De Novo Assembly and Comparative Transcriptome Analyses of Red and Green Morphs of Sweet Basil Grown in Full Sunlight
Identifieur interne : 000053 ( Main/Exploration ); précédent : 000052; suivant : 000054De Novo Assembly and Comparative Transcriptome Analyses of Red and Green Morphs of Sweet Basil Grown in Full Sunlight
Auteurs : Sara Torre [Italie] ; Massimiliano Tattini [Italie] ; Cecilia Brunetti [Italie] ; Lucia Guidi [Italie] ; Antonella Gori [Italie] ; Cristina Marzano [Italie] ; Marco Landi [Italie] ; Federico Sebastiani [Italie]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
Sweet basil (
Url:
DOI: 10.1371/journal.pone.0160370
PubMed: 27483170
PubMed Central: 4970699
Affiliations:
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Le document en format XML
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Assembly and Comparative Transcriptome Analyses of Red and Green Morphs of Sweet Basil Grown in Full Sunlight</title>
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Assembly and Comparative Transcriptome Analyses of Red and Green Morphs of Sweet Basil Grown in Full Sunlight</title>
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<front><div type="abstract" xml:lang="en"><p>Sweet basil (<italic>Ocimum basilicum</italic>
), one of the most popular cultivated herbs worldwide, displays a number of varieties differing in several characteristics, such as the color of the leaves. The development of a reference transcriptome for sweet basil, and the analysis of differentially expressed genes in acyanic and cyanic cultivars exposed to natural sunlight irradiance, has interest from horticultural and biological point of views. There is still great uncertainty about the significance of anthocyanins in photoprotection, and how green and red morphs may perform when exposed to photo-inhibitory light, a condition plants face on daily and seasonal basis. We sequenced the leaf transcriptome of the green-leaved Tigullio (TIG) and the purple-leaved Red Rubin (RR) exposed to full sunlight over a four-week experimental period. We assembled and annotated 111,007 transcripts. A total of 5,468 and 5,969 potential SSRs were identified in TIG and RR, respectively, out of which 66 were polymorphic <italic>in silico</italic>
. Comparative analysis of the two transcriptomes showed 2,372 differentially expressed genes (DEGs) clustered in 222 enriched Gene ontology terms. Green and red basil mostly differed for transcripts abundance of genes involved in secondary metabolism. While the biosynthesis of waxes was up-regulated in red basil, the biosynthesis of flavonols and carotenoids was up-regulated in green basil. Data from our study provides a comprehensive transcriptome survey, gene sequence resources and microsatellites that can be used for further investigations in sweet basil. The analysis of DEGs and their functional classification also offers new insights on the functional role of anthocyanins in photoprotection.</p>
</div>
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<name sortKey="Guidi, Lucia" sort="Guidi, Lucia" uniqKey="Guidi L" first="Lucia" last="Guidi">Lucia Guidi</name>
<name sortKey="Landi, Marco" sort="Landi, Marco" uniqKey="Landi M" first="Marco" last="Landi">Marco Landi</name>
<name sortKey="Marzano, Cristina" sort="Marzano, Cristina" uniqKey="Marzano C" first="Cristina" last="Marzano">Cristina Marzano</name>
<name sortKey="Sebastiani, Federico" sort="Sebastiani, Federico" uniqKey="Sebastiani F" first="Federico" last="Sebastiani">Federico Sebastiani</name>
<name sortKey="Tattini, Massimiliano" sort="Tattini, Massimiliano" uniqKey="Tattini M" first="Massimiliano" last="Tattini">Massimiliano Tattini</name>
</country>
</tree>
</affiliations>
</record>
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