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Standardization initiatives in the (eco)toxicogenomics domain: a review

Identifieur interne : 000599 ( Istex/Corpus ); précédent : 000598; suivant : 000600

Standardization initiatives in the (eco)toxicogenomics domain: a review

Auteurs : Susanna Assunta Sansone ; Norman Morrison ; Philippe Rocca-Serra ; Jennifer Fostel

Source :

RBID : ISTEX:54E450C55FF52014EE9B506FAF9A81A7AA7B79DD

English descriptors

Abstract

The purpose of this document is to provide readers with a resource of different ongoing standardization efforts within the ‘omics’ (genomic, proteomics, metabolomics) and related communities, with particular focus on toxicological and environmental applications. The review includes initiatives within the research community as well as in the regulatory arena. It addresses data management issues (format and reporting structures for the exchange of information) and database interoperability, highlighting key objectives, target audience and participants. A considerable amount of work still needs to be done and, ideally, collaboration should be optimized and duplication and incompatibility should be avoided where possible. The consequence of failing to deliver data standards is an escalation in the burden and cost of data management tasks. Copyright © 2005 John Wiley & Sons, Ltd.

Url:
DOI: 10.1002/cfg.447

Links to Exploration step

ISTEX:54E450C55FF52014EE9B506FAF9A81A7AA7B79DD

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</titleInfo>
<titleInfo type="alternative" contentType="CDATA" lang="en">
<title>Standardization initiatives in the (eco)toxicogenomics domain: a review</title>
</titleInfo>
<name type="personal">
<namePart type="given">Susanna Assunta</namePart>
<namePart type="family">Sansone</namePart>
<affiliation>EMBL‐EBI, The European Bioinformatics Institute, Cambridge CB10 1SD, UK</affiliation>
<description>Correspondence: EMBL‐EBI, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK.</description>
<role>
<roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal">
<namePart type="given">Norman</namePart>
<namePart type="family">Morrison</namePart>
<affiliation>The University of Manchester, Kilburn Building, School of Computer Science, Oxford Road, Manchester M13 9PL, UK</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal">
<namePart type="given">Philippe</namePart>
<namePart type="family">Rocca‐Serra</namePart>
<affiliation>EMBL‐EBI, The European Bioinformatics Institute, Cambridge CB10 1SD, UK</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal">
<namePart type="given">Jennifer</namePart>
<namePart type="family">Fostel</namePart>
<affiliation>National Institute of Environmental Health Sciences, National Center for Toxicogenomics. Research Triangle Park, NC 27709, USA</affiliation>
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<roleTerm type="text">author</roleTerm>
</role>
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<publisher>John Wiley & Sons, Ltd.</publisher>
<place>
<placeTerm type="text">Chichester, UK</placeTerm>
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<dateIssued encoding="w3cdtf">2004-12</dateIssued>
<dateValid encoding="w3cdtf">2004-11-26</dateValid>
<copyrightDate encoding="w3cdtf">2004</copyrightDate>
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<languageTerm type="code" authority="iso639-2b">eng</languageTerm>
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<abstract lang="en">The purpose of this document is to provide readers with a resource of different ongoing standardization efforts within the ‘omics’ (genomic, proteomics, metabolomics) and related communities, with particular focus on toxicological and environmental applications. The review includes initiatives within the research community as well as in the regulatory arena. It addresses data management issues (format and reporting structures for the exchange of information) and database interoperability, highlighting key objectives, target audience and participants. A considerable amount of work still needs to be done and, ideally, collaboration should be optimized and duplication and incompatibility should be avoided where possible. The consequence of failing to deliver data standards is an escalation in the burden and cost of data management tasks. Copyright © 2005 John Wiley & Sons, Ltd.</abstract>
<note type="funding">ILSI‐HESI Genomics Committee</note>
<note type="funding">NERC</note>
<note type="funding">European Commission</note>
<note type="funding">NIEHS NCT</note>
<subject lang="en">
<genre>keywords</genre>
<topic>toxicogenomics</topic>
<topic>ecotoxicogenomics</topic>
<topic>toxicology</topic>
<topic>environment</topic>
<topic>functional genomics</topic>
<topic>standards</topic>
<topic>database</topic>
</subject>
<relatedItem type="host">
<titleInfo>
<title>Comparative and Functional Genomics</title>
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<titleInfo type="abbreviated">
<title>Comp Funct Genom</title>
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<genre type="journal">journal</genre>
<subject>
<genre>article-category</genre>
<topic>Conference Paper</topic>
</subject>
<identifier type="ISSN">1531-6912</identifier>
<identifier type="eISSN">1532-6268</identifier>
<identifier type="DOI">10.1002/(ISSN)1532-6268</identifier>
<identifier type="PublisherID">CFG</identifier>
<part>
<date>2004</date>
<detail type="volume">
<caption>vol.</caption>
<number>5</number>
</detail>
<detail type="issue">
<caption>no.</caption>
<number>8</number>
</detail>
<extent unit="pages">
<start>633</start>
<end>641</end>
<total>9</total>
</extent>
</part>
</relatedItem>
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<titleInfo>
<title>Yeast</title>
</titleInfo>
<identifier type="ISSN">0749-503X</identifier>
<identifier type="ISSN">1097-0061</identifier>
<part>
<date point="end">2000</date>
<detail type="volume">
<caption>last vol.</caption>
<number>17</number>
</detail>
<detail type="issue">
<caption>last no.</caption>
<number>4</number>
</detail>
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<identifier type="istex">54E450C55FF52014EE9B506FAF9A81A7AA7B79DD</identifier>
<identifier type="DOI">10.1002/cfg.447</identifier>
<identifier type="ArticleID">CFG447</identifier>
<accessCondition type="use and reproduction" contentType="copyright">Copyright © 2005 John Wiley & Sons, Ltd.</accessCondition>
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