A Second-Generation Device for Automated Training and Quantitative Behavior Analyses of Molecularly-Tractable Model Organisms
Identifieur interne : 001823 ( Ncbi/Checkpoint ); précédent : 001822; suivant : 001824A Second-Generation Device for Automated Training and Quantitative Behavior Analyses of Molecularly-Tractable Model Organisms
Auteurs : Douglas Blackiston [États-Unis] ; Tal Shomrat [États-Unis] ; Cindy L. Nicolas [États-Unis] ; Christopher Granata [États-Unis] ; Michael Levin [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2010.
Abstract
A deep understanding of cognitive processes requires functional, quantitative analyses of the steps leading from genetics and the development of nervous system structure to behavior. Molecularly-tractable model systems such as
Url:
DOI: 10.1371/journal.pone.0014370
PubMed: 21179424
PubMed Central: 3003703
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A Second-Generation Device for Automated Training and Quantitative Behavior Analyses of Molecularly-Tractable Model Organisms</title><author><name sortKey="Blackiston, Douglas" sort="Blackiston, Douglas" uniqKey="Blackiston D" first="Douglas" last="Blackiston">Douglas Blackiston</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Regenerative and Developmental Biology, Forsyth Institute, Boston, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Regenerative and Developmental Biology, Forsyth Institute, Boston, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Shomrat, Tal" sort="Shomrat, Tal" uniqKey="Shomrat T" first="Tal" last="Shomrat">Tal Shomrat</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Nicolas, Cindy L" sort="Nicolas, Cindy L" uniqKey="Nicolas C" first="Cindy L." last="Nicolas">Cindy L. Nicolas</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Granata, Christopher" sort="Granata, Christopher" uniqKey="Granata C" first="Christopher" last="Granata">Christopher Granata</name><affiliation wicri:level="2"><nlm:aff id="aff3"><addr-line>Boston Engineering Corporation, Waltham, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston Engineering Corporation, Waltham, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Levin, Michael" sort="Levin, Michael" uniqKey="Levin M" first="Michael" last="Levin">Michael Levin</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21179424</idno><idno type="pmc">3003703</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3003703</idno><idno type="RBID">PMC:3003703</idno><idno type="doi">10.1371/journal.pone.0014370</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">002395</idno><idno type="wicri:Area/Pmc/Curation">002395</idno><idno type="wicri:Area/Pmc/Checkpoint">001F79</idno><idno type="wicri:Area/Ncbi/Merge">001823</idno><idno type="wicri:Area/Ncbi/Curation">001823</idno><idno type="wicri:Area/Ncbi/Checkpoint">001823</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A Second-Generation Device for Automated Training and Quantitative Behavior Analyses of Molecularly-Tractable Model Organisms</title><author><name sortKey="Blackiston, Douglas" sort="Blackiston, Douglas" uniqKey="Blackiston D" first="Douglas" last="Blackiston">Douglas Blackiston</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Regenerative and Developmental Biology, Forsyth Institute, Boston, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Regenerative and Developmental Biology, Forsyth Institute, Boston, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Shomrat, Tal" sort="Shomrat, Tal" uniqKey="Shomrat T" first="Tal" last="Shomrat">Tal Shomrat</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Nicolas, Cindy L" sort="Nicolas, Cindy L" uniqKey="Nicolas C" first="Cindy L." last="Nicolas">Cindy L. Nicolas</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Granata, Christopher" sort="Granata, Christopher" uniqKey="Granata C" first="Christopher" last="Granata">Christopher Granata</name><affiliation wicri:level="2"><nlm:aff id="aff3"><addr-line>Boston Engineering Corporation, Waltham, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston Engineering Corporation, Waltham, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Levin, Michael" sort="Levin, Michael" uniqKey="Levin M" first="Michael" last="Levin">Michael Levin</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department and Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>A deep understanding of cognitive processes requires functional, quantitative analyses of the steps leading from genetics and the development of nervous system structure to behavior. Molecularly-tractable model systems such as <italic>Xenopus laevis</italic> and planaria offer an unprecedented opportunity to dissect the mechanisms determining the complex structure of the brain and CNS. A standardized platform that facilitated quantitative analysis of behavior would make a significant impact on evolutionary ethology, neuropharmacology, and cognitive science. While some animal tracking systems exist, the available systems do not allow automated training (feedback to individual subjects in real time, which is necessary for operant conditioning assays). The lack of standardization in the field, and the numerous technical challenges that face the development of a versatile system with the necessary capabilities, comprise a significant barrier keeping molecular developmental biology labs from integrating behavior analysis endpoints into their pharmacological and genetic perturbations. Here we report the development of a second-generation system that is a highly flexible, powerful machine vision and environmental control platform. In order to enable multidisciplinary studies aimed at understanding the roles of genes in brain function and behavior, and aid other laboratories that do not have the facilities to undergo complex engineering development, we describe the device and the problems that it overcomes. We also present sample data using frog tadpoles and flatworms to illustrate its use. 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uniqKey="Mcgrath P">P McGrath</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ton, C" uniqKey="Ton C">C Ton</name></author><author><name sortKey="Parng, C" uniqKey="Parng C">C Parng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Parng, C" uniqKey="Parng C">C Parng</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Massachusetts</li></region></list><tree><country name="États-Unis"><region name="Massachusetts"><name sortKey="Blackiston, Douglas" sort="Blackiston, Douglas" uniqKey="Blackiston D" first="Douglas" last="Blackiston">Douglas Blackiston</name></region><name sortKey="Blackiston, Douglas" sort="Blackiston, Douglas" uniqKey="Blackiston D" first="Douglas" last="Blackiston">Douglas Blackiston</name><name sortKey="Granata, Christopher" sort="Granata, Christopher" uniqKey="Granata C" first="Christopher" last="Granata">Christopher Granata</name><name sortKey="Levin, Michael" sort="Levin, Michael" uniqKey="Levin M" first="Michael" last="Levin">Michael Levin</name><name sortKey="Nicolas, Cindy L" sort="Nicolas, Cindy L" uniqKey="Nicolas C" first="Cindy L." last="Nicolas">Cindy L. 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