Molecular diagnosis of severe acute respiratory syndrome: the state of the art.
Identifieur interne : 002471 ( PubMed/Corpus ); précédent : 002470; suivant : 002472Molecular diagnosis of severe acute respiratory syndrome: the state of the art.
Auteurs : James B. Mahony ; Susan RichardsonSource :
- The Journal of molecular diagnostics : JMD [ 1525-1578 ] ; 2005.
English descriptors
- KwdEn :
- Animals, Humans, RNA, Viral (analysis), RNA, Viral (genetics), RNA, Viral (isolation & purification), Reagent Kits, Diagnostic, Reverse Transcriptase Polymerase Chain Reaction, SARS Virus (genetics), SARS Virus (isolation & purification), Severe Acute Respiratory Syndrome (diagnosis), Severe Acute Respiratory Syndrome (epidemiology), Severe Acute Respiratory Syndrome (virology), Specimen Handling.
- MESH :
- chemical , analysis : RNA, Viral.
- chemical , genetics : RNA, Viral.
- chemical , isolation & purification : RNA, Viral.
- diagnosis : Severe Acute Respiratory Syndrome.
- epidemiology : Severe Acute Respiratory Syndrome.
- genetics : SARS Virus.
- isolation & purification : SARS Virus.
- virology : Severe Acute Respiratory Syndrome.
- Animals, Humans, Reagent Kits, Diagnostic, Reverse Transcriptase Polymerase Chain Reaction, Specimen Handling.
Abstract
Severe acute respiratory syndrome (SARS) first appeared in Guangdong Province, China, in November 2002. Although virus isolation and serology were useful early in the SARS outbreak for diagnosing new cases, these tests are not generally useful because virus culture requires a BSL-3 laboratory and seroconversion is often delayed until 2 to 3 weeks after infection. The first qualitative reverse transcriptase-polymerase chain reaction tests for SARS-coronavirus (CoV) were sensitive and capable of detecting 1 to 10 genome equivalents. These assays were quickly supplemented with quantitative real-time assays that helped elucidate the natural history of SARS, particularly the initial presence of low viral loads in the upper respiratory tract and high viral loads in the lower respiratory tract. The unique natural history of SARS-CoV infection dictates the testing of both respiratory and nonrespiratory specimens, the testing of multiple specimens from the same patient, and sending out positives to be confirmed by a reference laboratory. Commercially available reverse transcriptase-polymerase chain reaction tests for SARS have recently appeared; however, meaningful evaluations of these assays have not yet been performed and their true performance has not been determined. These and other issues related to diagnosis of SARS-CoV infection are discussed in this review.
DOI: 10.1016/S1525-1578(10)60587-9
PubMed: 16258152
Links to Exploration step
pubmed:16258152Le document en format XML
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<author><name sortKey="Mahony, James B" sort="Mahony, James B" uniqKey="Mahony J" first="James B" last="Mahony">James B. Mahony</name>
<affiliation><nlm:affiliation>Regional Virology Laboratory, St. Joseph's Hospital, 50 Charlton Ave. East, Hamilton, ON L8N 4A6, Canada. mahonyj@mcmaster.ca</nlm:affiliation>
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<author><name sortKey="Richardson, Susan" sort="Richardson, Susan" uniqKey="Richardson S" first="Susan" last="Richardson">Susan Richardson</name>
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<term>Reagent Kits, Diagnostic</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
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<front><div type="abstract" xml:lang="en">Severe acute respiratory syndrome (SARS) first appeared in Guangdong Province, China, in November 2002. Although virus isolation and serology were useful early in the SARS outbreak for diagnosing new cases, these tests are not generally useful because virus culture requires a BSL-3 laboratory and seroconversion is often delayed until 2 to 3 weeks after infection. The first qualitative reverse transcriptase-polymerase chain reaction tests for SARS-coronavirus (CoV) were sensitive and capable of detecting 1 to 10 genome equivalents. These assays were quickly supplemented with quantitative real-time assays that helped elucidate the natural history of SARS, particularly the initial presence of low viral loads in the upper respiratory tract and high viral loads in the lower respiratory tract. The unique natural history of SARS-CoV infection dictates the testing of both respiratory and nonrespiratory specimens, the testing of multiple specimens from the same patient, and sending out positives to be confirmed by a reference laboratory. Commercially available reverse transcriptase-polymerase chain reaction tests for SARS have recently appeared; however, meaningful evaluations of these assays have not yet been performed and their true performance has not been determined. These and other issues related to diagnosis of SARS-CoV infection are discussed in this review.</div>
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<Abstract><AbstractText>Severe acute respiratory syndrome (SARS) first appeared in Guangdong Province, China, in November 2002. Although virus isolation and serology were useful early in the SARS outbreak for diagnosing new cases, these tests are not generally useful because virus culture requires a BSL-3 laboratory and seroconversion is often delayed until 2 to 3 weeks after infection. The first qualitative reverse transcriptase-polymerase chain reaction tests for SARS-coronavirus (CoV) were sensitive and capable of detecting 1 to 10 genome equivalents. These assays were quickly supplemented with quantitative real-time assays that helped elucidate the natural history of SARS, particularly the initial presence of low viral loads in the upper respiratory tract and high viral loads in the lower respiratory tract. The unique natural history of SARS-CoV infection dictates the testing of both respiratory and nonrespiratory specimens, the testing of multiple specimens from the same patient, and sending out positives to be confirmed by a reference laboratory. Commercially available reverse transcriptase-polymerase chain reaction tests for SARS have recently appeared; however, meaningful evaluations of these assays have not yet been performed and their true performance has not been determined. These and other issues related to diagnosis of SARS-CoV infection are discussed in this review.</AbstractText>
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<ArticleIdList><ArticleId IdType="pubmed">16258152</ArticleId>
<ArticleId IdType="pii">S1525-1578(10)60587-9</ArticleId>
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<ArticleId IdType="doi">10.1016/S1525-1578(10)60587-9</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Sex Transm Infect. 2002 Aug;78(4):232-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12181457</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Southeast Asian J Trop Med Public Health. 2004 Sep;35(3):623-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15689078</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Lancet. 2003 Apr 19;361(9366):1319-25</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12711465</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>N Engl J Med. 2003 May 15;348(20):1995-2005</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12671061</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>N Engl J Med. 2003 May 15;348(20):1967-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12690091</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>N Engl J Med. 2003 May 15;348(20):1953-66</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12690092</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Lancet. 2003 May 17;361(9370):1701-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12767737</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2003 May 30;300(5624):1399-404</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12730501</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Lancet. 2003 May 24;361(9371):1767-72</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12781535</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2003 Oct 10;302(5643):276-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12958366</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem Biophys Res Commun. 2003 Dec 26;312(4):1290-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14652014</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>N Engl J Med. 2003 Dec 18;349(25):2468-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14681520</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>CMAJ. 2004 Jan 6;170(1):47-54</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14707219</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Lancet Infect Dis. 2004 Feb;4(2):64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14959754</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2004 Mar;42(3):987-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15004042</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2004 Feb;10(2):232-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15030688</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2004 Feb;10(2):251-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15030692</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2004 Feb;10(2):294-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15030700</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Cell Probes. 2004 Apr;18(2):75-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15051115</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Med. 2004 Apr;10(4):368-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15034574</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2004 Apr;42(4):1471-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15070991</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>N Engl J Med. 2004 Apr 22;350(17):1740-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15103000</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2004 May;42(5):1956-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15131154</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2004 May;42(5):2043-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15131168</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Virol. 2004 Jul;30(3):214-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15135737</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2004 May;10(5):825-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15200815</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Clin Chem. 2004 Jul;50(7):1237-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15229153</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol Methods. 2004 Sep 1;120(1):33-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15234807</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Lab Invest. 2004 Sep;84(9):1085-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15195120</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol Methods. 2004 Dec 1;122(1):29-36</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15488617</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Adv Virus Res. 1997;48:1-100</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9233431</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2005 Jan;79(2):884-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15613317</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2001 May;39(5):1796-801</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11325993</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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