Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics
Identifieur interne : 000134 ( Main/Curation ); précédent : 000133; suivant : 000135Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics
Auteurs : Tomàs Llorens-Marès [Espagne] ; Shibu Yooseph [États-Unis] ; Johannes Goll [États-Unis] ; Jeff Hoffman [États-Unis] ; Maria Vila-Costa [Espagne] ; Carles M. Borrego [Espagne] ; Chris L. Dupont [États-Unis] ; Emilio O. Casamayor [Espagne]Source :
- The ISME Journal [ 1751-7362 ] ; 2015.
Abstract
Stratified sulfurous lakes are appropriate environments for studying the links between composition and functionality in microbial communities and are potentially modern analogs of anoxic conditions prevailing in the ancient ocean. We explored these aspects in the Lake Banyoles karstic area (NE Spain) through metagenomics and
Url:
DOI: 10.1038/ismej.2014.254
PubMed: 25575307
PubMed Central: 4478705
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PMC:4478705Le document en format XML
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<author><name sortKey="Casamayor, Emilio O" sort="Casamayor, Emilio O" uniqKey="Casamayor E" first="Emilio O" last="Casamayor">Emilio O. Casamayor</name>
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<series><title level="j">The ISME Journal</title>
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<front><div type="abstract" xml:lang="en"><p>Stratified sulfurous lakes are appropriate environments for studying the links between composition and functionality in microbial communities and are potentially modern analogs of anoxic conditions prevailing in the ancient ocean. We explored these aspects in the Lake Banyoles karstic area (NE Spain) through metagenomics and <italic>in silico</italic>
reconstruction of carbon, nitrogen and sulfur metabolic pathways that were tightly coupled through a few bacterial groups. The potential for nitrogen fixation and denitrification was detected in both autotrophs and heterotrophs, with a major role for nitrogen and carbon fixations in <italic>Chlorobiaceae</italic>
. <italic>Campylobacterales</italic>
accounted for a large percentage of denitrification genes, while <italic>Gallionellales</italic>
were putatively involved in denitrification, iron oxidation and carbon fixation and may have a major role in the biogeochemistry of the iron cycle. <italic>Bacteroidales</italic>
were also abundant and showed potential for dissimilatory nitrate reduction to ammonium. The very low abundance of genes for nitrification, the minor presence of anammox genes, the high potential for nitrogen fixation and mineralization and the potential for chemotrophic CO<sub>2</sub>
fixation and CO oxidation all provide potential clues on the anoxic zones functioning. We observed higher gene abundance of ammonia-oxidizing bacteria than ammonia-oxidizing archaea that may have a geochemical and evolutionary link related to the dominance of Fe in these environments. Overall, these results offer a more detailed perspective on the microbial ecology of anoxic environments and may help to develop new geochemical proxies to infer biology and chemistry interactions in ancient ecosystems.</p>
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