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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">First New World Primate Papillomavirus Identification in the Atlantic Forest, Brazil: <italic>Alouatta guariba papillomavirus 1</italic></title><author><name sortKey="Silvestre, Rodrigo Vellasco Duarte" sort="Silvestre, Rodrigo Vellasco Duarte" uniqKey="Silvestre R" first="Rodrigo Vellasco Duarte" last="Silvestre">Rodrigo Vellasco Duarte Silvestre</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Souza, Alex Junior Souza" sort="De Souza, Alex Junior Souza" uniqKey="De Souza A" first="Alex Junior Souza" last="De Souza">Alex Junior Souza De Souza</name><affiliation><nlm:aff id="aff2"><addr-line>Section of Hepathology, Evandro Chagas Institute, Molecular Biology Laboratory, Ministry of Health, Belém, Brazil</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><addr-line>Department of Pathology, Veterinary Medicine and Animal Science Faculty, São Paulo University, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Junior, Edivaldo Costa Sousa" sort="Junior, Edivaldo Costa Sousa" uniqKey="Junior E" first="Edivaldo Costa Sousa" last="Júnior">Edivaldo Costa Sousa Júnior</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Silva, Allan Kaio" sort="Silva, Allan Kaio" uniqKey="Silva A" first="Allan Kaio" last="Silva">Allan Kaio Silva</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Mello, Wyller Alencar" sort="De Mello, Wyller Alencar" uniqKey="De Mello W" first="Wyller Alencar" last="De Mello">Wyller Alencar De Mello</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Nunes, Marcio Roberto T" sort="Nunes, Marcio Roberto T" uniqKey="Nunes M" first="Marcio Roberto T." last="Nunes">Marcio Roberto T. Nunes</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Junior, Joao Lidio S G V" sort="Junior, Joao Lidio S G V" uniqKey="Junior J" first="João Lídio S. G. V." last="Júnior">João Lídio S. G. V. Júnior</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Cardoso, Jedson Ferreira" sort="Cardoso, Jedson Ferreira" uniqKey="Cardoso J" first="Jedson Ferreira" last="Cardoso">Jedson Ferreira Cardoso</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Vasconcelos, Janaina Mota" sort="De Vasconcelos, Janaina Mota" uniqKey="De Vasconcelos J" first="Janaina Mota" last="De Vasconcelos">Janaina Mota De Vasconcelos</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Oliveira, Layanna Freitas" sort="De Oliveira, Layanna Freitas" uniqKey="De Oliveira L" first="Layanna Freitas" last="De Oliveira">Layanna Freitas De Oliveira</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Da Silva, Sandro Patroca" sort="Da Silva, Sandro Patroca" uniqKey="Da Silva S" first="Sandro Patroca" last="Da Silva">Sandro Patroca Da Silva</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Da Silva, Adriana Marques J" sort="Da Silva, Adriana Marques J" uniqKey="Da Silva A" first="Adriana Marques J." last="Da Silva">Adriana Marques J. Da Silva</name><affiliation><nlm:aff id="aff4"><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Fries, Brigida Gomes" sort="Fries, Brigida Gomes" uniqKey="Fries B" first="Brigida Gomes" last="Fries">Brigida Gomes Fries</name><affiliation><nlm:aff id="aff4"><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Summa, Maria Eugenia L" sort="Summa, Maria Eugenia L" uniqKey="Summa M" first="Maria Eugênia L." last="Summa">Maria Eugênia L. Summa</name><affiliation><nlm:aff id="aff4"><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Sa, Lilian Rose M" sort="De Sa, Lilian Rose M" uniqKey="De Sa L" first="Lilian Rose M." last="De Sá">Lilian Rose M. De Sá</name><affiliation><nlm:aff id="aff5"><addr-line>Department of Pathology, Veterinary Medicine and Animal Science Faculty, São Paulo University, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27540053</idno><idno type="pmc">4991698</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991698</idno><idno type="RBID">PMC:4991698</idno><idno type="doi">10.1128/genomeA.00725-16</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000079</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000079</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">First New World Primate Papillomavirus Identification in the Atlantic Forest, Brazil: <italic>Alouatta guariba papillomavirus 1</italic></title><author><name sortKey="Silvestre, Rodrigo Vellasco Duarte" sort="Silvestre, Rodrigo Vellasco Duarte" uniqKey="Silvestre R" first="Rodrigo Vellasco Duarte" last="Silvestre">Rodrigo Vellasco Duarte Silvestre</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Souza, Alex Junior Souza" sort="De Souza, Alex Junior Souza" uniqKey="De Souza A" first="Alex Junior Souza" last="De Souza">Alex Junior Souza De Souza</name><affiliation><nlm:aff id="aff2"><addr-line>Section of Hepathology, Evandro Chagas Institute, Molecular Biology Laboratory, Ministry of Health, Belém, Brazil</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><addr-line>Department of Pathology, Veterinary Medicine and Animal Science Faculty, São Paulo University, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Junior, Edivaldo Costa Sousa" sort="Junior, Edivaldo Costa Sousa" uniqKey="Junior E" first="Edivaldo Costa Sousa" last="Júnior">Edivaldo Costa Sousa Júnior</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Silva, Allan Kaio" sort="Silva, Allan Kaio" uniqKey="Silva A" first="Allan Kaio" last="Silva">Allan Kaio Silva</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Mello, Wyller Alencar" sort="De Mello, Wyller Alencar" uniqKey="De Mello W" first="Wyller Alencar" last="De Mello">Wyller Alencar De Mello</name><affiliation><nlm:aff id="aff1"><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Nunes, Marcio Roberto T" sort="Nunes, Marcio Roberto T" uniqKey="Nunes M" first="Marcio Roberto T." last="Nunes">Marcio Roberto T. Nunes</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Junior, Joao Lidio S G V" sort="Junior, Joao Lidio S G V" uniqKey="Junior J" first="João Lídio S. G. V." last="Júnior">João Lídio S. G. V. Júnior</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Cardoso, Jedson Ferreira" sort="Cardoso, Jedson Ferreira" uniqKey="Cardoso J" first="Jedson Ferreira" last="Cardoso">Jedson Ferreira Cardoso</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Vasconcelos, Janaina Mota" sort="De Vasconcelos, Janaina Mota" uniqKey="De Vasconcelos J" first="Janaina Mota" last="De Vasconcelos">Janaina Mota De Vasconcelos</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Oliveira, Layanna Freitas" sort="De Oliveira, Layanna Freitas" uniqKey="De Oliveira L" first="Layanna Freitas" last="De Oliveira">Layanna Freitas De Oliveira</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Da Silva, Sandro Patroca" sort="Da Silva, Sandro Patroca" uniqKey="Da Silva S" first="Sandro Patroca" last="Da Silva">Sandro Patroca Da Silva</name><affiliation><nlm:aff id="aff3"><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Da Silva, Adriana Marques J" sort="Da Silva, Adriana Marques J" uniqKey="Da Silva A" first="Adriana Marques J." last="Da Silva">Adriana Marques J. Da Silva</name><affiliation><nlm:aff id="aff4"><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Fries, Brigida Gomes" sort="Fries, Brigida Gomes" uniqKey="Fries B" first="Brigida Gomes" last="Fries">Brigida Gomes Fries</name><affiliation><nlm:aff id="aff4"><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="Summa, Maria Eugenia L" sort="Summa, Maria Eugenia L" uniqKey="Summa M" first="Maria Eugênia L." last="Summa">Maria Eugênia L. Summa</name><affiliation><nlm:aff id="aff4"><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author><author><name sortKey="De Sa, Lilian Rose M" sort="De Sa, Lilian Rose M" uniqKey="De Sa L" first="Lilian Rose M." last="De Sá">Lilian Rose M. De Sá</name><affiliation><nlm:aff id="aff5"><addr-line>Department of Pathology, Veterinary Medicine and Animal Science Faculty, São Paulo University, São Paulo, Brazil</addr-line></nlm:aff></affiliation></author></analytic><series><title level="j">Genome Announcements</title><idno type="eISSN">2169-8287</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>We report here the complete genome sequence of the first papillomavirus detected in a New World primate, howler monkey, <italic>Alouatta guariba clamitans papillomavirus 1</italic> (AgPV1), from the Atlantic Forest in São Paulo State, Brazil.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K Van Doorslaer</name></author><author><name sortKey="Tan, Q" uniqKey="Tan Q">Q Tan</name></author><author><name sortKey="Xirasagar, S" uniqKey="Xirasagar S">S Xirasagar</name></author><author><name sortKey="Bandaru, S" uniqKey="Bandaru S">S Bandaru</name></author><author><name sortKey="Gopalan, V" uniqKey="Gopalan V">V Gopalan</name></author><author><name sortKey="Mohamoud, Y" uniqKey="Mohamoud Y">Y Mohamoud</name></author><author><name sortKey="Huyen, Y" uniqKey="Huyen Y">Y Huyen</name></author><author><name sortKey="Mcbride, Aa" uniqKey="Mcbride A">AA McBride</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bergin, Il" uniqKey="Bergin I">IL Bergin</name></author><author><name sortKey="Bell, Jd" uniqKey="Bell J">JD Bell</name></author><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Zochowski, Mk" uniqKey="Zochowski M">MK Zochowski</name></author><author><name sortKey="Chai, D" uniqKey="Chai D">D Chai</name></author><author><name sortKey="Schmidt, K" uniqKey="Schmidt K">K Schmidt</name></author><author><name sortKey="Culmer, Dl" uniqKey="Culmer D">DL Culmer</name></author><author><name sortKey="Aronoff, Dm" uniqKey="Aronoff D">DM Aronoff</name></author><author><name sortKey="Patton, Dl" uniqKey="Patton D">DL Patton</name></author><author><name sortKey="Mwenda, Jm" uniqKey="Mwenda J">JM Mwenda</name></author><author><name sortKey="Wood, Ce" uniqKey="Wood C">CE Wood</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Joh, J" uniqKey="Joh J">J Joh</name></author><author><name sortKey="Hopper, K" uniqKey="Hopper K">K Hopper</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K Van Doorslaer</name></author><author><name sortKey="Sundberg, Jp" uniqKey="Sundberg J">JP Sundberg</name></author><author><name sortKey="Jenson, Ab" uniqKey="Jenson A">AB Jenson</name></author><author><name sortKey="Ghim, S J" uniqKey="Ghim S">S-J Ghim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K van Doorslaer</name></author><author><name sortKey="Desalle, R" uniqKey="Desalle R">R DeSalle</name></author><author><name sortKey="Wood, Ce" uniqKey="Wood C">CE Wood</name></author><author><name sortKey="Kaplan, Jr" uniqKey="Kaplan J">JR Kaplan</name></author><author><name sortKey="Wagner, Jd" uniqKey="Wagner J">JD Wagner</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ostrow, Rs" uniqKey="Ostrow R">RS Ostrow</name></author><author><name sortKey="Labresh, Kv" uniqKey="Labresh K">KV LaBresh</name></author><author><name sortKey="Faras, Aj" uniqKey="Faras A">AJ Faras</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rector, A" uniqKey="Rector A">A Rector</name></author><author><name sortKey="Van Ranst, M" uniqKey="Van Ranst M">M Van Ranst</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sa, Lr" uniqKey="Sa L">LR Sá</name></author><author><name sortKey="Diloreto, C" uniqKey="Diloreto C">C DiLoreto</name></author><author><name sortKey="Leite, Mc" uniqKey="Leite M">MC Leite</name></author><author><name sortKey="Wakamatsu, A" uniqKey="Wakamatsu A">A Wakamatsu</name></author><author><name sortKey="Santos, Rt" uniqKey="Santos R">RT Santos</name></author><author><name sortKey="Catao Dias, Jl" uniqKey="Catao Dias J">JL Catão-Dias</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mendes, Sl" uniqKey="Mendes S">SL Mendes</name></author><author><name sortKey="Rylands, Ab" uniqKey="Rylands A">AB Rylands</name></author><author><name sortKey="Kierulff, Mcm" uniqKey="Kierulff M">MCM Kierulff</name></author><author><name sortKey="De Oliveira, Mm" uniqKey="De Oliveira M">MM de Oliveira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, Sf" uniqKey="Altschul S">SF Altschul</name></author><author><name sortKey="Madden, Tl" uniqKey="Madden T">TL Madden</name></author><author><name sortKey="Sch Ffer, Aa" uniqKey="Sch Ffer A">AA Schäffer</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name></author><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z Zhang</name></author><author><name sortKey="Miller, W" uniqKey="Miller W">W Miller</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="brief-report"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Announc</journal-id><journal-id journal-id-type="iso-abbrev">Genome Announc</journal-id><journal-id journal-id-type="hwp">ga</journal-id><journal-id journal-id-type="pmc">ga</journal-id><journal-id journal-id-type="publisher-id">GA</journal-id><journal-title-group><journal-title>Genome Announcements</journal-title></journal-title-group><issn pub-type="epub">2169-8287</issn><publisher><publisher-name>American Society for Microbiology</publisher-name><publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27540053</article-id><article-id pub-id-type="pmc">4991698</article-id><article-id pub-id-type="publisher-id">genomeA00725-16</article-id><article-id pub-id-type="doi">10.1128/genomeA.00725-16</article-id><article-categories><subj-group subj-group-type="heading"><subject>Viruses</subject></subj-group></article-categories><title-group><article-title>First New World Primate Papillomavirus Identification in the Atlantic Forest, Brazil: <italic>Alouatta guariba papillomavirus 1</italic></article-title><alt-title alt-title-type="running-head">Genome Announcement</alt-title><alt-title alt-title-type="short-authors">Silvestre et al.</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Silvestre</surname><given-names>Rodrigo Vellasco Duarte</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>de Souza</surname><given-names>Alex Junior Souza</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref><xref ref-type="aff" rid="aff5"><sup>e</sup></xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Júnior</surname><given-names>Edivaldo Costa Sousa</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Silva</surname><given-names>Allan Kaio</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>de Mello</surname><given-names>Wyller Alencar</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Nunes</surname><given-names>Marcio Roberto T.</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Júnior</surname><given-names>João Lídio S. G. V.</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Cardoso</surname><given-names>Jedson Ferreira</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>de Vasconcelos</surname><given-names>Janaina Mota</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>de Oliveira</surname><given-names>Layanna Freitas</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>da Silva</surname><given-names>Sandro Patroca</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>da Silva</surname><given-names>Adriana Marques J.</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Fries</surname><given-names>Brigida Gomes</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Summa</surname><given-names>Maria Eugênia L.</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>de Sá</surname><given-names>Lilian Rose M.</given-names></name><xref ref-type="aff" rid="aff5"><sup>e</sup></xref></contrib><aff id="aff1"><label>a</label><addr-line>Section of Virology, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></aff><aff id="aff2"><label>b</label><addr-line>Section of Hepathology, Evandro Chagas Institute, Molecular Biology Laboratory, Ministry of Health, Belém, Brazil</addr-line></aff><aff id="aff3"><label>c</label><addr-line>Center for Technological Innovation, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil</addr-line></aff><aff id="aff4"><label>d</label><addr-line>Technical Division of Veterinary Medicine and Wildlife Management, Environment and Green Areas Secretary, São Paulo, Brazil</addr-line></aff><aff id="aff5"><label>e</label><addr-line>Department of Pathology, Veterinary Medicine and Animal Science Faculty, São Paulo University, São Paulo, Brazil</addr-line></aff></contrib-group><author-notes><corresp id="cor1">Address correspondence to Edivaldo Costa Sousa Júnior, <email>edivaldojunior@iec.pa.gov.br</email>.</corresp></author-notes><pub-date pub-type="epub"><day>18</day><month>8</month><year>2016</year></pub-date><pub-date pub-type="collection"><season>Jul-Aug</season><year>2016</year></pub-date><volume>4</volume><issue>4</issue><elocation-id>e00725-16</elocation-id><history><date date-type="received"><day>1</day><month>6</month><year>2016</year></date><date date-type="accepted"><day>3</day><month>6</month><year>2016</year></date></history><permissions><copyright-statement>Copyright © 2016 Silvestre et al.</copyright-statement><copyright-year>2016</copyright-year><copyright-holder>Silvestre et al.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International license</ext-link>.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="jga004164137001.pdf"></self-uri><abstract><p>We report here the complete genome sequence of the first papillomavirus detected in a New World primate, howler monkey, <italic>Alouatta guariba clamitans papillomavirus 1</italic> (AgPV1), from the Atlantic Forest in São Paulo State, Brazil.</p></abstract><counts><fig-count count="0"></fig-count><table-count count="0"></table-count><equation-count count="0"></equation-count><ref-count count="10"></ref-count><page-count count="2"></page-count><word-count count="1118"></word-count></counts><custom-meta-group><custom-meta><meta-name>cover-date</meta-name><meta-value>July/August 2016</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="h0.0"><title>GENOME ANNOUNCEMENT</title><p>The <italic>Papillomaviridae</italic> family is composed of 49 genera and 316 virus species distributed in human and other animal hosts (<xref rid="B1" ref-type="bibr">1</xref>, <xref rid="B2" ref-type="bibr">2</xref>). With an icosahedral capsid and a conserved circular double-stranded DNA, papillomaviruses have genomes ranging from 6,953 bp in <italic>Chelonia mydas papillomavirus</italic> type 1 (CmPV1) to 8,607 bp in <italic>Canis familiaris oral papillomavirus</italic> type 1 (CPV1). These viruses contain eight open reading frames (ORF), with the exception of some species that lack the E5 ORF (<xref rid="B1" ref-type="bibr">1</xref>). Primate papillomavirus has been described so far in Old World primates (<xref rid="B3" ref-type="bibr">3</xref><xref ref-type="bibr" rid="B4">–</xref><xref rid="B7" ref-type="bibr">7</xref>), but until then, there was one report of papillomavirus identification and lesion described in a howler monkey without complete genome description (<xref rid="B8" ref-type="bibr">8</xref>) and one incomplete genome description in squirrel monkey (Z. Chen, C. E. Wood, and R. D. Burk, unpublished data). For this reason, this is the first description of papillomavirus detection in New World primates with complete genome annotation.</p><p>We describe here the complete sequencing of the new papillomavirus species that naturally infected a howler monkey, a New World native primate. Howler monkeys (<italic>Alouatta guariba clamitans</italic>) are distributed from the southeastern Brazilian Atlantic Forest to northeastern Argentina (<xref rid="B9" ref-type="bibr">9</xref>) and the species was identified in our study according to morphological features. </p><p>Genomic DNA was obtained from a frozen sample of oral mucosa that was previously suggestive to this infection (<xref rid="B8" ref-type="bibr">8</xref>) using organic solvent extraction, and precipitation was made with ethanol. The DNA mass used for sequencing was 1 µg in the Ion Torrent platform (Life Technologies). The sequencing procedures generated 281,859 reads that were compared to a public data bank of annotated sequences containing 316 papillomavirus complete genomes using the BLAST program (<xref rid="B10" ref-type="bibr">10</xref>). Of the total reads analyzed, 1,049 reads presented similarity to reads in these genomes and were separated, assembled, and ordered by a <italic>de novo</italic> strategy.</p><p>The scaffold generated was about 7.04 kb and was used as reference mapping in the final genome assembly. This cycle of assembly was repeated until the genome was completely assembled. The annotation was performed using the 316 papillomavirus genomes as references, and the functional annotation was done manually.</p><p>Our final result was the assembly of a genome that differs from the closest species, <italic>Saimiri sciureus</italic> (accession no. JF304765), by 30%. The genome is 7,722 bp in length and is arranged in a double strand, with 7 fully identified genes and a G+C content of 59.2%. The new genome identified had a coverage of about 340×, forming a circular unitig containing the complete genome. These observations correspond with a typical papillomavirus genome and, to our knowledge, this is the first description of a papillomavirus detected in oral mucosa of a New World primate and can be used as a reference for further studies of papillomavirus evolution.</p><sec id="s1"><title>Nucleotide sequence accession number.</title><p>This whole-genome shotgun project has been deposited in GenBank under the accession no. <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/nuccore/KP861980">KP861980</ext-link>. The version described in this paper is the first version.</p></sec></sec></body><back><fn-group><fn fn-type="other"><p><bold>Citation</bold> Silvestre RVD, de Souza AJS, Júnior ECS, Silva AK, de Mello WA, Nunes MRT, Júnior JLSGV, Cardoso JF, de Vasconcelos JM, de Oliveira LF, da Silva SP, da Silva AMJ, Fries BG, Summa MEL, de Sá LRM. 2016. First New World primate papillomavirus identification in the Atlantic Forest, Brazil: <italic>Alouatta guariba papillomavirus 1</italic>. 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