Comparing position and force control for interactive molecular simulators with haptic feedback.
Identifieur interne : 003797 ( Main/Curation ); précédent : 003796; suivant : 003798Comparing position and force control for interactive molecular simulators with haptic feedback.
Auteurs : Aude Bolopion [France] ; Barthélemy Cagneau ; Stephane Redon ; Stéphane RégnierSource :
- Journal of molecular graphics & modelling [ 1873-4243 ] ; 2010.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Alanine, Anti-HIV Agents, Water.
- Algorithms, Biomechanical Phenomena, Molecular Dynamics Simulation, Software, Touch Perception, User-Computer Interface.
- mix :
Abstract
This paper presents a novel tool for the analysis of new molecular structures which enables a wide variety of manipulations. It is composed of a molecular simulator and a haptic device. The simulation software deals with systems of hundreds or thousands of degrees of freedom and computes the reconfiguration of the molecules in a few tenths of a second. For the ease of manipulation and to help the operator understand nanoscale phenomena, a haptic device is connected to the simulator. To handle a wide variety of applications, both position and force control are implemented. To our knowledge, this is the first time the applications of force control are detailed for molecular simulation. These two control modes are compared in terms of adequacy with molecular dynamics, transparency and stability sensitivity with respect to environmental conditions. Based on their specificity the operations they can realize are detailed. Experiments highlight the usability of our tool for the different steps of the analysis of molecular structures. It includes the global reconfiguration of a molecular system, the measurement of molecular properties and the comprehension of nanoscale interactions. Compared to most existing systems, the one developed in this paper offers a wide range of possible experiments. The detailed analysis of the properties of the control modes can be easily used to implement haptic feedback on other molecular simulators.
Url:
DOI: 10.1016/j.jmgm.2010.06.003
PubMed: 20727801
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :001046
- to stream PubMed, to step Curation: Pour aller vers cette notice dans l'étape Curation :001046
- to stream PubMed, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000F81
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :001666
- to stream Ncbi, to step Curation: Pour aller vers cette notice dans l'étape Curation :001666
- to stream Ncbi, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :001666
- to stream Hal, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000116
- to stream Hal, to step Curation: Pour aller vers cette notice dans l'étape Curation :000116
- to stream Hal, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000318
- to stream Main, to step Merge: Pour aller vers cette notice dans l'étape Curation :003854
Links to Exploration step
pubmed:20727801Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Comparing position and force control for interactive molecular simulators with haptic feedback.</title>
<author><name sortKey="Bolopion, Aude" sort="Bolopion, Aude" uniqKey="Bolopion A" first="Aude" last="Bolopion">Aude Bolopion</name>
<affiliation wicri:level="3"><nlm:affiliation>Institut des Systèmes Intelligents et de Robotique, Université Pierre et Marie Curie-Paris 6, CNRS UMR 7222, 4 place Jussieu, 75005 Paris, France. aude.bolopion@isir.upmc.fr</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut des Systèmes Intelligents et de Robotique, Université Pierre et Marie Curie-Paris 6, CNRS UMR 7222, 4 place Jussieu, 75005 Paris</wicri:regionArea>
<placeName><region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Cagneau, Barthelemy" sort="Cagneau, Barthelemy" uniqKey="Cagneau B" first="Barthélemy" last="Cagneau">Barthélemy Cagneau</name>
</author>
<author><name sortKey="Redon, Stephane" sort="Redon, Stephane" uniqKey="Redon S" first="Stephane" last="Redon">Stephane Redon</name>
</author>
<author><name sortKey="Regnier, Stephane" sort="Regnier, Stephane" uniqKey="Regnier S" first="Stéphane" last="Régnier">Stéphane Régnier</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2010">2010</date>
<idno type="doi">10.1016/j.jmgm.2010.06.003</idno>
<idno type="RBID">pubmed:20727801</idno>
<idno type="pmid">20727801</idno>
<idno type="wicri:Area/PubMed/Corpus">001046</idno>
<idno type="wicri:Area/PubMed/Curation">001046</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000F81</idno>
<idno type="wicri:Area/Ncbi/Merge">001666</idno>
<idno type="wicri:Area/Ncbi/Curation">001666</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">001666</idno>
<idno type="wicri:source">HAL</idno>
<idno type="RBID">Hal:hal-00748030</idno>
<idno type="url">https://hal.archives-ouvertes.fr/hal-00748030</idno>
<idno type="wicri:Area/Hal/Corpus">000116</idno>
<idno type="wicri:Area/Hal/Curation">000116</idno>
<idno type="wicri:Area/Hal/Checkpoint">000318</idno>
<idno type="wicri:doubleKey">1093-3263:2010:Bolopion A:comparing:position:and</idno>
<idno type="wicri:Area/Main/Merge">003854</idno>
<idno type="wicri:Area/Main/Curation">003797</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Comparing position and force control for interactive molecular simulators with haptic feedback.</title>
<author><name sortKey="Bolopion, Aude" sort="Bolopion, Aude" uniqKey="Bolopion A" first="Aude" last="Bolopion">Aude Bolopion</name>
<affiliation wicri:level="3"><nlm:affiliation>Institut des Systèmes Intelligents et de Robotique, Université Pierre et Marie Curie-Paris 6, CNRS UMR 7222, 4 place Jussieu, 75005 Paris, France. aude.bolopion@isir.upmc.fr</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut des Systèmes Intelligents et de Robotique, Université Pierre et Marie Curie-Paris 6, CNRS UMR 7222, 4 place Jussieu, 75005 Paris</wicri:regionArea>
<placeName><region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Cagneau, Barthelemy" sort="Cagneau, Barthelemy" uniqKey="Cagneau B" first="Barthélemy" last="Cagneau">Barthélemy Cagneau</name>
</author>
<author><name sortKey="Redon, Stephane" sort="Redon, Stephane" uniqKey="Redon S" first="Stephane" last="Redon">Stephane Redon</name>
</author>
<author><name sortKey="Regnier, Stephane" sort="Regnier, Stephane" uniqKey="Regnier S" first="Stéphane" last="Régnier">Stéphane Régnier</name>
</author>
</analytic>
<series><title level="j">Journal of molecular graphics & modelling</title>
<idno type="eISSN">1873-4243</idno>
<imprint><date when="2010" type="published">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alanine (chemistry)</term>
<term>Algorithms</term>
<term>Anti-HIV Agents (chemistry)</term>
<term>Biomechanical Phenomena</term>
<term>Molecular Dynamics Simulation</term>
<term>Software</term>
<term>Touch Perception</term>
<term>User-Computer Interface</term>
<term>Water (chemistry)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Alanine</term>
<term>Anti-HIV Agents</term>
<term>Water</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Algorithms</term>
<term>Biomechanical Phenomena</term>
<term>Molecular Dynamics Simulation</term>
<term>Software</term>
<term>Touch Perception</term>
<term>User-Computer Interface</term>
</keywords>
<keywords scheme="mix" xml:lang="en"><term>Force feedback</term>
<term>Haptic coupling</term>
<term>Molecular simulation</term>
<term>Stability</term>
<term>Transparency</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">This paper presents a novel tool for the analysis of new molecular structures which enables a wide variety of manipulations. It is composed of a molecular simulator and a haptic device. The simulation software deals with systems of hundreds or thousands of degrees of freedom and computes the reconfiguration of the molecules in a few tenths of a second. For the ease of manipulation and to help the operator understand nanoscale phenomena, a haptic device is connected to the simulator. To handle a wide variety of applications, both position and force control are implemented. To our knowledge, this is the first time the applications of force control are detailed for molecular simulation. These two control modes are compared in terms of adequacy with molecular dynamics, transparency and stability sensitivity with respect to environmental conditions. Based on their specificity the operations they can realize are detailed. Experiments highlight the usability of our tool for the different steps of the analysis of molecular structures. It includes the global reconfiguration of a molecular system, the measurement of molecular properties and the comprehension of nanoscale interactions. Compared to most existing systems, the one developed in this paper offers a wide range of possible experiments. The detailed analysis of the properties of the control modes can be easily used to implement haptic feedback on other molecular simulators.</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/HapticV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003797 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 003797 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= HapticV1 |flux= Main |étape= Curation |type= RBID |clé= pubmed:20727801 |texte= Comparing position and force control for interactive molecular simulators with haptic feedback. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i -Sk "pubmed:20727801" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd \ | NlmPubMed2Wicri -a HapticV1
![]() | This area was generated with Dilib version V0.6.23. | ![]() |