Characterizing 56 complete SARS-CoV S-gene sequences from Hong Kong.
Identifieur interne : 001F82 ( PubMed/Curation ); précédent : 001F81; suivant : 001F83Characterizing 56 complete SARS-CoV S-gene sequences from Hong Kong.
Auteurs : Julian W. Tang [République populaire de Chine] ; Jo L K. Cheung ; Ida M T. Chu ; Margaret Ip ; Mamie Hui ; Malik Peiris ; Paul K S. ChanSource :
- Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology [ 1386-6532 ] ; 2007.
Descripteurs français
- KwdFr :
- Données de séquences moléculaires, Famille multigénique, Femelle, Flambées de maladies, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires (génétique), Gènes viraux (génétique), Hong Kong (épidémiologie), Humains, Mâle, Protéines de l'enveloppe virale (génétique), Syndrome respiratoire aigu sévère (épidémiologie), Variation génétique, Virus du SRAS (génétique), Épidémiologie moléculaire, Évolution moléculaire.
- MESH :
- génétique : Glycoprotéines membranaires, Gènes viraux, Protéines de l'enveloppe virale, Virus du SRAS.
- épidémiologie : Hong Kong, Syndrome respiratoire aigu sévère.
- Données de séquences moléculaires, Famille multigénique, Femelle, Flambées de maladies, Glycoprotéine de spicule des coronavirus, Humains, Mâle, Variation génétique, Épidémiologie moléculaire, Évolution moléculaire.
- Wicri :
- geographic : Hong Kong.
English descriptors
- KwdEn :
- Disease Outbreaks, Evolution, Molecular, Female, Genes, Viral (genetics), Genetic Variation, Hong Kong (epidemiology), Humans, Male, Membrane Glycoproteins (genetics), Molecular Epidemiology, Molecular Sequence Data, Multigene Family, SARS Virus (genetics), Severe Acute Respiratory Syndrome (epidemiology), Spike Glycoprotein, Coronavirus, Viral Envelope Proteins (genetics).
- MESH :
- chemical , genetics : Membrane Glycoproteins, Viral Envelope Proteins.
- geographic , epidemiology : Hong Kong.
- epidemiology : Severe Acute Respiratory Syndrome.
- genetics : Genes, Viral, SARS Virus.
- Disease Outbreaks, Evolution, Molecular, Female, Genetic Variation, Humans, Male, Molecular Epidemiology, Molecular Sequence Data, Multigene Family, Spike Glycoprotein, Coronavirus.
Abstract
The spike glycoprotein (S) gene of the severe acute respiratory syndrome-associated coronavirus (SARS-CoV) has been useful in analyzing the molecular epidemiology of the 2003 SARS outbreaks.
DOI: 10.1016/j.jcv.2006.10.001
PubMed: 17112780
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pubmed:17112780Le document en format XML
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Tang</name><affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, School of Public Health, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong SAR, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Microbiology, School of Public Health, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong SAR</wicri:regionArea></affiliation></author><author><name sortKey="Cheung, Jo L K" sort="Cheung, Jo L K" uniqKey="Cheung J" first="Jo L K" last="Cheung">Jo L K. Cheung</name></author><author><name sortKey="Chu, Ida M T" sort="Chu, Ida M T" uniqKey="Chu I" first="Ida M T" last="Chu">Ida M T. Chu</name></author><author><name sortKey="Ip, Margaret" sort="Ip, Margaret" uniqKey="Ip M" first="Margaret" last="Ip">Margaret Ip</name></author><author><name sortKey="Hui, Mamie" sort="Hui, Mamie" uniqKey="Hui M" first="Mamie" last="Hui">Mamie Hui</name></author><author><name sortKey="Peiris, Malik" sort="Peiris, Malik" uniqKey="Peiris M" first="Malik" last="Peiris">Malik Peiris</name></author><author><name sortKey="Chan, Paul K S" sort="Chan, Paul K S" uniqKey="Chan P" first="Paul K S" last="Chan">Paul K S. Chan</name></author></analytic><series><title level="j">Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</title><idno type="ISSN">1386-6532</idno><imprint><date when="2007" type="published">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Disease Outbreaks</term><term>Evolution, Molecular</term><term>Female</term><term>Genes, Viral (genetics)</term><term>Genetic Variation</term><term>Hong Kong (epidemiology)</term><term>Humans</term><term>Male</term><term>Membrane Glycoproteins (genetics)</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term><term>Multigene Family</term><term>SARS Virus (genetics)</term><term>Severe Acute Respiratory Syndrome (epidemiology)</term><term>Spike Glycoprotein, Coronavirus</term><term>Viral Envelope Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Famille multigénique</term><term>Femelle</term><term>Flambées de maladies</term><term>Glycoprotéine de spicule des coronavirus</term><term>Glycoprotéines membranaires (génétique)</term><term>Gènes viraux (génétique)</term><term>Hong Kong (épidémiologie)</term><term>Humains</term><term>Mâle</term><term>Protéines de l'enveloppe virale (génétique)</term><term>Syndrome respiratoire aigu sévère (épidémiologie)</term><term>Variation génétique</term><term>Virus du SRAS (génétique)</term><term>Épidémiologie moléculaire</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Glycoproteins</term><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Hong Kong</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genes, Viral</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Glycoprotéines membranaires</term><term>Gènes viraux</term><term>Protéines de l'enveloppe virale</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Hong Kong</term><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Disease Outbreaks</term><term>Evolution, Molecular</term><term>Female</term><term>Genetic Variation</term><term>Humans</term><term>Male</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term><term>Multigene Family</term><term>Spike Glycoprotein, Coronavirus</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Famille multigénique</term><term>Femelle</term><term>Flambées de maladies</term><term>Glycoprotéine de spicule des coronavirus</term><term>Humains</term><term>Mâle</term><term>Variation génétique</term><term>Épidémiologie moléculaire</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Hong Kong</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The spike glycoprotein (S) gene of the severe acute respiratory syndrome-associated coronavirus (SARS-CoV) has been useful in analyzing the molecular epidemiology of the 2003 SARS outbreaks.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17112780</PMID><DateCompleted><Year>2007</Year><Month>03</Month><Day>01</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1386-6532</ISSN><JournalIssue CitedMedium="Print"><Volume>38</Volume><Issue>1</Issue><PubDate><Year>2007</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</Title><ISOAbbreviation>J. Clin. Virol.</ISOAbbreviation></Journal><ArticleTitle>Characterizing 56 complete SARS-CoV S-gene sequences from Hong Kong.</ArticleTitle><Pagination><MedlinePgn>19-26</MedlinePgn></Pagination><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The spike glycoprotein (S) gene of the severe acute respiratory syndrome-associated coronavirus (SARS-CoV) has been useful in analyzing the molecular epidemiology of the 2003 SARS outbreaks.</AbstractText><AbstractText Label="OBJECTIVES" NlmCategory="OBJECTIVE">To characterize complete SARS-CoV S-gene sequences from Hong Kong.</AbstractText><AbstractText Label="STUDY DESIGN" NlmCategory="METHODS">Fifty-six SARS-CoV S-gene sequences, obtained from patients who presented with SARS to the Prince of Wales Hospital during March-May 2003, were analysed using a maximum likelihood (ML) approach, together with 138 other (both human and animal) S-gene sequences downloaded from GenBank.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">The maximum-likelihood (ML) trees showed little evolution occurring within these 56 sequences. Analysis with the other sequences, showed three distinct SARS clusters, closely correlated to previously defined early, middle and late phases of the 2003 international SARS outbreaks. In addition, two new single nucleotide variations (SNVs), T21615A and T21901A, were discovered, not previously reported elsewhere.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The ML approach to the reconstruction of tree phylogenies is known to be superior to the more popular, less computationally and time-demanding neighbour-joining (NJ) approach. The ML analysis in this study confirms the previously reported SARS epidemiology analysed mostly using the NJ approach. The two new SNVs reported here are most likely due to the tissue-culture passaging of the clinical samples.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Julian W</ForeName><Initials>JW</Initials><AffiliationInfo><Affiliation>Department of Microbiology, School of Public Health, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong SAR, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheung</LastName><ForeName>Jo L K</ForeName><Initials>JL</Initials></Author><Author ValidYN="Y"><LastName>Chu</LastName><ForeName>Ida M T</ForeName><Initials>IM</Initials></Author><Author ValidYN="Y"><LastName>Ip</LastName><ForeName>Margaret</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Hui</LastName><ForeName>Mamie</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Peiris</LastName><ForeName>Malik</ForeName><Initials>M</Initials></Author><Author 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