Department of Computer Science</orgDiv><orgName>Rensselaer Polytechnic Institute</orgName><address><city>Troy</city><countryPart>New York</countryPart><postCode>12180</postCode><country>USA</country></address></affiliation></affiliationGroup><keywordGroup type="author"><keyword xml:id="ggge1639-kwd-0001">metamorphic petrology</keyword><keyword xml:id="ggge1639-kwd-0002">database</keyword><keyword xml:id="ggge1639-kwd-0003">geochemistry</keyword><keyword xml:id="ggge1639-kwd-0004">geoinformatics</keyword></keywordGroup><abstractGroup><abstract type="main"><p xml:id="ggge1639-para-0001">We present a data model for the initial implementation of MetPetDB, a geochemical database specific to metamorphic rock samples. The database is designed around the concept of preservation of spatial relationships, at all scales, of chemical analyses and their textural setting. Objects in the database (samples) represent physical rock samples; each sample may contain one or more subsamples with associated geochemical and image data. Samples, subsamples, geochemical data, and images are described with attributes (some required, some optional); these attributes also serve as search delimiters. All data in the database are classified as published (i.e., archived or published data), public or private. Public and published data may be freely searched and downloaded. All private data is owned; permission to view, edit, download and otherwise manipulate private data may be granted only by the data owner; all such editing operations are recorded by the database to create a data version log. The sharing of data permissions among a group of collaborators researching a common sample is done by the sample owner through the project manager. User interaction with MetPetDB is hosted by a web‐based platform based upon the Java servlet application programming interface, with the PostgreSQL relational database. The database web portal includes modules that allow the user to interact with the database: registered users may save and download public and published data, upload private data, create projects, and assign permission levels to project collaborators. An Image Viewer module provides for spatial integration of image and geochemical data. A toolkit consisting of plotting and geochemical calculation software for data analysis and a mobile application for viewing the public and published data is being developed. Future issues to address include population of the database, integration with other geochemical databases, development of the analysis toolkit, creation of data models for derivative data, and building a community‐wide user base. It is believed that this and other geochemical databases will enable more productive collaborations, generate more efficient research efforts, and foster new developments in basic research in the field of solid earth geochemistry.</p></abstract></abstractGroup></contentMeta></header></component></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>MetPetDB: A database for metamorphic geochemistry</title></titleInfo><titleInfo type="abbreviated" lang="en"><title>METPETDB—A DATABASE FOR METAMORPHIC ROCKS</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>MetPetDB: A database for metamorphic geochemistry</title></titleInfo><name type="personal"><namePart type="given">Frank S.</namePart><namePart type="family">Spear</namePart><affiliation>Department of Earth and Environmental Sciences, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><affiliation>E-mail: spearf@rpi.edu</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Benjamin</namePart><namePart type="family">Hallett</namePart><affiliation>Department of Earth and Environmental Sciences, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Joseph M.</namePart><namePart type="family">Pyle</namePart><affiliation>Department of Earth and Environmental Sciences, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Sibel</namePart><namePart type="family">Adalı</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Boleslaw K.</namePart><namePart type="family">Szymanski</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Anthony</namePart><namePart type="family">Waters</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Zak</namePart><namePart type="family">Linder</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Shawn O.</namePart><namePart type="family">Pearce</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Matthew</namePart><namePart type="family">Fyffe</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Dennis</namePart><namePart type="family">Goldfarb</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Nickolas</namePart><namePart type="family">Glickenhouse</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Heather</namePart><namePart type="family">Buletti</namePart><affiliation>Department of Computer Science, Rensselaer Polytechnic Institute, New York, 12180, Troy, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="article" displayLabel="article"></genre><originInfo><publisher>Blackwell Publishing Ltd</publisher><dateIssued encoding="w3cdtf">2009-12</dateIssued><dateCaptured encoding="w3cdtf">2009-07-31</dateCaptured><dateValid encoding="w3cdtf">2009-10-12</dateValid><edition>Spear, F. S., et al. (2009), MetPetDB: A database for metamorphic geochemistry, Geochem. Geophys. Geosyst., 10, Q12005, doi:10.1029/2009GC002766.</edition><copyrightDate encoding="w3cdtf">2009</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType><extent unit="figures">6</extent><extent unit="tables">7</extent><extent unit="words">7166</extent></physicalDescription><abstract>We present a data model for the initial implementation of MetPetDB, a geochemical database specific to metamorphic rock samples. The database is designed around the concept of preservation of spatial relationships, at all scales, of chemical analyses and their textural setting. Objects in the database (samples) represent physical rock samples; each sample may contain one or more subsamples with associated geochemical and image data. Samples, subsamples, geochemical data, and images are described with attributes (some required, some optional); these attributes also serve as search delimiters. All data in the database are classified as published (i.e., archived or published data), public or private. Public and published data may be freely searched and downloaded. All private data is owned; permission to view, edit, download and otherwise manipulate private data may be granted only by the data owner; all such editing operations are recorded by the database to create a data version log. The sharing of data permissions among a group of collaborators researching a common sample is done by the sample owner through the project manager. User interaction with MetPetDB is hosted by a web‐based platform based upon the Java servlet application programming interface, with the PostgreSQL relational database. The database web portal includes modules that allow the user to interact with the database: registered users may save and download public and published data, upload private data, create projects, and assign permission levels to project collaborators. An Image Viewer module provides for spatial integration of image and geochemical data. A toolkit consisting of plotting and geochemical calculation software for data analysis and a mobile application for viewing the public and published data is being developed. Future issues to address include population of the database, integration with other geochemical databases, development of the analysis toolkit, creation of data models for derivative data, and building a community‐wide user base. It is believed that this and other geochemical databases will enable more productive collaborations, generate more efficient research efforts, and foster new developments in basic research in the field of solid earth geochemistry.</abstract><subject><genre>keywords</genre><topic>metamorphic petrology</topic><topic>database</topic><topic>geochemistry</topic><topic>geoinformatics</topic></subject><relatedItem type="host"><titleInfo><title>Geochemistry, Geophysics, Geosystems</title></titleInfo><titleInfo type="abbreviated"><title>Geochem. Geophys. Geosyst.</title></titleInfo><genre type="journal">journal</genre><subject><genre>index-terms</genre><topic authorityURI="http://psi.agu.org/taxonomy5/1000">GEOCHEMISTRY</topic><topic authorityURI="http://psi.agu.org/taxonomy5/1090">Field relationships</topic><topic authorityURI="http://psi.agu.org/taxonomy5/3600">MINERALOGY AND PETROLOGY</topic><topic authorityURI="http://psi.agu.org/taxonomy5/3660">Metamorphic petrology</topic><topic authorityURI="http://psi.agu.org/taxonomy5/3665">Mineral occurrences and deposits</topic><topic authorityURI="http://psi.agu.org/taxonomy5/3690">Field relationships</topic><topic authorityURI="http://psi.agu.org/taxonomy5/8400">VOLCANOLOGY</topic><topic authorityURI="http://psi.agu.org/taxonomy5/8486">Field relationships</topic></subject><identifier type="ISSN">1525-2027</identifier><identifier type="eISSN">1525-2027</identifier><identifier type="DOI">10.1002/(ISSN)1525-2027</identifier><identifier type="CODEN">GGGGFR</identifier><identifier type="PublisherID">GGGE</identifier><part><date>2009</date><detail type="volume"><caption>vol.</caption><number>10</number></detail><detail type="issue"><caption>no.</caption><number>12</number></detail><extent unit="pages"><start>n/a</start><end>n/a</end><total>15</total></extent></part></relatedItem><identifier type="istex">BFDA405243F27BB0D4EE2A81A95112D3C72C5FD4</identifier><identifier type="DOI">10.1029/2009GC002766</identifier><identifier type="ArticleID">2009GC002766</identifier><accessCondition type="use and reproduction" contentType="copyright">Copyright 2009 by the American Geophysical Union.</accessCondition><recordInfo><recordContentSource>WILEY</recordContentSource></recordInfo></mods></metadata><enrichments><json:item><type>multicat</type><uri>https://api.istex.fr/document/BFDA405243F27BB0D4EE2A81A95112D3C72C5FD4/enrichments/multicat</uri></json:item></enrichments><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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