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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines<xref ref-type="author-notes" rid="fn1"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[W]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[OPEN]</sup></xref></title><author><name sortKey="Chitwood, Daniel H" sort="Chitwood, Daniel H" uniqKey="Chitwood D" first="Daniel H." last="Chitwood">Daniel H. Chitwood</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Kumar, Ravi" sort="Kumar, Ravi" uniqKey="Kumar R" first="Ravi" last="Kumar">Ravi Kumar</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Headland, Lauren R" sort="Headland, Lauren R" uniqKey="Headland L" first="Lauren R." last="Headland">Lauren R. Headland</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Ranjan, Aashish" sort="Ranjan, Aashish" uniqKey="Ranjan A" first="Aashish" last="Ranjan">Aashish Ranjan</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Covington, Michael F" sort="Covington, Michael F" uniqKey="Covington M" first="Michael F." last="Covington">Michael F. Covington</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Ichihashi, Yasunori" sort="Ichihashi, Yasunori" uniqKey="Ichihashi Y" first="Yasunori" last="Ichihashi">Yasunori Ichihashi</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Fulop, Daniel" sort="Fulop, Daniel" uniqKey="Fulop D" first="Daniel" last="Fulop">Daniel Fulop</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Jimenez G Mez, Jose M" sort="Jimenez G Mez, Jose M" uniqKey="Jimenez G Mez J" first="José M." last="Jiménez-G Mez">José M. Jiménez-G Mez</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Peng, Jie" sort="Peng, Jie" uniqKey="Peng J" first="Jie" last="Peng">Jie Peng</name><affiliation><nlm:aff id="aff2">Department of Statistics, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Maloof, Julin N" sort="Maloof, Julin N" uniqKey="Maloof J" first="Julin N." last="Maloof">Julin N. Maloof</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Sinha, Neelima R" sort="Sinha, Neelima R" uniqKey="Sinha N" first="Neelima R." last="Sinha">Neelima R. Sinha</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23872539</idno><idno type="pmc">3753377</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753377</idno><idno type="RBID">PMC:3753377</idno><idno type="doi">10.1105/tpc.113.112391</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000379</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines<xref ref-type="author-notes" rid="fn1"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[W]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[OPEN]</sup></xref></title><author><name sortKey="Chitwood, Daniel H" sort="Chitwood, Daniel H" uniqKey="Chitwood D" first="Daniel H." last="Chitwood">Daniel H. Chitwood</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Kumar, Ravi" sort="Kumar, Ravi" uniqKey="Kumar R" first="Ravi" last="Kumar">Ravi Kumar</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Headland, Lauren R" sort="Headland, Lauren R" uniqKey="Headland L" first="Lauren R." last="Headland">Lauren R. Headland</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Ranjan, Aashish" sort="Ranjan, Aashish" uniqKey="Ranjan A" first="Aashish" last="Ranjan">Aashish Ranjan</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Covington, Michael F" sort="Covington, Michael F" uniqKey="Covington M" first="Michael F." last="Covington">Michael F. Covington</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Ichihashi, Yasunori" sort="Ichihashi, Yasunori" uniqKey="Ichihashi Y" first="Yasunori" last="Ichihashi">Yasunori Ichihashi</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Fulop, Daniel" sort="Fulop, Daniel" uniqKey="Fulop D" first="Daniel" last="Fulop">Daniel Fulop</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Jimenez G Mez, Jose M" sort="Jimenez G Mez, Jose M" uniqKey="Jimenez G Mez J" first="José M." last="Jiménez-G Mez">José M. Jiménez-G Mez</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Peng, Jie" sort="Peng, Jie" uniqKey="Peng J" first="Jie" last="Peng">Jie Peng</name><affiliation><nlm:aff id="aff2">Department of Statistics, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Maloof, Julin N" sort="Maloof, Julin N" uniqKey="Maloof J" first="Julin N." last="Maloof">Julin N. Maloof</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author><author><name sortKey="Sinha, Neelima R" sort="Sinha, Neelima R" uniqKey="Sinha N" first="Neelima R." last="Sinha">Neelima R. Sinha</name><affiliation><nlm:aff id="aff1">Department of Plant Biology, University of California, Davis, California 95616</nlm:aff></affiliation></author></analytic><series><title level="j">The Plant Cell</title><idno type="ISSN">1040-4651</idno><idno type="eISSN">1532-298X</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Natural variation leading to differences in leaf morphology between domesticated tomato and a wild relative is explored in a set of introgression lines. The phenotypic context of leaf morphology with other traits is examined at the whole-plant level, with implications for organ-specific breeding efforts.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Cell</journal-id><journal-id journal-id-type="iso-abbrev">Plant Cell</journal-id><journal-id journal-id-type="hwp">plantcell</journal-id><journal-id journal-id-type="publisher-id">aspb</journal-id><journal-title-group><journal-title>The Plant Cell</journal-title></journal-title-group><issn pub-type="ppub">1040-4651</issn><issn pub-type="epub">1532-298X</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23872539</article-id><article-id pub-id-type="pmc">3753377</article-id><article-id pub-id-type="publisher-id">112391</article-id><article-id pub-id-type="doi">10.1105/tpc.113.112391</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Articles</subject></subj-group></article-categories><title-group><article-title>A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines<xref ref-type="author-notes" rid="fn1"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[W]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[OPEN]</sup></xref></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Chitwood</surname><given-names>Daniel H.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="author-notes" rid="afn2"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kumar</surname><given-names>Ravi</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="author-notes" rid="afn2"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Headland</surname><given-names>Lauren R.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ranjan</surname><given-names>Aashish</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Covington</surname><given-names>Michael F.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ichihashi</surname><given-names>Yasunori</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Fulop</surname><given-names>Daniel</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Jiménez-Gómez</surname><given-names>José M.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="author-notes" rid="afn3"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Peng</surname><given-names>Jie</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Maloof</surname><given-names>Julin N.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Sinha</surname><given-names>Neelima R.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="corresp" rid="cor1"><sup>3</sup></xref></contrib><aff id="aff1"><label>a</label>Department of Plant Biology, University of California, Davis, California 95616</aff><aff id="aff2"><label>b</label>Department of Statistics, University of California, Davis, California 95616</aff></contrib-group><author-notes><corresp id="cor1"><label>3</label>Address correspondence to <email>nrsinha@ucdavis.edu</email>.</corresp><fn id="afn2" fn-type="equal"><label>1</label><p>These authors contributed equally to this work.</p></fn><fn id="afn3" fn-type="present-address"><label>2</label><p>Current address: Max Planck Institute for Plant Breeding Research Carl-von-Linné-Weg 10 50829 Köln, Germany</p></fn><fn id="afn1"><p>The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (<ext-link ext-link-type="uri" xlink:href="http://www.plantcell.org">www.plantcell.org</ext-link>) is: Neelima R. Sinha (<email>nrsinha@ucdavis.edu</email>).</p></fn><fn id="fn1"><label>[C]</label><p>Some figures in this article are displayed in color online but in black and white in the print edition.</p></fn><fn id="fn2"><label>[W]</label><p>Online version contains Web-only data.</p></fn><fn id="fn3"><label>[OPEN]</label><p>Articles can be viewed online without a subscription.</p></fn><fn><p><ext-link ext-link-type="uri" xlink:href="http://www.plantcell.org/cgi/doi/10.1105/tpc.113.112391">www.plantcell.org/cgi/doi/10.1105/tpc.113.112391</ext-link></p></fn></author-notes><pmc-comment>Fake ppub date generated by PMC from publisher
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<pub-date pub-type="ppub"><month>7</month><year>2013</year></pub-date><pub-date pub-type="epub"><day>19</day><month>7</month><year>2013</year></pub-date><pub-date pub-type="pmc-release"><day>19</day><month>7</month><year>2013</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>25</volume><issue>7</issue><fpage>2465</fpage><lpage>2481</lpage><history><date date-type="received"><day>09</day><month>4</month><year>2013</year></date><date date-type="rev-recd"><day>27</day><month>5</month><year>2013</year></date><date date-type="accepted"><day>05</day><month>7</month><year>2013</year></date></history><permissions><copyright-statement>© 2013 American Society of Plant Biologists. All rights reserved.</copyright-statement><copyright-year>2013</copyright-year><license license-type="open-access"><license-p>Open Access articles can be viewed online without a subscription.</license-p></license></permissions><self-uri xlink:role="icon" xlink:type="simple" xlink:href="PC_112391_ic1.gif"></self-uri><abstract abstract-type="precis"><p>Natural variation leading to differences in leaf morphology between domesticated tomato and a wild relative is explored in a set of introgression lines. The phenotypic context of leaf morphology with other traits is examined at the whole-plant level, with implications for organ-specific breeding efforts.</p></abstract><abstract><p>Introgression lines (<xref ref-type="def" rid="def2">ILs</xref>), in which genetic material from wild tomato species is introgressed into a domesticated background, have been used extensively in tomato (<italic>Solanum lycopersicum</italic>) improvement. Here, we genotype an <xref ref-type="def" rid="def2">IL</xref> population derived from the wild desert tomato <italic>Solanum pennellii</italic> at ultrahigh density, providing the exact gene content harbored by each line. To take advantage of this information, we determine <xref ref-type="def" rid="def2">IL</xref> phenotypes for a suite of vegetative traits, ranging from leaf complexity, shape, and size to cellular traits, such as stomatal density and epidermal cell phenotypes. Elliptical Fourier descriptors on leaflet outlines provide a global analysis of highly heritable, intricate aspects of leaf morphology. We also demonstrate constraints between leaflet size and leaf complexity, pavement cell size, and stomatal density and show independent segregation of traits previously assumed to be genetically coregulated. Meta-analysis of previously measured traits in the <xref ref-type="def" rid="def2">ILs</xref> shows an unexpected relationship between leaf morphology and fruit sugar levels, which RNA-Seq data suggest may be attributable to genetically coregulated changes in fruit morphology or the impact of leaf shape on photosynthesis. Together, our results both improve upon the utility of an important genetic resource and attest to a complex, genetic basis for differences in leaf morphology between natural populations.</p></abstract><counts><page-count count="17"></page-count></counts></article-meta><notes><glossary><title>Glossary</title><def-list><def-item><term id="term1">QTL</term><def id="def1"><p>quantitative trait loci</p></def></def-item><def-item><term id="term2">IL</term><def id="def2"><p>introgression line</p></def></def-item><def-item><term id="term3">SNP</term><def id="def3"><p>Single nucleotide polymorphism</p></def></def-item><def-item><term id="term4">RESCAN</term><def id="def4"><p>restriction enzyme sequence comparative analysis</p></def></def-item><def-item><term id="term5">EFD</term><def id="def5"><p>elliptical Fourier descriptor</p></def></def-item><def-item><term id="term6">AR</term><def id="def6"><p>aspect ratio</p></def></def-item></def-list></glossary></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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