Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Non-molecular-clock-like evolution following viral origins in homo sapiens.

Identifieur interne : 001F36 ( PubMed/Curation ); précédent : 001F35; suivant : 001F37

Non-molecular-clock-like evolution following viral origins in homo sapiens.

Auteurs : Wendy Mok [Canada] ; Kelly Seto ; Jon Stone

Source :

RBID : pubmed:19461973

Abstract

Researchers routinely adopt molecular clock assumptions in conducting sequence analyses to estimate dates for viral origins in humans. We used computational methods to examine the extent to which this practice can result in inaccurate 'retrodiction.' Failing to account for dynamic molecular evolution can affect greatly estimating index case dates, resulting in an overestimated age for the SARS-CoV-human infection, for instance.

PubMed: 19461973

Links toward previous steps (curation, corpus...)


Links to Exploration step

pubmed:19461973

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Non-molecular-clock-like evolution following viral origins in homo sapiens.</title>
<author>
<name sortKey="Mok, Wendy" sort="Mok, Wendy" uniqKey="Mok W" first="Wendy" last="Mok">Wendy Mok</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton ON L8S 4K1, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton ON L8S 4K1</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Seto, Kelly" sort="Seto, Kelly" uniqKey="Seto K" first="Kelly" last="Seto">Kelly Seto</name>
</author>
<author>
<name sortKey="Stone, Jon" sort="Stone, Jon" uniqKey="Stone J" first="Jon" last="Stone">Jon Stone</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2007">2007</date>
<idno type="RBID">pubmed:19461973</idno>
<idno type="pmid">19461973</idno>
<idno type="wicri:Area/PubMed/Corpus">001F36</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001F36</idno>
<idno type="wicri:Area/PubMed/Curation">001F36</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001F36</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Non-molecular-clock-like evolution following viral origins in homo sapiens.</title>
<author>
<name sortKey="Mok, Wendy" sort="Mok, Wendy" uniqKey="Mok W" first="Wendy" last="Mok">Wendy Mok</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton ON L8S 4K1, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton ON L8S 4K1</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Seto, Kelly" sort="Seto, Kelly" uniqKey="Seto K" first="Kelly" last="Seto">Kelly Seto</name>
</author>
<author>
<name sortKey="Stone, Jon" sort="Stone, Jon" uniqKey="Stone J" first="Jon" last="Stone">Jon Stone</name>
</author>
</analytic>
<series>
<title level="j">Evolutionary bioinformatics online</title>
<idno type="eISSN">1176-9343</idno>
<imprint>
<date when="2007" type="published">2007</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Researchers routinely adopt molecular clock assumptions in conducting sequence analyses to estimate dates for viral origins in humans. We used computational methods to examine the extent to which this practice can result in inaccurate 'retrodiction.' Failing to account for dynamic molecular evolution can affect greatly estimating index case dates, resulting in an overestimated age for the SARS-CoV-human infection, for instance.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM">
<PMID Version="1">19461973</PMID>
<DateCompleted>
<Year>2010</Year>
<Month>05</Month>
<Day>20</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>08</Month>
<Day>30</Day>
</DateRevised>
<Article PubModel="Electronic">
<Journal>
<ISSN IssnType="Electronic">1176-9343</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>3</Volume>
<PubDate>
<Year>2007</Year>
<Month>Sep</Month>
<Day>26</Day>
</PubDate>
</JournalIssue>
<Title>Evolutionary bioinformatics online</Title>
<ISOAbbreviation>Evol. Bioinform. Online</ISOAbbreviation>
</Journal>
<ArticleTitle>Non-molecular-clock-like evolution following viral origins in homo sapiens.</ArticleTitle>
<Pagination>
<MedlinePgn>263-6</MedlinePgn>
</Pagination>
<Abstract>
<AbstractText>Researchers routinely adopt molecular clock assumptions in conducting sequence analyses to estimate dates for viral origins in humans. We used computational methods to examine the extent to which this practice can result in inaccurate 'retrodiction.' Failing to account for dynamic molecular evolution can affect greatly estimating index case dates, resulting in an overestimated age for the SARS-CoV-human infection, for instance.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Mok</LastName>
<ForeName>Wendy</ForeName>
<Initials>W</Initials>
<AffiliationInfo>
<Affiliation>Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton ON L8S 4K1, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Seto</LastName>
<ForeName>Kelly</ForeName>
<Initials>K</Initials>
</Author>
<Author ValidYN="Y">
<LastName>Stone</LastName>
<ForeName>Jon</ForeName>
<Initials>J</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2007</Year>
<Month>09</Month>
<Day>26</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>Evol Bioinform Online</MedlineTA>
<NlmUniqueID>101256319</NlmUniqueID>
<ISSNLinking>1176-9343</ISSNLinking>
</MedlineJournalInfo>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">SARS-CoV</Keyword>
<Keyword MajorTopicYN="N">computational biology</Keyword>
<Keyword MajorTopicYN="N">epidemic</Keyword>
<Keyword MajorTopicYN="N">mutation</Keyword>
<Keyword MajorTopicYN="N">virus</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="entrez">
<Year>2009</Year>
<Month>5</Month>
<Day>23</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2007</Year>
<Month>1</Month>
<Day>1</Day>
<Hour>0</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2007</Year>
<Month>1</Month>
<Day>1</Day>
<Hour>0</Hour>
<Minute>1</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">19461973</ArticleId>
<ArticleId IdType="pmc">PMC2684125</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Science. 2004 Mar 12;303(5664):1666-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14752165</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Infect Dis. 2004 Feb 6;4:3</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15028113</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 1983 Dec;1(1):125-42</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6599960</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Biol. 2006 Feb;4(2):e50</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16464130</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Biol. 2006 May;4(5):e88</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16683862</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 1997 Dec 15;25(24):4876-82</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9396791</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Evol. 1980 Dec;16(2):111-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7463489</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Am J Health Syst Pharm. 2007 Jan 15;64(2):149-65</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17215466</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>N Engl J Med. 2003 Dec 18;349(25):2469-70</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14681521</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2004 Jul 13;101(28):10452-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15235128</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001F36 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd -nk 001F36 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    PubMed
   |étape=   Curation
   |type=    RBID
   |clé=     pubmed:19461973
   |texte=   Non-molecular-clock-like evolution following viral origins in homo sapiens.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Curation/RBID.i   -Sk "pubmed:19461973" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a SrasV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021