HVEM DataGrid: Implementation of a Biologic Data Management System for Experiments with High Voltage Electron Microscope
Identifieur interne : 000379 ( Istex/Corpus ); précédent : 000378; suivant : 000380HVEM DataGrid: Implementation of a Biologic Data Management System for Experiments with High Voltage Electron Microscope
Auteurs : Young Jung ; Soon Cho ; Y. Yeom ; S. Kweon ; Jysoo LeeSource :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2007.
Abstract
Abstract : This paper proposes High Voltage Electron Microscope (HVEM) DataGrid for biological data management. HVEM DataGrid allows researchers to share the results of their biological experiments using HVEM, so that they can analyze them together to perform good research. The proposed system is for people whose primary work is to access HVEM, to obtain experimental results for biological samples and to store or retrieve them on HVEM DataGrid. The architecture of the HVEM Grid[3] is designed to materialize all the necessary conditions in allowing the user 1) to control every part of HVEM in a fine-grained manner, 2) to check the HVEM and observe various states of the specimen, 3) to manipulate their high resolution 2-D and 3-D images, and 4) to handle the experimental data including storing and searching them. HVEM DataGrid, a subsystem of the HVEM Grid system, is to provide a simple web-based controlling method for remote biological data.
Url:
DOI: 10.1007/978-3-540-69968-2_13
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HVEM DataGrid allows researchers to share the results of their biological experiments using HVEM, so that they can analyze them together to perform good research. The proposed system is for people whose primary work is to access HVEM, to obtain experimental results for biological samples and to store or retrieve them on HVEM DataGrid. The architecture of the HVEM Grid[3] is designed to materialize all the necessary conditions in allowing the user 1) to control every part of HVEM in a fine-grained manner, 2) to check the HVEM and observe various states of the specimen, 3) to manipulate their high resolution 2-D and 3-D images, and 4) to handle the experimental data including storing and searching them. HVEM DataGrid, a subsystem of the HVEM Grid system, is to provide a simple web-based controlling method for remote biological data.</div></front></TEI><istex><corpusName>springer</corpusName><author><json:item><name>Im Young Jung</name><affiliations><json:string>School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea</json:string><json:string>E-mail: iyjung@dcslab.snu.ac.kr</json:string></affiliations></json:item><json:item><name>In Soon Cho</name><affiliations><json:string>School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea</json:string><json:string>E-mail: ischo@dcslab.snu.ac.kr</json:string></affiliations></json:item><json:item><name>Heon Y. Yeom</name><affiliations><json:string>School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea</json:string><json:string>E-mail: yeom@dcslab.snu.ac.kr</json:string></affiliations></json:item><json:item><name>Hee S. 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Electron Microscope</ChapterTitle><ChapterFirstPage>175</ChapterFirstPage><ChapterLastPage>190</ChapterLastPage><ChapterCopyright><CopyrightHolderName>Springer Berlin Heidelberg</CopyrightHolderName><CopyrightYear>2007</CopyrightYear></ChapterCopyright><ChapterGrants Type="Regular"><MetadataGrant Grant="OpenAccess"></MetadataGrant><AbstractGrant Grant="OpenAccess"></AbstractGrant><BodyPDFGrant Grant="Restricted"></BodyPDFGrant><BodyHTMLGrant Grant="Restricted"></BodyHTMLGrant><BibliographyGrant Grant="Restricted"></BibliographyGrant><ESMGrant Grant="Restricted"></ESMGrant></ChapterGrants></ChapterInfo><ChapterHeader><AuthorGroup><Author AffiliationIDS="Aff1"><AuthorName DisplayOrder="Western"><GivenName>Im</GivenName><GivenName>Young</GivenName><FamilyName>Jung</FamilyName></AuthorName><Contact><Email>iyjung@dcslab.snu.ac.kr</Email></Contact></Author><Author AffiliationIDS="Aff1"><AuthorName DisplayOrder="Western"><GivenName>In</GivenName><GivenName>Soon</GivenName><FamilyName>Cho</FamilyName></AuthorName><Contact><Email>ischo@dcslab.snu.ac.kr</Email></Contact></Author><Author AffiliationIDS="Aff1"><AuthorName DisplayOrder="Western"><GivenName>Heon</GivenName><GivenName>Y.</GivenName><FamilyName>Yeom</FamilyName></AuthorName><Contact><Email>yeom@dcslab.snu.ac.kr</Email></Contact></Author><Author AffiliationIDS="Aff2"><AuthorName DisplayOrder="Western"><GivenName>Hee</GivenName><GivenName>S.</GivenName><FamilyName>Kweon</FamilyName></AuthorName><Contact><Email>hskweon@kbsi.re.kr</Email></Contact></Author><Author AffiliationIDS="Aff3"><AuthorName DisplayOrder="Western"><GivenName>Jysoo</GivenName><FamilyName>Lee</FamilyName></AuthorName><Contact><Email>jysoo@kisti.re.kr</Email></Contact></Author><Affiliation ID="Aff1"><OrgName>School of Computer Science and Engineering, Seoul National University, Seoul 151-742</OrgName><OrgAddress><Country>Korea</Country></OrgAddress></Affiliation><Affiliation ID="Aff2"><OrgName>Electron Microscopy Team, KBSI, Taejon</OrgName><OrgAddress><Country>Korea</Country></OrgAddress></Affiliation><Affiliation ID="Aff3"><OrgName>Supercomputing Center, KISTI, Taejon</OrgName><OrgAddress><Country>Korea</Country></OrgAddress></Affiliation></AuthorGroup><Abstract ID="Abs1" Language="En"><Heading><Emphasis Type="Bold">Abstract</Emphasis></Heading><Para>This paper proposes High Voltage Electron Microscope (HVEM) DataGrid for biological data management. HVEM DataGrid allows researchers to share the results of their biological experiments using HVEM, so that they can analyze them together to perform good research. The proposed system is for people whose primary work is to access HVEM, to obtain experimental results for biological samples and to store or retrieve them on HVEM DataGrid. The architecture of the HVEM Grid[3] is designed to materialize all the necessary conditions in allowing the user 1) to control every part of HVEM in a fine-grained manner, 2) to check the HVEM and observe various states of the specimen, 3) to manipulate their high resolution 2-D and 3-D images, and 4) to handle the experimental data including storing and searching them. HVEM DataGrid, a subsystem of the HVEM Grid system, is to provide a simple web-based controlling method for remote biological data.</Para></Abstract></ChapterHeader><NoBody></NoBody></Chapter></Part></Book></Series></Publisher></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>HVEM DataGrid: Implementation of a Biologic Data Management System for Experiments with High Voltage Electron Microscope</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>HVEM DataGrid: Implementation of a Biologic Data Management System for Experiments with High Voltage Electron Microscope</title></titleInfo><name type="personal"><namePart type="given">Im</namePart><namePart type="given">Young</namePart><namePart type="family">Jung</namePart><affiliation>School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea</affiliation><affiliation>E-mail: iyjung@dcslab.snu.ac.kr</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">In</namePart><namePart type="given">Soon</namePart><namePart type="family">Cho</namePart><affiliation>School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea</affiliation><affiliation>E-mail: ischo@dcslab.snu.ac.kr</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Heon</namePart><namePart type="given">Y.</namePart><namePart type="family">Yeom</namePart><affiliation>School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea</affiliation><affiliation>E-mail: yeom@dcslab.snu.ac.kr</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Hee</namePart><namePart type="given">S.</namePart><namePart type="family">Kweon</namePart><affiliation>Electron Microscopy Team, KBSI, Taejon, Korea</affiliation><affiliation>E-mail: hskweon@kbsi.re.kr</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Jysoo</namePart><namePart type="family">Lee</namePart><affiliation>Supercomputing Center, KISTI, Taejon, Korea</affiliation><affiliation>E-mail: jysoo@kisti.re.kr</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="conference" displayLabel="OriginalPaper"></genre><originInfo><publisher>Springer Berlin Heidelberg</publisher><place><placeTerm type="text">Berlin, Heidelberg</placeTerm></place><dateIssued encoding="w3cdtf">2007</dateIssued><copyrightDate encoding="w3cdtf">2007</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">Abstract : This paper proposes High Voltage Electron Microscope (HVEM) DataGrid for biological data management. HVEM DataGrid allows researchers to share the results of their biological experiments using HVEM, so that they can analyze them together to perform good research. The proposed system is for people whose primary work is to access HVEM, to obtain experimental results for biological samples and to store or retrieve them on HVEM DataGrid. The architecture of the HVEM Grid[3] is designed to materialize all the necessary conditions in allowing the user 1) to control every part of HVEM in a fine-grained manner, 2) to check the HVEM and observe various states of the specimen, 3) to manipulate their high resolution 2-D and 3-D images, and 4) to handle the experimental data including storing and searching them. HVEM DataGrid, a subsystem of the HVEM Grid system, is to provide a simple web-based controlling method for remote biological data.</abstract><relatedItem type="host"><titleInfo><title>Distributed, High-Performance and Grid Computing in Computational Biology</title><subTitle>International Workshop, GCCB 2006, Eilat, Israel, January 21, 2007. 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