OpenFlyData: The Way to Go for Biological Data Integration
Identifieur interne : 000290 ( Istex/Corpus ); précédent : 000289; suivant : 000291OpenFlyData: The Way to Go for Biological Data Integration
Auteurs : Jun Zhao ; Alistair Miles ; Graham Klyne ; David ShottonSource :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2009.
Abstract
Abstract: Although many applications have attempted to provide integrative access to distributed datasets, domain scientists largely continue to harvest research data in a conventional way, by consulting each resource independently, because such applications do not fully meet users’ needs. This paper describes OpenFlyData ( http://openflydata.org/ ), a simple user-led service providing Drosophila researchers with integrated access to distributed information. This is an exemplar lightweight solution to the problems of data integration, in which accurate and explicit data modelling enables high precision information retrieval.
Url:
DOI: 10.1007/978-3-642-02879-3_5
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ISTEX:022051DBE931A6F79069B80F2FCAAA08D39D379CLe document en format XML
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This paper describes OpenFlyData ( http://openflydata.org/ ), a simple user-led service providing Drosophila researchers with integrated access to distributed information. 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type="ChapterID">Chap5</idno></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>2009</date></creation><langUsage><language ident="en">en</language></langUsage><abstract xml:lang="en"><p>Abstract: Although many applications have attempted to provide integrative access to distributed datasets, domain scientists largely continue to harvest research data in a conventional way, by consulting each resource independently, because such applications do not fully meet users’ needs. This paper describes OpenFlyData ( http://openflydata.org/ ), a simple user-led service providing Drosophila researchers with integrated access to distributed information. This is an exemplar lightweight solution to the problems of data integration, in which accurate and explicit data modelling enables high precision information retrieval.</p></abstract><textClass><keywords scheme="Book-Subject-Collection"><list><label>SUCO11645</label><item><term>Computer Science</term></item></list></keywords></textClass><textClass><keywords scheme="Book-Subject-Group"><list><label>I</label><label>I18030</label><label>I18040</label><label>I18024</label><label>I23050</label><label>L17004</label><label>H28009</label><item><term>Computer Science</term></item><item><term>Data Mining and Knowledge Discovery</term></item><item><term>Information Systems Applications (incl.Internet)</term></item><item><term>Database Management</term></item><item><term>Computational Biology/Bioinformatics</term></item><item><term>Computer Appl. in Life Sciences</term></item><item><term>Health Informatics</term></item></list></keywords></textClass></profileDesc><revisionDesc><change 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Manchester, UK, July 20-22, 2009. Proceedings</BookSubTitle><BookVolumeNumber>5647</BookVolumeNumber><BookSequenceNumber>5647</BookSequenceNumber><BookDOI>10.1007/978-3-642-02879-3</BookDOI><BookTitleID>189538</BookTitleID><BookPrintISBN>978-3-642-02878-6</BookPrintISBN><BookElectronicISBN>978-3-642-02879-3</BookElectronicISBN><BookChapterCount>17</BookChapterCount><BookCopyright><CopyrightHolderName>Springer Berlin Heidelberg</CopyrightHolderName><CopyrightYear>2009</CopyrightYear></BookCopyright><BookSubjectGroup><BookSubject Code="I" Type="Primary">Computer Science</BookSubject><BookSubject Code="I18030" Priority="1" Type="Secondary">Data Mining and Knowledge Discovery</BookSubject><BookSubject Code="I18040" Priority="2" Type="Secondary">Information Systems Applications (incl.Internet)</BookSubject><BookSubject Code="I18024" Priority="3" Type="Secondary">Database Management</BookSubject><BookSubject Code="I23050" Priority="4" Type="Secondary">Computational Biology/Bioinformatics</BookSubject><BookSubject Code="L17004" Priority="5" Type="Secondary">Computer Appl. in Life Sciences</BookSubject><BookSubject Code="H28009" Priority="6" Type="Secondary">Health Informatics</BookSubject><SubjectCollection Code="SUCO11645">Computer Science</SubjectCollection></BookSubjectGroup><BookContext><SeriesID>558</SeriesID><SubSeriesID>5381</SubSeriesID></BookContext></BookInfo><BookHeader><EditorGroup><Editor AffiliationIDS="Aff19"><EditorName DisplayOrder="Western"><GivenName>Norman</GivenName><GivenName>W.</GivenName><FamilyName>Paton</FamilyName></EditorName><Contact><Email>npaton@manchester.ac.uk</Email></Contact></Editor><Editor AffiliationIDS="Aff19"><EditorName DisplayOrder="Western"><GivenName>Paolo</GivenName><FamilyName>Missier</FamilyName></EditorName><Contact><Email>pmissier@acm.org</Email></Contact></Editor><Editor AffiliationIDS="Aff20"><EditorName DisplayOrder="Western"><GivenName>Cornelia</GivenName><FamilyName>Hedeler</FamilyName></EditorName><Contact><Email>chedeler@cs.manchester.ac.uk</Email></Contact></Editor><Affiliation ID="Aff19"><OrgDivision>School of Computer Science</OrgDivision><OrgName>University of Manchester</OrgName><OrgAddress><Postcode>M13 9PL</Postcode><City>Manchester</City><Country>UK</Country></OrgAddress></Affiliation><Affiliation ID="Aff20"><OrgDivision>School of Computer Science</OrgDivision><OrgName>The University of Manchester</OrgName><OrgAddress><Street>Oxford Road</Street><Postcode>M13 9PL</Postcode><City>Manchester</City><Country>UK</Country></OrgAddress></Affiliation></EditorGroup></BookHeader><Part ID="Part2"><PartInfo TocLevels="0"><PartID>2</PartID><PartSequenceNumber>2</PartSequenceNumber><PartTitle>Graph-Based Modelling and Integration</PartTitle><PartChapterCount>3</PartChapterCount><PartContext><SeriesID>558</SeriesID><BookTitle>Data Integration in the Life Sciences</BookTitle></PartContext></PartInfo><Chapter ID="Chap5" Language="En"><ChapterInfo ChapterType="OriginalPaper" ContainsESM="No" NumberingStyle="Unnumbered" TocLevels="0"><ChapterID>5</ChapterID><ChapterDOI>10.1007/978-3-642-02879-3_5</ChapterDOI><ChapterSequenceNumber>5</ChapterSequenceNumber><ChapterTitle Language="En">OpenFlyData: The Way to Go for Biological Data Integration</ChapterTitle><ChapterFirstPage>47</ChapterFirstPage><ChapterLastPage>54</ChapterLastPage><ChapterCopyright><CopyrightHolderName>Springer-Verlag Berlin Heidelberg</CopyrightHolderName><CopyrightYear>2009</CopyrightYear></ChapterCopyright><ChapterGrants Type="Regular"><MetadataGrant Grant="OpenAccess"></MetadataGrant><AbstractGrant Grant="OpenAccess"></AbstractGrant><BodyPDFGrant Grant="Restricted"></BodyPDFGrant><BodyHTMLGrant Grant="Restricted"></BodyHTMLGrant><BibliographyGrant Grant="Restricted"></BibliographyGrant><ESMGrant Grant="Restricted"></ESMGrant></ChapterGrants><ChapterContext><SeriesID>558</SeriesID><PartID>2</PartID><BookID>978-3-642-02879-3</BookID><BookTitle>Data Integration in the Life Sciences</BookTitle></ChapterContext></ChapterInfo><ChapterHeader><AuthorGroup><Author AffiliationIDS="Aff21"><AuthorName DisplayOrder="Western"><GivenName>Jun</GivenName><FamilyName>Zhao</FamilyName></AuthorName><Contact><Email>jun.zhao@zoo.ox.ac.uk</Email></Contact></Author><Author AffiliationIDS="Aff21"><AuthorName DisplayOrder="Western"><GivenName>Alistair</GivenName><FamilyName>Miles</FamilyName></AuthorName><Contact><Email>alistair.miles@zoo.ox.ac.uk</Email></Contact></Author><Author AffiliationIDS="Aff21"><AuthorName DisplayOrder="Western"><GivenName>Graham</GivenName><FamilyName>Klyne</FamilyName></AuthorName><Contact><Email>graham.klyne@zoo.ox.ac.uk</Email></Contact></Author><Author AffiliationIDS="Aff21"><AuthorName DisplayOrder="Western"><GivenName>David</GivenName><FamilyName>Shotton</FamilyName></AuthorName><Contact><Email>david.shotton@zoo.ox.ac.uk</Email></Contact></Author><Affiliation ID="Aff21"><OrgDivision>Department of Zoology</OrgDivision><OrgName>University of Oxford</OrgName><OrgAddress><Street>South Parks Road</Street><City>Oxford</City><Postcode>OX3 1PS</Postcode><Country>UK</Country></OrgAddress></Affiliation></AuthorGroup><Abstract ID="Abs1" Language="En"><Heading>Abstract</Heading><Para>Although many applications have attempted to provide integrative access to distributed datasets, domain scientists largely continue to harvest research data in a conventional way, by consulting each resource independently, because such applications do not fully meet users’ needs. This paper describes OpenFlyData (<ExternalRef><RefSource><Literal>http://openflydata.org/</Literal></RefSource><RefTarget Address="http://openflydata.org/" TargetType="URL"></RefTarget></ExternalRef>), a simple user-led service providing <Emphasis Type="Italic">Drosophila</Emphasis> researchers with integrated access to distributed information. This is an exemplar lightweight solution to the problems of data integration, in which accurate and explicit data modelling enables high precision information retrieval.</Para></Abstract><KeywordGroup Language="En"><Heading>Keywords</Heading><Keyword>data integration</Keyword><Keyword>user-led</Keyword><Keyword>life science</Keyword><Keyword>semantic web</Keyword></KeywordGroup></ChapterHeader><NoBody></NoBody></Chapter></Part></Book></Series></Publisher></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>OpenFlyData: The Way to Go for Biological Data Integration</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>OpenFlyData: The Way to Go for Biological Data Integration</title></titleInfo><name type="personal"><namePart type="given">Jun</namePart><namePart type="family">Zhao</namePart><affiliation>Department of Zoology, University of Oxford, South Parks Road, OX3 1PS, Oxford, UK</affiliation><affiliation>E-mail: jun.zhao@zoo.ox.ac.uk</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Alistair</namePart><namePart type="family">Miles</namePart><affiliation>Department of Zoology, University of Oxford, South Parks Road, OX3 1PS, Oxford, UK</affiliation><affiliation>E-mail: alistair.miles@zoo.ox.ac.uk</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Graham</namePart><namePart type="family">Klyne</namePart><affiliation>Department of Zoology, University of Oxford, South Parks Road, OX3 1PS, Oxford, UK</affiliation><affiliation>E-mail: graham.klyne@zoo.ox.ac.uk</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">David</namePart><namePart type="family">Shotton</namePart><affiliation>Department of Zoology, University of Oxford, South Parks Road, OX3 1PS, Oxford, UK</affiliation><affiliation>E-mail: david.shotton@zoo.ox.ac.uk</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="conference" displayLabel="OriginalPaper"></genre><originInfo><publisher>Springer Berlin Heidelberg</publisher><place><placeTerm type="text">Berlin, Heidelberg</placeTerm></place><dateIssued encoding="w3cdtf">2009</dateIssued><copyrightDate encoding="w3cdtf">2009</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">Abstract: Although many applications have attempted to provide integrative access to distributed datasets, domain scientists largely continue to harvest research data in a conventional way, by consulting each resource independently, because such applications do not fully meet users’ needs. This paper describes OpenFlyData ( http://openflydata.org/ ), a simple user-led service providing Drosophila researchers with integrated access to distributed information. This is an exemplar lightweight solution to the problems of data integration, in which accurate and explicit data modelling enables high precision information retrieval.</abstract><relatedItem type="host"><titleInfo><title>Data Integration in the Life Sciences</title><subTitle>6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009. 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California, Los Angeles, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Doug</namePart><namePart type="family">Tygar</namePart><affiliation>University of California, Berkeley, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Moshe</namePart><namePart type="given">Y.</namePart><namePart type="family">Vardi</namePart><affiliation>Rice University, Houston, TX, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Gerhard</namePart><namePart type="family">Weikum</namePart><affiliation>Max-Planck Institute of Computer Science, Saarbrücken, Germany</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Sorin</namePart><namePart type="family">Istrail</namePart><affiliation>Brown University, Providence, RI, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Pavel</namePart><namePart type="family">Pevzner</namePart><affiliation>University of California, San Diego, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Michael</namePart><namePart type="given">S.</namePart><namePart type="family">Waterman</namePart><affiliation>University of Southern California, Los Angeles, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Norman</namePart><namePart type="given">W.</namePart><namePart type="family">Paton</namePart><affiliation>School of Computer Science, University of Manchester, M13 9PL, Manchester, UK</affiliation><affiliation>E-mail: npaton@manchester.ac.uk</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Paolo</namePart><namePart type="family">Missier</namePart><affiliation>School of Computer Science, University of Manchester, M13 9PL, Manchester, UK</affiliation><affiliation>E-mail: pmissier@acm.org</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Cornelia</namePart><namePart type="family">Hedeler</namePart><affiliation>School of Computer Science, The University of Manchester, Oxford Road, M13 9PL, Manchester, UK</affiliation><affiliation>E-mail: chedeler@cs.manchester.ac.uk</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><genre type="sub-series"></genre><identifier type="ISSN">0302-9743</identifier><identifier type="eISSN">1611-3349</identifier><identifier type="SubSeriesID">5381</identifier></relatedItem><identifier type="ISSN">0302-9743</identifier><identifier type="eISSN">1611-3349</identifier><identifier type="SeriesID">558</identifier><recordInfo><recordOrigin>Springer Berlin 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