A call for an international network of genomic observatories (GOs)
Identifieur interne : 000447 ( Pmc/Checkpoint ); précédent : 000446; suivant : 000448A call for an international network of genomic observatories (GOs)
Auteurs : Neil Davies [Polynésie française, Royaume-Uni] ; Chris Meyer [États-Unis] ; Jack A. Gilbert [États-Unis] ; Linda Amaral-Zettler [États-Unis] ; John Deck [Polynésie française] ; Mesude Bicak [Royaume-Uni] ; Philippe Rocca-Serra [Royaume-Uni] ; Susanna Assunta-Sansone [Royaume-Uni] ; Kathy Willis [Royaume-Uni] ; Dawn Field [Royaume-Uni]Source :
- GigaScience [ 2047-217X ] ; 2012.
Abstract
We are entering a new era in genomics–that of large-scale, place-based, highly contextualized genomic research. Here we review this emerging paradigm shift and suggest that sites of utmost scientific importance be expanded into ‘Genomic Observatories’ (GOs). Investment in GOs should focus on the digital characterization of whole ecosystems, from all-taxa biotic inventories to time-series ’omics studies. The foundational layer of biodiversity–genetic variation–would thus be mainstreamed into Earth Observation systems enabling predictive modelling of biodiversity dynamics and resultant impacts on ecosystem services.
Url:
DOI: 10.1186/2047-217X-1-5
PubMed: 23587188
PubMed Central: 3617453
Affiliations:
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<front><div type="abstract" xml:lang="en"><p>We are entering a new era in genomics–that of large-scale, place-based, highly contextualized genomic research. Here we review this emerging paradigm shift and suggest that sites of utmost scientific importance be expanded into ‘Genomic Observatories’ (GOs). Investment in GOs should focus on the digital characterization of whole ecosystems, from all-taxa biotic inventories to time-series ’omics studies. The foundational layer of biodiversity–genetic variation–would thus be mainstreamed into Earth Observation systems enabling predictive modelling of biodiversity dynamics and resultant impacts on ecosystem services.</p>
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<pmc article-type="review-article" xml:lang="en"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Gigascience</journal-id>
<journal-id journal-id-type="iso-abbrev">Gigascience</journal-id>
<journal-title-group><journal-title>GigaScience</journal-title>
</journal-title-group>
<issn pub-type="epub">2047-217X</issn>
<publisher><publisher-name>BioMed Central</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">23587188</article-id>
<article-id pub-id-type="pmc">3617453</article-id>
<article-id pub-id-type="publisher-id">2047-217X-1-5</article-id>
<article-id pub-id-type="doi">10.1186/2047-217X-1-5</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Review</subject>
</subj-group>
</article-categories>
<title-group><article-title>A call for an international network of genomic observatories (GOs)</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" id="A1"><name><surname>Davies</surname>
<given-names>Neil</given-names>
</name>
<xref ref-type="aff" rid="I1">1</xref>
<xref ref-type="aff" rid="I2">2</xref>
<email>ndavies@moorea.berkeley.edu</email>
</contrib>
<contrib contrib-type="author" id="A2"><name><surname>Meyer</surname>
<given-names>Chris</given-names>
</name>
<xref ref-type="aff" rid="I3">3</xref>
<email>MeyerC@si.edu</email>
</contrib>
<contrib contrib-type="author" id="A3"><name><surname>Gilbert</surname>
<given-names>Jack A</given-names>
</name>
<xref ref-type="aff" rid="I4">4</xref>
<xref ref-type="aff" rid="I5">5</xref>
<email>gilbertjack@ANL.gov</email>
</contrib>
<contrib contrib-type="author" id="A4"><name><surname>Amaral-Zettler</surname>
<given-names>Linda</given-names>
</name>
<xref ref-type="aff" rid="I6">6</xref>
<email>amaral@mbl.edu</email>
</contrib>
<contrib contrib-type="author" id="A5"><name><surname>Deck</surname>
<given-names>John</given-names>
</name>
<xref ref-type="aff" rid="I1">1</xref>
<email>jdeck@berkeley.edu</email>
</contrib>
<contrib contrib-type="author" id="A6"><name><surname>Bicak</surname>
<given-names>Mesude</given-names>
</name>
<xref ref-type="aff" rid="I7">7</xref>
<email>mbicak@ceh.ac.uk</email>
</contrib>
<contrib contrib-type="author" id="A7"><name><surname>Rocca-Serra</surname>
<given-names>Philippe</given-names>
</name>
<xref ref-type="aff" rid="I8">8</xref>
<email>philippe.rocca-serra@oerc.ox.ac.uk</email>
</contrib>
<contrib contrib-type="author" id="A8"><name><surname>Assunta-Sansone</surname>
<given-names>Susanna</given-names>
</name>
<xref ref-type="aff" rid="I8">8</xref>
<email>susanna-assunta.sansone@oerc.ox.ac.uk</email>
</contrib>
<contrib contrib-type="author" id="A9"><name><surname>Willis</surname>
<given-names>Kathy</given-names>
</name>
<xref ref-type="aff" rid="I2">2</xref>
<email>kathy.willis@ouce.ox.ac.uk</email>
</contrib>
<contrib contrib-type="author" corresp="yes" id="A10"><name><surname>Field</surname>
<given-names>Dawn</given-names>
</name>
<xref ref-type="aff" rid="I2">2</xref>
<xref ref-type="aff" rid="I7">7</xref>
<xref ref-type="aff" rid="I8">8</xref>
<email>dfield@ceh.ac.uk</email>
</contrib>
</contrib-group>
<aff id="I1"><label>1</label>
Gump South Pacific Research Station, University of California Berkeley, BP 244 98728, Moorea, French Polynesia</aff>
<aff id="I2"><label>2</label>
Biodiversity Institute, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK</aff>
<aff id="I3"><label>3</label>
Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, PO Box 37012, MRC-163, Washington, DC, 20013, USA</aff>
<aff id="I4"><label>4</label>
Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL, 60439, USA</aff>
<aff id="I5"><label>5</label>
Department of Ecology and Evolution, University of Chicago, 5640 South Ellis Avenue, Chicago, IL, 60637, USA</aff>
<aff id="I6"><label>6</label>
The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA</aff>
<aff id="I7"><label>7</label>
Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB, UK</aff>
<aff id="I8"><label>8</label>
Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG, UK</aff>
<pub-date pub-type="collection"><year>2012</year>
</pub-date>
<pub-date pub-type="epub"><day>12</day>
<month>7</month>
<year>2012</year>
</pub-date>
<volume>1</volume>
<fpage>5</fpage>
<lpage>5</lpage>
<history><date date-type="received"><day>28</day>
<month>3</month>
<year>2012</year>
</date>
<date date-type="accepted"><day>12</day>
<month>7</month>
<year>2012</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2012 Davies et al; licensee BioMed Central Ltd.</copyright-statement>
<copyright-year>2012</copyright-year>
<copyright-holder>Davies et al; licensee BioMed Central Ltd.</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/2.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/2.0">http://creativecommons.org/licenses/by/2.0</ext-link>
), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.gigasciencejournal.com/content/1/1/5"></self-uri>
<abstract><p>We are entering a new era in genomics–that of large-scale, place-based, highly contextualized genomic research. Here we review this emerging paradigm shift and suggest that sites of utmost scientific importance be expanded into ‘Genomic Observatories’ (GOs). Investment in GOs should focus on the digital characterization of whole ecosystems, from all-taxa biotic inventories to time-series ’omics studies. The foundational layer of biodiversity–genetic variation–would thus be mainstreamed into Earth Observation systems enabling predictive modelling of biodiversity dynamics and resultant impacts on ecosystem services.</p>
</abstract>
<kwd-group><kwd>Ecogenomics</kwd>
<kwd>Earth observation</kwd>
<kwd>Biodiversity</kwd>
<kwd>Ecosystems</kwd>
<kwd>Biocode</kwd>
<kwd>Genomic observatory</kwd>
<kwd>DNA</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Polynésie française</li>
<li>Royaume-Uni</li>
<li>États-Unis</li>
</country>
<region><li>Angleterre</li>
<li>Oxfordshire</li>
</region>
<settlement><li>Oxford</li>
</settlement>
<orgName><li>Université d'Oxford</li>
</orgName>
</list>
<tree><country name="Polynésie française"><noRegion><name sortKey="Davies, Neil" sort="Davies, Neil" uniqKey="Davies N" first="Neil" last="Davies">Neil Davies</name>
</noRegion>
<name sortKey="Deck, John" sort="Deck, John" uniqKey="Deck J" first="John" last="Deck">John Deck</name>
</country>
<country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Davies, Neil" sort="Davies, Neil" uniqKey="Davies N" first="Neil" last="Davies">Neil Davies</name>
</region>
<name sortKey="Assunta Sansone, Susanna" sort="Assunta Sansone, Susanna" uniqKey="Assunta Sansone S" first="Susanna" last="Assunta-Sansone">Susanna Assunta-Sansone</name>
<name sortKey="Bicak, Mesude" sort="Bicak, Mesude" uniqKey="Bicak M" first="Mesude" last="Bicak">Mesude Bicak</name>
<name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name>
<name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name>
<name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name>
<name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<name sortKey="Willis, Kathy" sort="Willis, Kathy" uniqKey="Willis K" first="Kathy" last="Willis">Kathy Willis</name>
</country>
<country name="États-Unis"><noRegion><name sortKey="Meyer, Chris" sort="Meyer, Chris" uniqKey="Meyer C" first="Chris" last="Meyer">Chris Meyer</name>
</noRegion>
<name sortKey="Amaral Zettler, Linda" sort="Amaral Zettler, Linda" uniqKey="Amaral Zettler L" first="Linda" last="Amaral-Zettler">Linda Amaral-Zettler</name>
<name sortKey="Gilbert, Jack A" sort="Gilbert, Jack A" uniqKey="Gilbert J" first="Jack A" last="Gilbert">Jack A. Gilbert</name>
<name sortKey="Gilbert, Jack A" sort="Gilbert, Jack A" uniqKey="Gilbert J" first="Jack A" last="Gilbert">Jack A. Gilbert</name>
</country>
</tree>
</affiliations>
</record>
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