Serveur d'exploration Cyberinfrastructure

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

A natural deletion of the HoxC cluster in elasmobranch fishes*

Identifieur interne : 000720 ( Main/Exploration ); précédent : 000719; suivant : 000721

A natural deletion of the HoxC cluster in elasmobranch fishes*

Auteurs : Benjamin L. King [États-Unis] ; J. Andrew Gillis [Royaume-Uni] ; Heather R. Carlisle [États-Unis] ; Randall D. Dahn [États-Unis]

Source :

RBID : PMC:3264428

Abstract

Hox proteins are a metazoan-specific family of transcription factors that are required for developmental patterning. The genomic arrangement of Hox genes into four paralogous clusters is a primitive feature of jawed vertebrates. Using high-throughput sequencing, we demonstrate the absence of all HoxC transcripts from embryos of the shark, Scyliorhinus canicula, and the skate, Leucoraja erinacea, and the absence of all HoxC genes and two HoxC-associated miRNAs from the genome of L. erinacea. These data suggest a loss of the entire HoxC cluster in elasmobranch fishes, and represent the evidence for natural deletion of an entire Hox cluster in vertebrates.


Url:
DOI: 10.1126/science.1210912
PubMed: 22174244
PubMed Central: 3264428


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">A natural deletion of the
<italic>HoxC</italic>
cluster in elasmobranch fishes
<xref ref-type="fn" rid="FN2">*</xref>
</title>
<author>
<name sortKey="King, Benjamin L" sort="King, Benjamin L" uniqKey="King B" first="Benjamin L." last="King">Benjamin L. King</name>
<affiliation wicri:level="2">
<nlm:aff id="A1">Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672</wicri:regionArea>
<placeName>
<region type="state">Maine (État)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Gillis, J Andrew" sort="Gillis, J Andrew" uniqKey="Gillis J" first="J. Andrew" last="Gillis">J. Andrew Gillis</name>
<affiliation wicri:level="4">
<nlm:aff id="A2">Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, CB2 3DY, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, CB2 3DY</wicri:regionArea>
<orgName type="university">Université de Cambridge</orgName>
<placeName>
<settlement type="city">Cambridge</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Angleterre de l'Est</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Carlisle, Heather R" sort="Carlisle, Heather R" uniqKey="Carlisle H" first="Heather R." last="Carlisle">Heather R. Carlisle</name>
<affiliation wicri:level="2">
<nlm:aff id="A1">Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672</wicri:regionArea>
<placeName>
<region type="state">Maine (État)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Dahn, Randall D" sort="Dahn, Randall D" uniqKey="Dahn R" first="Randall D." last="Dahn">Randall D. Dahn</name>
<affiliation wicri:level="2">
<nlm:aff id="A1">Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672</wicri:regionArea>
<placeName>
<region type="state">Maine (État)</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">22174244</idno>
<idno type="pmc">3264428</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3264428</idno>
<idno type="RBID">PMC:3264428</idno>
<idno type="doi">10.1126/science.1210912</idno>
<date when="2011">2011</date>
<idno type="wicri:Area/Pmc/Corpus">000315</idno>
<idno type="wicri:Area/Pmc/Curation">000315</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000530</idno>
<idno type="wicri:Area/Ncbi/Merge">000275</idno>
<idno type="wicri:Area/Ncbi/Curation">000275</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000275</idno>
<idno type="wicri:doubleKey">0036-8075:2011:King B:a:natural:deletion</idno>
<idno type="wicri:Area/Main/Merge">000722</idno>
<idno type="wicri:Area/Main/Curation">000720</idno>
<idno type="wicri:Area/Main/Exploration">000720</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">A natural deletion of the
<italic>HoxC</italic>
cluster in elasmobranch fishes
<xref ref-type="fn" rid="FN2">*</xref>
</title>
<author>
<name sortKey="King, Benjamin L" sort="King, Benjamin L" uniqKey="King B" first="Benjamin L." last="King">Benjamin L. King</name>
<affiliation wicri:level="2">
<nlm:aff id="A1">Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672</wicri:regionArea>
<placeName>
<region type="state">Maine (État)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Gillis, J Andrew" sort="Gillis, J Andrew" uniqKey="Gillis J" first="J. Andrew" last="Gillis">J. Andrew Gillis</name>
<affiliation wicri:level="4">
<nlm:aff id="A2">Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, CB2 3DY, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, CB2 3DY</wicri:regionArea>
<orgName type="university">Université de Cambridge</orgName>
<placeName>
<settlement type="city">Cambridge</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Angleterre de l'Est</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Carlisle, Heather R" sort="Carlisle, Heather R" uniqKey="Carlisle H" first="Heather R." last="Carlisle">Heather R. Carlisle</name>
<affiliation wicri:level="2">
<nlm:aff id="A1">Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672</wicri:regionArea>
<placeName>
<region type="state">Maine (État)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Dahn, Randall D" sort="Dahn, Randall D" uniqKey="Dahn R" first="Randall D." last="Dahn">Randall D. Dahn</name>
<affiliation wicri:level="2">
<nlm:aff id="A1">Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Kathryn W. Davis Center for Regenerative Biology and Medicine, Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672</wicri:regionArea>
<placeName>
<region type="state">Maine (État)</region>
</placeName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Science (New York, N.y.)</title>
<idno type="ISSN">0036-8075</idno>
<idno type="eISSN">1095-9203</idno>
<imprint>
<date when="2011">2011</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p id="P2">Hox proteins are a metazoan-specific family of transcription factors that are required for developmental patterning. The genomic arrangement of
<italic>Hox</italic>
genes into four paralogous clusters is a primitive feature of jawed vertebrates. Using high-throughput sequencing, we demonstrate the absence of all
<italic>HoxC</italic>
transcripts from embryos of the shark,
<italic>Scyliorhinus canicula</italic>
, and the skate,
<italic>Leucoraja erinacea</italic>
, and the absence of all
<italic>HoxC</italic>
genes and two
<italic>HoxC</italic>
-associated miRNAs from the genome of
<italic>L. erinacea</italic>
. These data suggest a loss of the entire
<italic>HoxC</italic>
cluster in elasmobranch fishes, and represent the evidence for natural deletion of an entire
<italic>Hox</italic>
cluster in vertebrates.</p>
</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Royaume-Uni</li>
<li>États-Unis</li>
</country>
<region>
<li>Angleterre</li>
<li>Angleterre de l'Est</li>
<li>Maine (État)</li>
</region>
<settlement>
<li>Cambridge</li>
</settlement>
<orgName>
<li>Université de Cambridge</li>
</orgName>
</list>
<tree>
<country name="États-Unis">
<region name="Maine (État)">
<name sortKey="King, Benjamin L" sort="King, Benjamin L" uniqKey="King B" first="Benjamin L." last="King">Benjamin L. King</name>
</region>
<name sortKey="Carlisle, Heather R" sort="Carlisle, Heather R" uniqKey="Carlisle H" first="Heather R." last="Carlisle">Heather R. Carlisle</name>
<name sortKey="Dahn, Randall D" sort="Dahn, Randall D" uniqKey="Dahn R" first="Randall D." last="Dahn">Randall D. Dahn</name>
</country>
<country name="Royaume-Uni">
<region name="Angleterre">
<name sortKey="Gillis, J Andrew" sort="Gillis, J Andrew" uniqKey="Gillis J" first="J. Andrew" last="Gillis">J. Andrew Gillis</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000720 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000720 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:3264428
   |texte=   A natural deletion of the HoxC cluster in elasmobranch fishes*
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:22174244" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1 

Wicri

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024