An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI)
Identifieur interne : 000385 ( Istex/Corpus ); précédent : 000384; suivant : 000386An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI)
Auteurs : M. Salman ; D. Malony ; J. SottileSource :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2009.
Abstract
Abstract: In scientific domains where discovery is driven by simulation modeling there are found common methodologies and procedures applied for scientific investigation. ODESSI (Open Domain-extensible Environment for Simulation-based Scientific Investigation) is an environment to facilitate the representation and automatic conduction of scientific studies by capturing common methods for experimentation, analysis, and evaluation used in simulation science. Specific methods ODESSI will support include parameter studies, optimization, uncertainty quantification, and sensitivity analysis. By making these methods accessible in a programmable framework, ODESSI can be used to capture and run domain-specific investigations. ODESSI is demonstrated for a problem in the neuroscience domain involving computational modeling of human head electromagnetics for conductivity analysis and source localization.
Url:
DOI: 10.1007/978-3-642-01970-8_3
Links to Exploration step
ISTEX:1BADF6747DBC959225FE6C579A040D2A301345CALe document en format XML
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Computer and Information Science, University of Oregon, OR 97403, Eugene, USA</mods:affiliation></affiliation><affiliation><mods:affiliation>E-mail: adnan@cs.uoregon.edu</mods:affiliation></affiliation></author><author><name sortKey="Malony, D" sort="Malony, D" uniqKey="Malony D" first="D." last="Malony">D. Malony</name><affiliation><mods:affiliation>Dept. Computer and Information Science, University of Oregon, OR 97403, Eugene, USA</mods:affiliation></affiliation><affiliation><mods:affiliation>E-mail: malony@cs.uoregon.edu</mods:affiliation></affiliation></author><author><name sortKey="Sottile, J" sort="Sottile, J" uniqKey="Sottile J" first="J." last="Sottile">J. Sottile</name><affiliation><mods:affiliation>Dept. 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ODESSI (Open Domain-extensible Environment for Simulation-based Scientific Investigation) is an environment to facilitate the representation and automatic conduction of scientific studies by capturing common methods for experimentation, analysis, and evaluation used in simulation science. Specific methods ODESSI will support include parameter studies, optimization, uncertainty quantification, and sensitivity analysis. By making these methods accessible in a programmable framework, ODESSI can be used to capture and run domain-specific investigations. ODESSI is demonstrated for a problem in the neuroscience domain involving computational modeling of human head electromagnetics for conductivity analysis and source localization.</div></front></TEI><istex><corpusName>springer</corpusName><author><json:item><name>Adnan M. Salman</name><affiliations><json:string>Dept. 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ODESSI (Open Domain-extensible Environment for Simulation-based Scientific Investigation) is an environment to facilitate the representation and automatic conduction of scientific studies by capturing common methods for experimentation, analysis, and evaluation used in simulation science. Specific methods ODESSI will support include parameter studies, optimization, uncertainty quantification, and sensitivity analysis. By making these methods accessible in a programmable framework, ODESSI can be used to capture and run domain-specific investigations. ODESSI is demonstrated for a problem in the neuroscience domain involving computational modeling of human head electromagnetics for conductivity analysis and source localization.</p></abstract><textClass><keywords scheme="Book-Subject-Collection"><list><label>SUCO11645</label><item><term>Computer Science</term></item></list></keywords></textClass><textClass><keywords scheme="Book-Subject-Group"><list><label>I</label><label>I16005</label><label>I14002</label><label>I1701X</label><label>I24032</label><label>I21025</label><label>I22005</label><item><term>Computer Science</term></item><item><term>Theory of Computation</term></item><item><term>Software Engineering/Programming and Operating Systems</term></item><item><term>Numeric Computing</term></item><item><term>Computers and Education</term></item><item><term>Simulation and Modeling</term></item><item><term>Computer Imaging, Vision, Pattern Recognition and 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University</OrgName><OrgAddress><City>Pittsburgh</City><State>PA</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff3"><OrgName>University of Surrey</OrgName><OrgAddress><City>Guildford</City><Country>UK</Country></OrgAddress></Affiliation><Affiliation ID="Aff4"><OrgName>Cornell University</OrgName><OrgAddress><City>Ithaca</City><State>NY</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff5"><OrgName>ETH Zurich</OrgName><OrgAddress><City>Zurich</City><Country>Switzerland</Country></OrgAddress></Affiliation><Affiliation ID="Aff6"><OrgName>Stanford University</OrgName><OrgAddress><City>Stanford</City><State>CA</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff7"><OrgName>Weizmann Institute of Science</OrgName><OrgAddress><City>Rehovot</City><Country>Israel</Country></OrgAddress></Affiliation><Affiliation ID="Aff8"><OrgName>University of Bern</OrgName><OrgAddress><City>Bern</City><Country>Switzerland</Country></OrgAddress></Affiliation><Affiliation ID="Aff9"><OrgName>Indian Institute of Technology</OrgName><OrgAddress><City>Madras</City><Country>India</Country></OrgAddress></Affiliation><Affiliation ID="Aff10"><OrgName>University of Dortmund</OrgName><OrgAddress><City>Dortmund</City><Country>Germany</Country></OrgAddress></Affiliation><Affiliation ID="Aff11"><OrgName>Massachusetts Institute of Technology</OrgName><OrgAddress><State>MA</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff12"><OrgName>University of California</OrgName><OrgAddress><City>Los Angeles</City><State>CA</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff13"><OrgName>University of California</OrgName><OrgAddress><City>Berkeley</City><State>CA</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff14"><OrgName>Rice University</OrgName><OrgAddress><City>Houston</City><State>TX</State><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff15"><OrgName>Max-Planck Institute of Computer Science</OrgName><OrgAddress><City>Saarbrücken</City><Country>Germany</Country></OrgAddress></Affiliation></EditorGroup></SeriesHeader><Book Language="En"><BookInfo BookProductType="Proceedings" ContainsESM="No" Language="En" MediaType="eBook" NumberingStyle="Unnumbered" OutputMedium="All" TocLevels="0"><BookID>978-3-642-01970-8</BookID><BookTitle>Computational Science – ICCS 2009</BookTitle><BookSubTitle>9th International Conference Baton Rouge, LA, USA, May 25-27, 2009 Proceedings, Part I</BookSubTitle><BookVolumeNumber>5544</BookVolumeNumber><BookSequenceNumber>5544</BookSequenceNumber><BookDOI>10.1007/978-3-642-01970-8</BookDOI><BookTitleID>188802</BookTitleID><BookPrintISBN>978-3-642-01969-2</BookPrintISBN><BookElectronicISBN>978-3-642-01970-8</BookElectronicISBN><BookChapterCount>102</BookChapterCount><BookCopyright><CopyrightHolderName>Springer-Verlag Berlin Heidelberg</CopyrightHolderName><CopyrightYear>2009</CopyrightYear></BookCopyright><BookSubjectGroup><BookSubject Code="I" Type="Primary">Computer Science</BookSubject><BookSubject Code="I16005" Priority="1" Type="Secondary">Theory of Computation</BookSubject><BookSubject Code="I14002" Priority="2" Type="Secondary">Software Engineering/Programming and Operating Systems</BookSubject><BookSubject Code="I1701X" Priority="3" Type="Secondary">Numeric Computing</BookSubject><BookSubject Code="I24032" Priority="4" Type="Secondary">Computers and Education</BookSubject><BookSubject Code="I21025" Priority="5" Type="Secondary">Simulation and Modeling</BookSubject><BookSubject Code="I22005" Priority="6" Type="Secondary">Computer Imaging, Vision, Pattern Recognition and Graphics</BookSubject><SubjectCollection Code="SUCO11645">Computer Science</SubjectCollection></BookSubjectGroup><BookContext><SeriesID>558</SeriesID></BookContext></BookInfo><BookHeader><EditorGroup><Editor AffiliationIDS="Aff16"><EditorName DisplayOrder="Western"><GivenName>Gabrielle</GivenName><FamilyName>Allen</FamilyName></EditorName><Contact><Email>gallen@cct.lsu.edu</Email></Contact></Editor><Editor AffiliationIDS="Aff17"><EditorName DisplayOrder="Western"><GivenName>Jarosław</GivenName><FamilyName>Nabrzyski</FamilyName></EditorName><Contact><Email>naber@man.poznan.pl</Email></Contact></Editor><Editor AffiliationIDS="Aff18"><EditorName DisplayOrder="Western"><GivenName>Edward</GivenName><FamilyName>Seidel</FamilyName></EditorName><Contact><Email>eseidel@cct.lsu.edu</Email></Contact></Editor><Editor AffiliationIDS="Aff19"><EditorName DisplayOrder="Western"><GivenName>Geert</GivenName><GivenName>Dick</GivenName><Particle>van</Particle><FamilyName>Albada</FamilyName></EditorName><Contact><Email>dick@science.uva.nl</Email></Contact></Editor><Editor AffiliationIDS="Aff20"><EditorName DisplayOrder="Western"><GivenName>Jack</GivenName><FamilyName>Dongarra</FamilyName></EditorName><Contact><Email>dongarra@eecs.utk.edu</Email></Contact></Editor><Editor AffiliationIDS="Aff21"><EditorName DisplayOrder="Western"><GivenName>Peter</GivenName><GivenName>M.</GivenName><GivenName>A.</GivenName><FamilyName>Sloot</FamilyName></EditorName><Contact><Email>sloot@science.uva.nl</Email></Contact></Editor><Affiliation ID="Aff16"><OrgDivision>Center for Computation & Technology</OrgDivision><OrgName>Louisiana State University</OrgName><OrgAddress><Street>216 Johnston Hall</Street><Postcode>LA 70803</Postcode><City>Baton Rouge</City><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff17"><OrgName>Poznań Supercomputing and Networking Center</OrgName><OrgAddress><City>Poznań</City><Country>Poland</Country></OrgAddress></Affiliation><Affiliation ID="Aff18"><OrgDivision>Center for Computation and Technology</OrgDivision><OrgName>Louisiana State University</OrgName><OrgAddress><Postcode>LA 70803</Postcode><City>Baton Rouge</City><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff19"><OrgDivision>Department of Mathematics and Computer Science</OrgDivision><OrgName>University of Amsterdam</OrgName><OrgAddress><Street>Kruislaan 403</Street><Postcode>1098 SJ</Postcode><City>Amsterdam</City><Country>The Netherlands</Country></OrgAddress></Affiliation><Affiliation ID="Aff20"><OrgDivision>Computer Science Department, Knoxville</OrgDivision><OrgName>University of Tennessee</OrgName><OrgAddress><Postcode>TN 37996-3450</Postcode><Country>USA</Country></OrgAddress></Affiliation><Affiliation ID="Aff21"><OrgDivision>Faculty of Sciences, Section of Computational Science</OrgDivision><OrgName>University of Amsterdam</OrgName><OrgAddress><Street>Kruislaan 403</Street><Postcode>1098 SJ</Postcode><City>Amsterdam</City><Country>The Netherlands</Country></OrgAddress></Affiliation></EditorGroup></BookHeader><Part ID="Part1"><PartInfo TocLevels="0"><PartID>1</PartID><PartSequenceNumber>1</PartSequenceNumber><PartTitle>e-Science Applications and Systems</PartTitle><PartChapterCount>15</PartChapterCount><PartContext><SeriesID>558</SeriesID><BookTitle>Computational Science – ICCS 2009</BookTitle></PartContext></PartInfo><Chapter ID="Chap3" Language="En"><ChapterInfo ChapterType="OriginalPaper" ContainsESM="No" NumberingStyle="Unnumbered" TocLevels="0"><ChapterID>3</ChapterID><ChapterDOI>10.1007/978-3-642-01970-8_3</ChapterDOI><ChapterSequenceNumber>3</ChapterSequenceNumber><ChapterTitle Language="En">An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI)</ChapterTitle><ChapterFirstPage>23</ChapterFirstPage><ChapterLastPage>32</ChapterLastPage><ChapterCopyright><CopyrightHolderName>Springer-Verlag Berlin Heidelberg</CopyrightHolderName><CopyrightYear>2009</CopyrightYear></ChapterCopyright><ChapterGrants Type="Regular"><MetadataGrant Grant="OpenAccess"></MetadataGrant><AbstractGrant Grant="OpenAccess"></AbstractGrant><BodyPDFGrant Grant="Restricted"></BodyPDFGrant><BodyHTMLGrant Grant="Restricted"></BodyHTMLGrant><BibliographyGrant Grant="Restricted"></BibliographyGrant><ESMGrant Grant="Restricted"></ESMGrant></ChapterGrants><ChapterContext><SeriesID>558</SeriesID><PartID>1</PartID><BookID>978-3-642-01970-8</BookID><BookTitle>Computational Science – ICCS 2009</BookTitle></ChapterContext></ChapterInfo><ChapterHeader><AuthorGroup><Author AffiliationIDS="Aff22"><AuthorName DisplayOrder="Western"><GivenName>Adnan</GivenName><GivenName>M.</GivenName><FamilyName>Salman</FamilyName></AuthorName><Contact><Email>adnan@cs.uoregon.edu</Email></Contact></Author><Author AffiliationIDS="Aff22"><AuthorName DisplayOrder="Western"><GivenName>Allen</GivenName><GivenName>D.</GivenName><FamilyName>Malony</FamilyName></AuthorName><Contact><Email>malony@cs.uoregon.edu</Email></Contact></Author><Author AffiliationIDS="Aff22"><AuthorName DisplayOrder="Western"><GivenName>Matthew</GivenName><GivenName>J.</GivenName><FamilyName>Sottile</FamilyName></AuthorName><Contact><Email>matt@cs.uoregon.edu</Email></Contact></Author><Affiliation ID="Aff22"><OrgDivision>Dept. Computer and Information Science</OrgDivision><OrgName>University of Oregon</OrgName><OrgAddress><City>Eugene</City><Postcode>OR 97403</Postcode><Country>USA</Country></OrgAddress></Affiliation></AuthorGroup><Abstract ID="Abs1" Language="En"><Heading>Abstract</Heading><Para>In scientific domains where discovery is driven by simulation modeling there are found common methodologies and procedures applied for scientific investigation. ODESSI (Open Domain-extensible Environment for Simulation-based Scientific Investigation) is an environment to facilitate the representation and automatic conduction of scientific studies by capturing common methods for experimentation, analysis, and evaluation used in simulation science. Specific methods ODESSI will support include <Emphasis Type="Italic">parameter studies</Emphasis>, <Emphasis Type="Italic">optimization</Emphasis>, <Emphasis Type="Italic">uncertainty quantification</Emphasis>, and <Emphasis Type="Italic">sensitivity analysis</Emphasis>. By making these methods accessible in a programmable framework, ODESSI can be used to capture and run domain-specific investigations. ODESSI is demonstrated for a problem in the neuroscience domain involving computational modeling of human head electromagnetics for conductivity analysis and source localization.</Para></Abstract></ChapterHeader><NoBody></NoBody></Chapter></Part></Book></Series></Publisher></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI)</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI)</title></titleInfo><name type="personal"><namePart type="given">Adnan</namePart><namePart type="given">M.</namePart><namePart type="family">Salman</namePart><affiliation>Dept. Computer and Information Science, University of Oregon, OR 97403, Eugene, USA</affiliation><affiliation>E-mail: adnan@cs.uoregon.edu</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Allen</namePart><namePart type="given">D.</namePart><namePart type="family">Malony</namePart><affiliation>Dept. Computer and Information Science, University of Oregon, OR 97403, Eugene, USA</affiliation><affiliation>E-mail: malony@cs.uoregon.edu</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Matthew</namePart><namePart type="given">J.</namePart><namePart type="family">Sottile</namePart><affiliation>Dept. Computer and Information Science, University of Oregon, OR 97403, Eugene, USA</affiliation><affiliation>E-mail: matt@cs.uoregon.edu</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="conference" displayLabel="OriginalPaper"></genre><originInfo><publisher>Springer Berlin Heidelberg</publisher><place><placeTerm type="text">Berlin, Heidelberg</placeTerm></place><dateIssued encoding="w3cdtf">2009</dateIssued><copyrightDate encoding="w3cdtf">2009</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">Abstract: In scientific domains where discovery is driven by simulation modeling there are found common methodologies and procedures applied for scientific investigation. ODESSI (Open Domain-extensible Environment for Simulation-based Scientific Investigation) is an environment to facilitate the representation and automatic conduction of scientific studies by capturing common methods for experimentation, analysis, and evaluation used in simulation science. Specific methods ODESSI will support include parameter studies, optimization, uncertainty quantification, and sensitivity analysis. By making these methods accessible in a programmable framework, ODESSI can be used to capture and run domain-specific investigations. ODESSI is demonstrated for a problem in the neuroscience domain involving computational modeling of human head electromagnetics for conductivity analysis and source localization.</abstract><relatedItem type="host"><titleInfo><title>Computational Science – ICCS 2009</title><subTitle>9th International Conference Baton Rouge, LA, USA, May 25-27, 2009 Proceedings, Part I</subTitle></titleInfo><name type="personal"><namePart type="given">Gabrielle</namePart><namePart type="family">Allen</namePart><affiliation>Center for Computation & Technology, Louisiana State University, 216 Johnston Hall, LA 70803, Baton Rouge, USA</affiliation><affiliation>E-mail: gallen@cct.lsu.edu</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Jarosław</namePart><namePart type="family">Nabrzyski</namePart><affiliation>Poznań Supercomputing and Networking Center, Poznań, Poland</affiliation><affiliation>E-mail: 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