Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
Identifieur interne : 000442 ( Ncbi/Curation ); précédent : 000441; suivant : 000443Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
Auteurs : Erin D. Scully [États-Unis] ; Scott M. Geib [États-Unis] ; Kelli Hoover [États-Unis] ; Ming Tien [États-Unis] ; Susannah G. Tringe [États-Unis] ; Kerrie W. Barry [États-Unis] ; Tijana Glavina Del Rio [États-Unis] ; Mansi Chovatia [États-Unis] ; Joshua R. Herr [États-Unis] ; John E. Carlson [États-Unis, Corée du Sud]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
The Asian longhorned beetle (
Url:
DOI: 10.1371/journal.pone.0073827
PubMed: 24023907
PubMed Central: 3762729
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<author><name sortKey="Herr, Joshua R" sort="Herr, Joshua R" uniqKey="Herr J" first="Joshua R." last="Herr">Joshua R. Herr</name>
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<wicri:regionArea>Intercollege Graduate Program in Plant Biology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania</wicri:regionArea>
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<author><name sortKey="Carlson, John E" sort="Carlson, John E" uniqKey="Carlson J" first="John E." last="Carlson">John E. Carlson</name>
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<wicri:regionArea>The Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, Pennsylvania</wicri:regionArea>
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</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Department of Bioenergy Science and Technology, Chonnam National University, Gwangju</wicri:regionArea>
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<front><div type="abstract" xml:lang="en"><p>The Asian longhorned beetle (<named-content content-type="genus-species"><named-content content-type="genus-species"><named-content content-type="genus">Anoplophora</named-content>
<named-content content-type="species">glabripennis</named-content>
</named-content>
</named-content>
) is an invasive, wood-boring pest that thrives in the heartwood of deciduous tree species. A large impediment faced by <named-content content-type="genus-species"><named-content content-type="genus">A</named-content>
<italic>. <named-content content-type="species">glabripennis</named-content>
</italic>
</named-content>
as it feeds on woody tissue is lignin, a highly recalcitrant biopolymer that reduces access to sugars and other nutrients locked in cellulose and hemicellulose. We previously demonstrated that lignin, cellulose, and hemicellulose are actively deconstructed in the beetle gut and that the gut harbors an assemblage of microbes hypothesized to make significant contributions to these processes. While lignin degrading mechanisms have been well characterized in pure cultures of white rot basidiomycetes, little is known about such processes in microbial communities associated with wood-feeding insects. The goals of this study were to develop a taxonomic and functional profile of a gut community derived from an invasive population of larval <named-content content-type="genus-species"><named-content content-type="genus">A</named-content>
<italic>. <named-content content-type="species">glabripennis</named-content>
</italic>
</named-content>
collected from infested host trees and to identify genes that could be relevant for the digestion of woody tissue and nutrient acquisition. To accomplish this goal, we taxonomically and functionally characterized the <named-content content-type="genus-species"><named-content content-type="genus">A</named-content>
<italic>. <named-content content-type="species">glabripennis</named-content>
</italic>
</named-content>
midgut microbiota through amplicon and shotgun metagenome sequencing and conducted a large-scale comparison with the metagenomes from a variety of other herbivore-associated communities. This analysis distinguished the <italic>A</italic>
. <italic>glabripennis</italic>
larval gut metagenome from the gut communities of other herbivores, including previously sequenced termite hindgut metagenomes. Genes encoding enzymes were identified in the <named-content content-type="genus-species"><named-content content-type="genus">A</named-content>
<italic>. <named-content content-type="species">glabripennis</named-content>
</italic>
</named-content>
gut metagenome that could have key roles in woody tissue digestion including candidate lignin degrading genes (laccases, dye-decolorizing peroxidases, novel peroxidases and β-etherases), 36 families of glycoside hydrolases (such as cellulases and xylanases), and genes that could facilitate nutrient recovery, essential nutrient synthesis, and detoxification. This community could serve as a reservoir of novel enzymes to enhance industrial cellulosic biofuels production or targets for novel control methods for this invasive and highly destructive insect.</p>
</div>
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