Highly pathogenic avian influenza virus subtype H5N1 in Africa: a comprehensive phylogenetic analysis and molecular characterization of isolates.
Identifieur interne : 000727 ( PubMed/Checkpoint ); précédent : 000726; suivant : 000728Highly pathogenic avian influenza virus subtype H5N1 in Africa: a comprehensive phylogenetic analysis and molecular characterization of isolates.
Auteurs : Giovanni Cattoli [Italie] ; Isabella Monne ; Alice Fusaro ; Tony M. Joannis ; Lami H. Lombin ; Mona M. Aly ; Abdel S. Arafa ; Katharine M. Sturm-Ramirez ; Emmanuel Couacy-Hymann ; Joseph A. Awuni ; Komla B. Batawui ; Kodzo A. Awoume ; Gilbert L. Aplogan ; Adama Sow ; Andrè C. Ngangnou ; Iman M. El Nasri Hamza ; Djibo Gamatié ; Gwenaelle Dauphin ; Joseph M. Domenech ; Ilaria CapuaSource :
- PloS one [ 1932-6203 ] ; 2009.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- geographic : Africa.
- classification : Influenza A Virus, H5N1 Subtype.
- genetics : Influenza A Virus, H5N1 Subtype.
- pathogenicity : Influenza A Virus, H5N1 Subtype.
- Bayes Theorem, Evolution, Molecular, Mutation, Phylogeny.
Abstract
Highly pathogenic avian influenza virus A/H5N1 was first officially reported in Africa in early 2006. Since the first outbreak in Nigeria, this virus spread rapidly to other African countries. From its emergence to early 2008, 11 African countries experienced A/H5N1 outbreaks in poultry and human cases were also reported in three of these countries. At present, little is known of the epidemiology and molecular evolution of A/H5N1 viruses in Africa. We have generated 494 full gene sequences from 67 African isolates and applied molecular analysis tools to a total of 1,152 A/H5N1 sequences obtained from viruses isolated in Africa, Europe and the Middle East between 2006 and early 2008. Detailed phylogenetic analyses of the 8 gene viral segments confirmed that 3 distinct sublineages were introduced, which have persisted and spread across the continent over this 2-year period. Additionally, our molecular epidemiological studies highlighted the association between genetic clustering and area of origin in a majority of cases. Molecular signatures unique to strains isolated in selected areas also gave us a clearer picture of the spread of A/H5N1 viruses across the continent. Mutations described as typical of human influenza viruses in the genes coding for internal proteins or associated with host adaptation and increased resistance to antiviral drugs have also been detected in the genes coding for transmembrane proteins. These findings raise concern for the possible human health risk presented by viruses with these genetic properties and highlight the need for increased efforts to monitor the evolution of A/H5N1 viruses across the African continent. They further stress how imperative it is to implement sustainable control strategies to improve animal and public health at a global level.
DOI: 10.1371/journal.pone.0004842
PubMed: 19290041
Affiliations:
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Joannis</name></author><author><name sortKey="Lombin, Lami H" sort="Lombin, Lami H" uniqKey="Lombin L" first="Lami H" last="Lombin">Lami H. Lombin</name></author><author><name sortKey="Aly, Mona M" sort="Aly, Mona M" uniqKey="Aly M" first="Mona M" last="Aly">Mona M. Aly</name></author><author><name sortKey="Arafa, Abdel S" sort="Arafa, Abdel S" uniqKey="Arafa A" first="Abdel S" last="Arafa">Abdel S. Arafa</name></author><author><name sortKey="Sturm Ramirez, Katharine M" sort="Sturm Ramirez, Katharine M" uniqKey="Sturm Ramirez K" first="Katharine M" last="Sturm-Ramirez">Katharine M. Sturm-Ramirez</name></author><author><name sortKey="Couacy Hymann, Emmanuel" sort="Couacy Hymann, Emmanuel" uniqKey="Couacy Hymann E" first="Emmanuel" last="Couacy-Hymann">Emmanuel Couacy-Hymann</name></author><author><name sortKey="Awuni, Joseph A" sort="Awuni, Joseph A" uniqKey="Awuni J" first="Joseph A" last="Awuni">Joseph A. Awuni</name></author><author><name sortKey="Batawui, Komla B" sort="Batawui, Komla B" uniqKey="Batawui K" first="Komla B" last="Batawui">Komla B. Batawui</name></author><author><name sortKey="Awoume, Kodzo A" sort="Awoume, Kodzo A" uniqKey="Awoume K" first="Kodzo A" last="Awoume">Kodzo A. Awoume</name></author><author><name sortKey="Aplogan, Gilbert L" sort="Aplogan, Gilbert L" uniqKey="Aplogan G" first="Gilbert L" last="Aplogan">Gilbert L. Aplogan</name></author><author><name sortKey="Sow, Adama" sort="Sow, Adama" uniqKey="Sow A" first="Adama" last="Sow">Adama Sow</name></author><author><name sortKey="Ngangnou, Andre C" sort="Ngangnou, Andre C" uniqKey="Ngangnou A" first="Andrè C" last="Ngangnou">Andrè C. Ngangnou</name></author><author><name sortKey="El Nasri Hamza, Iman M" sort="El Nasri Hamza, Iman M" uniqKey="El Nasri Hamza I" first="Iman M" last="El Nasri Hamza">Iman M. El Nasri Hamza</name></author><author><name sortKey="Gamatie, Djibo" sort="Gamatie, Djibo" uniqKey="Gamatie D" first="Djibo" last="Gamatié">Djibo Gamatié</name></author><author><name sortKey="Dauphin, Gwenaelle" sort="Dauphin, Gwenaelle" uniqKey="Dauphin G" first="Gwenaelle" last="Dauphin">Gwenaelle Dauphin</name></author><author><name sortKey="Domenech, Joseph M" sort="Domenech, Joseph M" uniqKey="Domenech J" first="Joseph M" last="Domenech">Joseph M. Domenech</name></author><author><name sortKey="Capua, Ilaria" sort="Capua, Ilaria" uniqKey="Capua I" first="Ilaria" last="Capua">Ilaria Capua</name></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Africa</term><term>Bayes Theorem</term><term>Evolution, Molecular</term><term>Influenza A Virus, H5N1 Subtype (classification)</term><term>Influenza A Virus, H5N1 Subtype (genetics)</term><term>Influenza A Virus, H5N1 Subtype (pathogenicity)</term><term>Mutation</term><term>Phylogeny</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Afrique</term><term>Mutation</term><term>Phylogénie</term><term>Sous-type H5N1 du virus de la grippe A ()</term><term>Sous-type H5N1 du virus de la grippe A (génétique)</term><term>Sous-type H5N1 du virus de la grippe A (pathogénicité)</term><term>Théorème de Bayes</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Africa</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bayes Theorem</term><term>Evolution, Molecular</term><term>Mutation</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Afrique</term><term>Mutation</term><term>Phylogénie</term><term>Sous-type H5N1 du virus de la grippe A</term><term>Théorème de Bayes</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Highly pathogenic avian influenza virus A/H5N1 was first officially reported in Africa in early 2006. Since the first outbreak in Nigeria, this virus spread rapidly to other African countries. From its emergence to early 2008, 11 African countries experienced A/H5N1 outbreaks in poultry and human cases were also reported in three of these countries. At present, little is known of the epidemiology and molecular evolution of A/H5N1 viruses in Africa. We have generated 494 full gene sequences from 67 African isolates and applied molecular analysis tools to a total of 1,152 A/H5N1 sequences obtained from viruses isolated in Africa, Europe and the Middle East between 2006 and early 2008. Detailed phylogenetic analyses of the 8 gene viral segments confirmed that 3 distinct sublineages were introduced, which have persisted and spread across the continent over this 2-year period. Additionally, our molecular epidemiological studies highlighted the association between genetic clustering and area of origin in a majority of cases. Molecular signatures unique to strains isolated in selected areas also gave us a clearer picture of the spread of A/H5N1 viruses across the continent. Mutations described as typical of human influenza viruses in the genes coding for internal proteins or associated with host adaptation and increased resistance to antiviral drugs have also been detected in the genes coding for transmembrane proteins. These findings raise concern for the possible human health risk presented by viruses with these genetic properties and highlight the need for increased efforts to monitor the evolution of A/H5N1 viruses across the African continent. They further stress how imperative it is to implement sustainable control strategies to improve animal and public health at a global level.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19290041</PMID><DateCompleted><Year>2009</Year><Month>05</Month><Day>28</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>4</Volume><Issue>3</Issue><PubDate><Year>2009</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>Highly pathogenic avian influenza virus subtype H5N1 in Africa: a comprehensive phylogenetic analysis and molecular characterization of isolates.</ArticleTitle><Pagination><MedlinePgn>e4842</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0004842</ELocationID><Abstract><AbstractText>Highly pathogenic avian influenza virus A/H5N1 was first officially reported in Africa in early 2006. Since the first outbreak in Nigeria, this virus spread rapidly to other African countries. From its emergence to early 2008, 11 African countries experienced A/H5N1 outbreaks in poultry and human cases were also reported in three of these countries. At present, little is known of the epidemiology and molecular evolution of A/H5N1 viruses in Africa. We have generated 494 full gene sequences from 67 African isolates and applied molecular analysis tools to a total of 1,152 A/H5N1 sequences obtained from viruses isolated in Africa, Europe and the Middle East between 2006 and early 2008. Detailed phylogenetic analyses of the 8 gene viral segments confirmed that 3 distinct sublineages were introduced, which have persisted and spread across the continent over this 2-year period. Additionally, our molecular epidemiological studies highlighted the association between genetic clustering and area of origin in a majority of cases. Molecular signatures unique to strains isolated in selected areas also gave us a clearer picture of the spread of A/H5N1 viruses across the continent. Mutations described as typical of human influenza viruses in the genes coding for internal proteins or associated with host adaptation and increased resistance to antiviral drugs have also been detected in the genes coding for transmembrane proteins. These findings raise concern for the possible human health risk presented by viruses with these genetic properties and highlight the need for increased efforts to monitor the evolution of A/H5N1 viruses across the African continent. They further stress how imperative it is to implement sustainable control strategies to improve animal and public health at a global level.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cattoli</LastName><ForeName>Giovanni</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>OIE/FAO Reference Laboratory for avian influenza and Newcastle disease, Istituto Zooprofilattico Sper.le delle Venezie, Legnaro, PD, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Monne</LastName><ForeName>Isabella</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Fusaro</LastName><ForeName>Alice</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Joannis</LastName><ForeName>Tony M</ForeName><Initials>TM</Initials></Author><Author ValidYN="Y"><LastName>Lombin</LastName><ForeName>Lami H</ForeName><Initials>LH</Initials></Author><Author ValidYN="Y"><LastName>Aly</LastName><ForeName>Mona M</ForeName><Initials>MM</Initials></Author><Author ValidYN="Y"><LastName>Arafa</LastName><ForeName>Abdel S</ForeName><Initials>AS</Initials></Author><Author ValidYN="Y"><LastName>Sturm-Ramirez</LastName><ForeName>Katharine M</ForeName><Initials>KM</Initials></Author><Author ValidYN="Y"><LastName>Couacy-Hymann</LastName><ForeName>Emmanuel</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Awuni</LastName><ForeName>Joseph A</ForeName><Initials>JA</Initials></Author><Author ValidYN="Y"><LastName>Batawui</LastName><ForeName>Komla B</ForeName><Initials>KB</Initials></Author><Author ValidYN="Y"><LastName>Awoume</LastName><ForeName>Kodzo A</ForeName><Initials>KA</Initials></Author><Author ValidYN="Y"><LastName>Aplogan</LastName><ForeName>Gilbert L</ForeName><Initials>GL</Initials></Author><Author ValidYN="Y"><LastName>Sow</LastName><ForeName>Adama</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Ngangnou</LastName><ForeName>Andrè C</ForeName><Initials>AC</Initials></Author><Author ValidYN="Y"><LastName>El Nasri Hamza</LastName><ForeName>Iman M</ForeName><Initials>IM</Initials></Author><Author ValidYN="Y"><LastName>Gamatié</LastName><ForeName>Djibo</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Dauphin</LastName><ForeName>Gwenaelle</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Domenech</LastName><ForeName>Joseph M</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Capua</LastName><ForeName>Ilaria</ForeName><Initials>I</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2009</Year><Month>03</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000349" MajorTopicYN="N" Type="Geographic">Africa</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001499" MajorTopicYN="N">Bayes Theorem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053124" MajorTopicYN="N">Influenza A Virus, H5N1 Subtype</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009154" MajorTopicYN="N">Mutation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" 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Aly</name><name sortKey="Aplogan, Gilbert L" sort="Aplogan, Gilbert L" uniqKey="Aplogan G" first="Gilbert L" last="Aplogan">Gilbert L. Aplogan</name><name sortKey="Arafa, Abdel S" sort="Arafa, Abdel S" uniqKey="Arafa A" first="Abdel S" last="Arafa">Abdel S. Arafa</name><name sortKey="Awoume, Kodzo A" sort="Awoume, Kodzo A" uniqKey="Awoume K" first="Kodzo A" last="Awoume">Kodzo A. Awoume</name><name sortKey="Awuni, Joseph A" sort="Awuni, Joseph A" uniqKey="Awuni J" first="Joseph A" last="Awuni">Joseph A. Awuni</name><name sortKey="Batawui, Komla B" sort="Batawui, Komla B" uniqKey="Batawui K" first="Komla B" last="Batawui">Komla B. Batawui</name><name sortKey="Capua, Ilaria" sort="Capua, Ilaria" uniqKey="Capua I" first="Ilaria" last="Capua">Ilaria Capua</name><name sortKey="Couacy Hymann, Emmanuel" sort="Couacy Hymann, Emmanuel" uniqKey="Couacy Hymann E" first="Emmanuel" last="Couacy-Hymann">Emmanuel Couacy-Hymann</name><name sortKey="Dauphin, Gwenaelle" sort="Dauphin, Gwenaelle" uniqKey="Dauphin G" first="Gwenaelle" last="Dauphin">Gwenaelle Dauphin</name><name sortKey="Domenech, Joseph M" sort="Domenech, Joseph M" uniqKey="Domenech J" first="Joseph M" last="Domenech">Joseph M. Domenech</name><name sortKey="El Nasri Hamza, Iman M" sort="El Nasri Hamza, Iman M" uniqKey="El Nasri Hamza I" first="Iman M" last="El Nasri Hamza">Iman M. El Nasri Hamza</name><name sortKey="Fusaro, Alice" sort="Fusaro, Alice" uniqKey="Fusaro A" first="Alice" last="Fusaro">Alice Fusaro</name><name sortKey="Gamatie, Djibo" sort="Gamatie, Djibo" uniqKey="Gamatie D" first="Djibo" last="Gamatié">Djibo Gamatié</name><name sortKey="Joannis, Tony M" sort="Joannis, Tony M" uniqKey="Joannis T" first="Tony M" last="Joannis">Tony M. Joannis</name><name sortKey="Lombin, Lami H" sort="Lombin, Lami H" uniqKey="Lombin L" first="Lami H" last="Lombin">Lami H. Lombin</name><name sortKey="Monne, Isabella" sort="Monne, Isabella" uniqKey="Monne I" first="Isabella" last="Monne">Isabella Monne</name><name sortKey="Ngangnou, Andre C" sort="Ngangnou, Andre C" uniqKey="Ngangnou A" first="Andrè C" last="Ngangnou">Andrè C. Ngangnou</name><name sortKey="Sow, Adama" sort="Sow, Adama" uniqKey="Sow A" first="Adama" last="Sow">Adama Sow</name><name sortKey="Sturm Ramirez, Katharine M" sort="Sturm Ramirez, Katharine M" uniqKey="Sturm Ramirez K" first="Katharine M" last="Sturm-Ramirez">Katharine M. Sturm-Ramirez</name></noCountry><country name="Italie"><noRegion><name sortKey="Cattoli, Giovanni" sort="Cattoli, Giovanni" uniqKey="Cattoli G" first="Giovanni" last="Cattoli">Giovanni Cattoli</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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