Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline.
Identifieur interne : 000E40 ( PubMed/Corpus ); précédent : 000E39; suivant : 000E41Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline.
Auteurs : Simon Henriet ; Sara Sumic ; Carlette Doufoundou-Guilengui ; Marit Flo Jensen ; Camille Grandmougin ; Kateryna Fal ; Eric Thompson ; Jean-Nicolas Volff ; Daniel ChourroutSource :
- Nucleic acids research [ 1362-4962 ] ; 2015.
English descriptors
- KwdEn :
- Amino Acid Sequence, Animals, Endogenous Retroviruses (genetics), Gene Expression Regulation, Developmental, Germ Cells, HEK293 Cells, Humans, Molecular Sequence Data, Polymorphism, Genetic, Promoter Regions, Genetic, RNA (genetics), Sequence Homology, Amino Acid, Urochordata (genetics), Viral Envelope Proteins (chemistry).
- MESH :
- chemical , chemistry : Viral Envelope Proteins.
- chemical , genetics : RNA.
- genetics : Endogenous Retroviruses, Urochordata.
- Amino Acid Sequence, Animals, Gene Expression Regulation, Developmental, Germ Cells, HEK293 Cells, Humans, Molecular Sequence Data, Polymorphism, Genetic, Promoter Regions, Genetic, Sequence Homology, Amino Acid.
Abstract
Selective pressure to maintain small genome size implies control of transposable elements, and most old classes of retrotransposons are indeed absent from the very compact genome of the tunicate Oikopleura dioica. Nonetheless, two families of retrotransposons are present, including the Tor elements. The gene organization within Tor elements is similar to that of LTR retrotransposons and retroviruses. In addition to gag and pol, many Tor elements carry a third gene encoding viral envelope-like proteins (Env) that may mediate infection. We show that the Tor family contains distinct classes of elements. In some classes, env mRNA is transcribed from the 5'LTR as in retroviruses. In others, env is transcribed from an additional promoter located downstream of the 5'LTR. Tor Env proteins are membrane-associated glycoproteins which exhibit some features of viral membrane fusion proteins. Whereas some elements are expressed in the adult testis, many others are specifically expressed in embryonic somatic cells adjacent to primordial germ cells. Such embryonic expression depends on determinants present in the Tor elements and not on their surrounding genomic environment. Our study shows that unusual modes of transcription and expression close to the germline may contribute to the proliferation of Tor elements.
DOI: 10.1093/nar/gkv169
PubMed: 25779047
Links to Exploration step
pubmed:25779047Le document en format XML
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CNRS UMR 5242 - INRA USC 1370, Lyon, 69364 Lyon cedex 07, France.</nlm:affiliation></affiliation></author><author><name sortKey="Chourrout, Daniel" sort="Chourrout, Daniel" uniqKey="Chourrout D" first="Daniel" last="Chourrout">Daniel Chourrout</name><affiliation><nlm:affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Nucleic acids research</title><idno type="eISSN">1362-4962</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Endogenous Retroviruses (genetics)</term><term>Gene Expression Regulation, Developmental</term><term>Germ Cells</term><term>HEK293 Cells</term><term>Humans</term><term>Molecular Sequence Data</term><term>Polymorphism, Genetic</term><term>Promoter Regions, Genetic</term><term>RNA (genetics)</term><term>Sequence Homology, Amino Acid</term><term>Urochordata (genetics)</term><term>Viral Envelope Proteins (chemistry)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Endogenous Retroviruses</term><term>Urochordata</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Gene Expression Regulation, Developmental</term><term>Germ Cells</term><term>HEK293 Cells</term><term>Humans</term><term>Molecular Sequence Data</term><term>Polymorphism, Genetic</term><term>Promoter Regions, Genetic</term><term>Sequence Homology, Amino Acid</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Selective pressure to maintain small genome size implies control of transposable elements, and most old classes of retrotransposons are indeed absent from the very compact genome of the tunicate Oikopleura dioica. Nonetheless, two families of retrotransposons are present, including the Tor elements. The gene organization within Tor elements is similar to that of LTR retrotransposons and retroviruses. In addition to gag and pol, many Tor elements carry a third gene encoding viral envelope-like proteins (Env) that may mediate infection. We show that the Tor family contains distinct classes of elements. In some classes, env mRNA is transcribed from the 5'LTR as in retroviruses. In others, env is transcribed from an additional promoter located downstream of the 5'LTR. Tor Env proteins are membrane-associated glycoproteins which exhibit some features of viral membrane fusion proteins. Whereas some elements are expressed in the adult testis, many others are specifically expressed in embryonic somatic cells adjacent to primordial germ cells. Such embryonic expression depends on determinants present in the Tor elements and not on their surrounding genomic environment. Our study shows that unusual modes of transcription and expression close to the germline may contribute to the proliferation of Tor elements. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25779047</PMID><DateCompleted><Year>2015</Year><Month>07</Month><Day>07</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1362-4962</ISSN><JournalIssue CitedMedium="Internet"><Volume>43</Volume><Issue>7</Issue><PubDate><Year>2015</Year><Month>Apr</Month><Day>20</Day></PubDate></JournalIssue><Title>Nucleic acids research</Title><ISOAbbreviation>Nucleic Acids Res.</ISOAbbreviation></Journal><ArticleTitle>Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline.</ArticleTitle><Pagination><MedlinePgn>3701-11</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/nar/gkv169</ELocationID><Abstract><AbstractText>Selective pressure to maintain small genome size implies control of transposable elements, and most old classes of retrotransposons are indeed absent from the very compact genome of the tunicate Oikopleura dioica. Nonetheless, two families of retrotransposons are present, including the Tor elements. The gene organization within Tor elements is similar to that of LTR retrotransposons and retroviruses. In addition to gag and pol, many Tor elements carry a third gene encoding viral envelope-like proteins (Env) that may mediate infection. We show that the Tor family contains distinct classes of elements. In some classes, env mRNA is transcribed from the 5'LTR as in retroviruses. In others, env is transcribed from an additional promoter located downstream of the 5'LTR. Tor Env proteins are membrane-associated glycoproteins which exhibit some features of viral membrane fusion proteins. Whereas some elements are expressed in the adult testis, many others are specifically expressed in embryonic somatic cells adjacent to primordial germ cells. Such embryonic expression depends on determinants present in the Tor elements and not on their surrounding genomic environment. Our study shows that unusual modes of transcription and expression close to the germline may contribute to the proliferation of Tor elements. </AbstractText><CopyrightInformation>© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Henriet</LastName><ForeName>Simon</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway simon.henriet@sars.uib.no.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sumic</LastName><ForeName>Sara</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Doufoundou-Guilengui</LastName><ForeName>Carlette</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jensen</LastName><ForeName>Marit Flo</ForeName><Initials>MF</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grandmougin</LastName><ForeName>Camille</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fal</LastName><ForeName>Kateryna</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Thompson</LastName><ForeName>Eric</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway Department of Biology, University of Bergen, Bergen, N-5020, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Volff</LastName><ForeName>Jean-Nicolas</ForeName><Initials>JN</Initials><AffiliationInfo><Affiliation>Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon - CNRS UMR 5242 - INRA USC 1370, Lyon, 69364 Lyon cedex 07, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chourrout</LastName><ForeName>Daniel</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5008, Norway.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>03</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Nucleic Acids Res</MedlineTA><NlmUniqueID>0411011</NlmUniqueID><ISSNLinking>0305-1048</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014759">Viral Envelope Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>63231-63-0</RegistryNumber><NameOfSubstance UI="D012313">RNA</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020077" MajorTopicYN="N">Endogenous Retroviruses</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018507" MajorTopicYN="Y">Gene Expression Regulation, Developmental</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005854" MajorTopicYN="Y">Germ Cells</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D057809" MajorTopicYN="N">HEK293 Cells</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="N">Polymorphism, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011401" MajorTopicYN="N">Promoter Regions, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012313" MajorTopicYN="N">RNA</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014561" MajorTopicYN="N">Urochordata</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014759" MajorTopicYN="N">Viral Envelope Proteins</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>02</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>11</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>3</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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