The immune gene repertoire of an important viral reservoir, the Australian black flying fox.
Identifieur interne : 001348 ( PubMed/Corpus ); précédent : 001347; suivant : 001349The immune gene repertoire of an important viral reservoir, the Australian black flying fox.
Auteurs : Anthony T. Papenfuss ; Michelle L. Baker ; Zhi-Ping Feng ; Mary Tachedjian ; Gary Crameri ; Chris Cowled ; Justin Ng ; Vijaya Janardhana ; Hume E. Field ; Lin-Fa WangSource :
- BMC genomics [ 1471-2164 ] ; 2012.
English descriptors
- KwdEn :
- Adaptive Immunity (genetics), Amino Acid Sequence, Animals, Australia, Chiroptera (genetics), Chiroptera (immunology), Chiroptera (virology), Conserved Sequence (genetics), Disease Reservoirs (virology), Disease Vectors, Histocompatibility Antigens (chemistry), Histocompatibility Antigens (genetics), Horses (genetics), Humans, Immune System (metabolism), Immunity, Innate (genetics), Molecular Sequence Annotation, Molecular Sequence Data, Phylogeny, RNA, Messenger (genetics), RNA, Messenger (metabolism), Receptors, Immunologic (chemistry), Receptors, Immunologic (genetics), Receptors, Immunologic (metabolism), Sequence Alignment, Sequence Homology, Nucleic Acid, Transcriptome (genetics).
- MESH :
- chemical , chemistry : Histocompatibility Antigens, Receptors, Immunologic.
- chemical , genetics : Histocompatibility Antigens, RNA, Messenger, Receptors, Immunologic.
- chemical , metabolism : RNA, Messenger, Receptors, Immunologic.
- geographic : Australia.
- genetics : Adaptive Immunity, Chiroptera, Conserved Sequence, Horses, Immunity, Innate, Transcriptome.
- immunology : Chiroptera.
- metabolism : Immune System.
- virology : Chiroptera, Disease Reservoirs.
- Amino Acid Sequence, Animals, Disease Vectors, Humans, Molecular Sequence Annotation, Molecular Sequence Data, Phylogeny, Sequence Alignment, Sequence Homology, Nucleic Acid.
Abstract
Bats are the natural reservoir host for a range of emerging and re-emerging viruses, including SARS-like coronaviruses, Ebola viruses, henipaviruses and Rabies viruses. However, the mechanisms responsible for the control of viral replication in bats are not understood and there is little information available on any aspect of antiviral immunity in bats. Massively parallel sequencing of the bat transcriptome provides the opportunity for rapid gene discovery. Although the genomes of one megabat and one microbat have now been sequenced to low coverage, no transcriptomic datasets have been reported from any bat species. In this study, we describe the immune transcriptome of the Australian flying fox, Pteropus alecto, providing an important resource for identification of genes involved in a range of activities including antiviral immunity.
DOI: 10.1186/1471-2164-13-261
PubMed: 22716473
Links to Exploration step
pubmed:22716473Le document en format XML
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Baker</name></author><author><name sortKey="Feng, Zhi Ping" sort="Feng, Zhi Ping" uniqKey="Feng Z" first="Zhi-Ping" last="Feng">Zhi-Ping Feng</name></author><author><name sortKey="Tachedjian, Mary" sort="Tachedjian, Mary" uniqKey="Tachedjian M" first="Mary" last="Tachedjian">Mary Tachedjian</name></author><author><name sortKey="Crameri, Gary" sort="Crameri, Gary" uniqKey="Crameri G" first="Gary" last="Crameri">Gary Crameri</name></author><author><name sortKey="Cowled, Chris" sort="Cowled, Chris" uniqKey="Cowled C" first="Chris" last="Cowled">Chris Cowled</name></author><author><name sortKey="Ng, Justin" sort="Ng, Justin" uniqKey="Ng J" first="Justin" last="Ng">Justin Ng</name></author><author><name sortKey="Janardhana, Vijaya" sort="Janardhana, Vijaya" uniqKey="Janardhana V" first="Vijaya" last="Janardhana">Vijaya Janardhana</name></author><author><name sortKey="Field, Hume E" sort="Field, Hume E" uniqKey="Field H" first="Hume E" last="Field">Hume E. 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Papenfuss</name><affiliation><nlm:affiliation>The Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, VIC 3052, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Baker, Michelle L" sort="Baker, Michelle L" uniqKey="Baker M" first="Michelle L" last="Baker">Michelle L. Baker</name></author><author><name sortKey="Feng, Zhi Ping" sort="Feng, Zhi Ping" uniqKey="Feng Z" first="Zhi-Ping" last="Feng">Zhi-Ping Feng</name></author><author><name sortKey="Tachedjian, Mary" sort="Tachedjian, Mary" uniqKey="Tachedjian M" first="Mary" last="Tachedjian">Mary Tachedjian</name></author><author><name sortKey="Crameri, Gary" sort="Crameri, Gary" uniqKey="Crameri G" first="Gary" last="Crameri">Gary Crameri</name></author><author><name sortKey="Cowled, Chris" sort="Cowled, Chris" uniqKey="Cowled C" first="Chris" last="Cowled">Chris Cowled</name></author><author><name sortKey="Ng, Justin" sort="Ng, Justin" uniqKey="Ng J" first="Justin" last="Ng">Justin Ng</name></author><author><name sortKey="Janardhana, Vijaya" sort="Janardhana, Vijaya" uniqKey="Janardhana V" first="Vijaya" last="Janardhana">Vijaya Janardhana</name></author><author><name sortKey="Field, Hume E" sort="Field, Hume E" uniqKey="Field H" first="Hume E" last="Field">Hume E. Field</name></author><author><name sortKey="Wang, Lin Fa" sort="Wang, Lin Fa" uniqKey="Wang L" first="Lin-Fa" last="Wang">Lin-Fa Wang</name></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adaptive Immunity (genetics)</term><term>Amino Acid Sequence</term><term>Animals</term><term>Australia</term><term>Chiroptera (genetics)</term><term>Chiroptera (immunology)</term><term>Chiroptera (virology)</term><term>Conserved Sequence (genetics)</term><term>Disease Reservoirs (virology)</term><term>Disease Vectors</term><term>Histocompatibility Antigens (chemistry)</term><term>Histocompatibility Antigens (genetics)</term><term>Horses (genetics)</term><term>Humans</term><term>Immune System (metabolism)</term><term>Immunity, Innate (genetics)</term><term>Molecular Sequence Annotation</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>RNA, Messenger (genetics)</term><term>RNA, Messenger (metabolism)</term><term>Receptors, Immunologic (chemistry)</term><term>Receptors, Immunologic (genetics)</term><term>Receptors, Immunologic (metabolism)</term><term>Sequence Alignment</term><term>Sequence Homology, Nucleic Acid</term><term>Transcriptome (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Histocompatibility Antigens</term><term>Receptors, Immunologic</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Histocompatibility Antigens</term><term>RNA, Messenger</term><term>Receptors, Immunologic</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA, Messenger</term><term>Receptors, Immunologic</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Australia</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Adaptive Immunity</term><term>Chiroptera</term><term>Conserved Sequence</term><term>Horses</term><term>Immunity, Innate</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Immune System</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Disease Reservoirs</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Disease Vectors</term><term>Humans</term><term>Molecular Sequence Annotation</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Alignment</term><term>Sequence Homology, Nucleic Acid</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bats are the natural reservoir host for a range of emerging and re-emerging viruses, including SARS-like coronaviruses, Ebola viruses, henipaviruses and Rabies viruses. However, the mechanisms responsible for the control of viral replication in bats are not understood and there is little information available on any aspect of antiviral immunity in bats. Massively parallel sequencing of the bat transcriptome provides the opportunity for rapid gene discovery. Although the genomes of one megabat and one microbat have now been sequenced to low coverage, no transcriptomic datasets have been reported from any bat species. In this study, we describe the immune transcriptome of the Australian flying fox, Pteropus alecto, providing an important resource for identification of genes involved in a range of activities including antiviral immunity.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22716473</PMID><DateCompleted><Year>2012</Year><Month>12</Month><Day>19</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>13</Volume><PubDate><Year>2012</Year><Month>Jun</Month><Day>20</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>The immune gene repertoire of an important viral reservoir, the Australian black flying fox.</ArticleTitle><Pagination><MedlinePgn>261</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2164-13-261</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Bats are the natural reservoir host for a range of emerging and re-emerging viruses, including SARS-like coronaviruses, Ebola viruses, henipaviruses and Rabies viruses. However, the mechanisms responsible for the control of viral replication in bats are not understood and there is little information available on any aspect of antiviral immunity in bats. Massively parallel sequencing of the bat transcriptome provides the opportunity for rapid gene discovery. Although the genomes of one megabat and one microbat have now been sequenced to low coverage, no transcriptomic datasets have been reported from any bat species. In this study, we describe the immune transcriptome of the Australian flying fox, Pteropus alecto, providing an important resource for identification of genes involved in a range of activities including antiviral immunity.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Towards understanding the adaptations that have allowed bats to coexist with viruses, we have de novo assembled transcriptome sequence from immune tissues and stimulated cells from P. alecto. We identified about 18,600 genes involved in a broad range of activities with the most highly expressed genes involved in cell growth and maintenance, enzyme activity, cellular components and metabolism and energy pathways. 3.5% of the bat transcribed genes corresponded to immune genes and a total of about 500 immune genes were identified, providing an overview of both innate and adaptive immunity. A small proportion of transcripts found no match with annotated sequences in any of the public databases and may represent bat-specific transcripts.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">This study represents the first reported bat transcriptome dataset and provides a survey of expressed bat genes that complement existing bat genomic data. In addition, these data provide insight into genes relevant to the antiviral responses of bats, and form a basis for examining the roles of these molecules in immune response to viral infection.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Papenfuss</LastName><ForeName>Anthony T</ForeName><Initials>AT</Initials><AffiliationInfo><Affiliation>The Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, VIC 3052, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Baker</LastName><ForeName>Michelle L</ForeName><Initials>ML</Initials></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Zhi-Ping</ForeName><Initials>ZP</Initials></Author><Author ValidYN="Y"><LastName>Tachedjian</LastName><ForeName>Mary</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Crameri</LastName><ForeName>Gary</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Cowled</LastName><ForeName>Chris</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Ng</LastName><ForeName>Justin</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Janardhana</LastName><ForeName>Vijaya</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Field</LastName><ForeName>Hume E</ForeName><Initials>HE</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Lin-Fa</ForeName><Initials>LF</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>06</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006649">Histocompatibility Antigens</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D011971">Receptors, Immunologic</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D056704" MajorTopicYN="N">Adaptive Immunity</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001315" MajorTopicYN="N" Type="Geographic">Australia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="Y">immunology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004197" MajorTopicYN="N">Disease Reservoirs</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004199" MajorTopicYN="Y">Disease Vectors</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006649" MajorTopicYN="N">Histocompatibility Antigens</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006736" MajorTopicYN="N">Horses</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007107" MajorTopicYN="N">Immune System</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007113" MajorTopicYN="N">Immunity, Innate</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011971" MajorTopicYN="N">Receptors, Immunologic</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName><QualifierName UI="Q000235" 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