Microarray-in-a-tube for detection of multiple viruses.
Identifieur interne : 001F62 ( PubMed/Curation ); précédent : 001F61; suivant : 001F63Microarray-in-a-tube for detection of multiple viruses.
Auteurs : Quanjun Liu [République populaire de Chine] ; Yunfei Bai ; Qinyu Ge ; Shixin Zhou ; Tian Wen ; Zuhong LuSource :
- Clinical chemistry [ 0009-9147 ] ; 2007.
Descripteurs français
- KwdFr :
- ADN viral (analyse), Enterovirus (génétique), Humains, Reproductibilité des résultats, Réaction de polymérisation en chaîne, Sondes d'ADN, Sondes oligonucléotidiques, Séquençage par oligonucléotides en batterie (), Séquençage par oligonucléotides en batterie (instrumentation), Virologie (), Virus de la grippe A (génétique), Virus du SRAS (génétique), Virus influenza B (génétique).
- MESH :
English descriptors
- KwdEn :
- DNA Probes, DNA, Viral (analysis), Enterovirus (genetics), Humans, Influenza A virus (genetics), Influenza B virus (genetics), Oligonucleotide Array Sequence Analysis (instrumentation), Oligonucleotide Array Sequence Analysis (methods), Oligonucleotide Probes, Polymerase Chain Reaction, Reproducibility of Results, SARS Virus (genetics), Virology (methods).
- MESH :
- chemical , analysis : DNA, Viral.
- chemical : DNA Probes, Oligonucleotide Probes.
- genetics : Enterovirus, Influenza A virus, Influenza B virus, SARS Virus.
- instrumentation : Oligonucleotide Array Sequence Analysis.
- methods : Oligonucleotide Array Sequence Analysis, Virology.
- Humans, Polymerase Chain Reaction, Reproducibility of Results.
Abstract
The detection of multiple viruses is important for pathogenic diagnosis and disease control. Microarray detection is a good method, but requires complex procedures for multiple virus detection.
DOI: 10.1373/clinchem.2006.071720
PubMed: 17158198
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sort="Wen, Tian" uniqKey="Wen T" first="Tian" last="Wen">Tian Wen</name></author><author><name sortKey="Lu, Zuhong" sort="Lu, Zuhong" uniqKey="Lu Z" first="Zuhong" last="Lu">Zuhong Lu</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2007">2007</date><idno type="RBID">pubmed:17158198</idno><idno type="pmid">17158198</idno><idno type="doi">10.1373/clinchem.2006.071720</idno><idno type="wicri:Area/PubMed/Corpus">001F62</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001F62</idno><idno type="wicri:Area/PubMed/Curation">001F62</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001F62</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Microarray-in-a-tube for detection of multiple viruses.</title><author><name sortKey="Liu, Quanjun" sort="Liu, Quanjun" uniqKey="Liu Q" first="Quanjun" last="Liu">Quanjun Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Bioelectronics, Southeast University, Nanjing, People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Bioelectronics, Southeast University, Nanjing</wicri:regionArea></affiliation></author><author><name sortKey="Bai, Yunfei" sort="Bai, Yunfei" uniqKey="Bai Y" first="Yunfei" last="Bai">Yunfei Bai</name></author><author><name sortKey="Ge, Qinyu" sort="Ge, Qinyu" uniqKey="Ge Q" first="Qinyu" last="Ge">Qinyu Ge</name></author><author><name sortKey="Zhou, Shixin" sort="Zhou, Shixin" uniqKey="Zhou S" first="Shixin" last="Zhou">Shixin Zhou</name></author><author><name sortKey="Wen, Tian" sort="Wen, Tian" uniqKey="Wen T" first="Tian" last="Wen">Tian Wen</name></author><author><name sortKey="Lu, Zuhong" sort="Lu, Zuhong" uniqKey="Lu Z" first="Zuhong" last="Lu">Zuhong Lu</name></author></analytic><series><title level="j">Clinical chemistry</title><idno type="ISSN">0009-9147</idno><imprint><date when="2007" type="published">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA Probes</term><term>DNA, Viral (analysis)</term><term>Enterovirus (genetics)</term><term>Humans</term><term>Influenza A virus (genetics)</term><term>Influenza B virus (genetics)</term><term>Oligonucleotide Array Sequence Analysis (instrumentation)</term><term>Oligonucleotide Array Sequence Analysis (methods)</term><term>Oligonucleotide Probes</term><term>Polymerase Chain Reaction</term><term>Reproducibility of Results</term><term>SARS Virus (genetics)</term><term>Virology (methods)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN viral (analyse)</term><term>Enterovirus (génétique)</term><term>Humains</term><term>Reproductibilité des résultats</term><term>Réaction de polymérisation en chaîne</term><term>Sondes d'ADN</term><term>Sondes oligonucléotidiques</term><term>Séquençage par oligonucléotides en batterie ()</term><term>Séquençage par oligonucléotides en batterie (instrumentation)</term><term>Virologie ()</term><term>Virus de la grippe A (génétique)</term><term>Virus du SRAS (génétique)</term><term>Virus influenza B (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA Probes</term><term>Oligonucleotide Probes</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ADN viral</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Enterovirus</term><term>Influenza A virus</term><term>Influenza B virus</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Enterovirus</term><term>Virus de la grippe A</term><term>Virus du SRAS</term><term>Virus influenza B</term></keywords><keywords scheme="MESH" qualifier="instrumentation" xml:lang="en"><term>Oligonucleotide Array Sequence Analysis</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Oligonucleotide Array Sequence Analysis</term><term>Virology</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Humans</term><term>Polymerase Chain Reaction</term><term>Reproducibility of Results</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Humains</term><term>Reproductibilité des résultats</term><term>Réaction de polymérisation en chaîne</term><term>Sondes d'ADN</term><term>Sondes oligonucléotidiques</term><term>Séquençage par oligonucléotides en batterie</term><term>Virologie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The detection of multiple viruses is important for pathogenic diagnosis and disease control. Microarray detection is a good method, but requires complex procedures for multiple virus detection.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17158198</PMID><DateCompleted><Year>2007</Year><Month>03</Month><Day>12</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>03</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0009-9147</ISSN><JournalIssue CitedMedium="Print"><Volume>53</Volume><Issue>2</Issue><PubDate><Year>2007</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Clinical chemistry</Title><ISOAbbreviation>Clin. Chem.</ISOAbbreviation></Journal><ArticleTitle>Microarray-in-a-tube for detection of multiple viruses.</ArticleTitle><Pagination><MedlinePgn>188-94</MedlinePgn></Pagination><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The detection of multiple viruses is important for pathogenic diagnosis and disease control. Microarray detection is a good method, but requires complex procedures for multiple virus detection.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">We developed a novel PCR assay, the microarray-in-a-tube system, which integrates multiple PCR processes and DNA microarrays for multiple virus detection. A 5 x 5 oligonucleotide microarray for detecting 4 respiratory tract viruses (severe acute respiratory syndrome-associated coronavirus, influenza A virus, influenza B virus, and enterovirus) with inner controls was arranged on the inner surface of a specially designed Eppendorf cap with a flat, optically transparent window.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">We were able to perform all detection processes in the encapsulated system without opening the cap. The 4 viruses were successfully amplified by one-step reverse transcription-PCR in the encapsulated tube. After the PCR process, the microarray-in-a-tube was inverted, and the fluorescence-labeled PCR products were directly hybridized on the microarray. Hybridization signals were obtained with an ordinary fluorescent microscope. The sensitivity of the system for virus detection reached 10(2) copies/microL. With the help of inner controls, the system provided reliable results without false negatives and false positives.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The microarray-in-a-tube system is a rapid, labor-saving tool for multiple virus detection with several advantages, such as convenience, prevention of cross-contamination of the PCR products, and potential for multiple-gene detection.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Quanjun</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Bioelectronics, Southeast University, Nanjing, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bai</LastName><ForeName>Yunfei</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Ge</LastName><ForeName>Qinyu</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Shixin</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Wen</LastName><ForeName>Tian</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Zuhong</ForeName><Initials>Z</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2006</Year><Month>12</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Clin Chem</MedlineTA><NlmUniqueID>9421549</NlmUniqueID><ISSNLinking>0009-9147</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D015342">DNA Probes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004279">DNA, Viral</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D015345">Oligonucleotide Probes</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015342" MajorTopicYN="N">DNA Probes</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="Y">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004770" MajorTopicYN="N">Enterovirus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009981" MajorTopicYN="N">Influenza B virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName><QualifierName UI="Q000295" MajorTopicYN="N">instrumentation</QualifierName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015345" MajorTopicYN="N">Oligonucleotide Probes</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016133" MajorTopicYN="N">Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045473" MajorTopicYN="N">SARS Virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014773" 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