Molecular characterization of human coronaviruses and their circulation dynamics in Kenya, 2009-2012.
Identifieur interne : 000D12 ( PubMed/Corpus ); précédent : 000D11; suivant : 000D13Molecular characterization of human coronaviruses and their circulation dynamics in Kenya, 2009-2012.
Auteurs : Lenata A. Sipulwa ; Juliette R. Ongus ; Rodney L. Coldren ; Wallace D. BulimoSource :
- Virology journal [ 1743-422X ] ; 2016.
English descriptors
- KwdEn :
- Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (epidemiology), Coronavirus Infections (history), Coronavirus Infections (virology), Genes, pol, History, 21st Century, Humans, Kenya (epidemiology), Phylogeny, Population Surveillance, Prevalence, RNA, Viral.
- MESH :
- chemical : RNA, Viral.
- classification : Coronavirus.
- epidemiology : Coronavirus Infections, Kenya.
- genetics : Coronavirus.
- history : Coronavirus Infections.
- isolation & purification : Coronavirus.
- virology : Coronavirus Infections.
- Genes, pol, History, 21st Century, Humans, Phylogeny, Population Surveillance, Prevalence.
Abstract
Human Coronaviruses (HCoV) are a common cause of respiratory illnesses and are responsible for considerable morbidity and hospitalization across all age groups especially in individuals with compromised immunity. There are six known species of HCoV: HCoV-229E, HCoV-NL63, HCoV-HKU1, HCoV-OC43, MERS-CoV and SARS-HCoV. Although studies have shown evidence of global distribution of HCoVs, there is limited information on their presence and distribution in Kenya.
DOI: 10.1186/s12985-016-0474-x
PubMed: 26833249
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pubmed:26833249Le document en format XML
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<author><name sortKey="Sipulwa, Lenata A" sort="Sipulwa, Lenata A" uniqKey="Sipulwa L" first="Lenata A" last="Sipulwa">Lenata A. Sipulwa</name>
<affiliation><nlm:affiliation>College of Health Sciences (COHES), Jomo Kenyatta University of Agriculture and Technology, (JKUAT), Nairobi, Kenya. lenata7@gmail.com.</nlm:affiliation>
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<author><name sortKey="Ongus, Juliette R" sort="Ongus, Juliette R" uniqKey="Ongus J" first="Juliette R" last="Ongus">Juliette R. Ongus</name>
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<author><name sortKey="Coldren, Rodney L" sort="Coldren, Rodney L" uniqKey="Coldren R" first="Rodney L" last="Coldren">Rodney L. Coldren</name>
<affiliation><nlm:affiliation>Department of Emerging Infectious Diseases, US Army Medical Research Unit-Kenya, P.O. Box 606 00621, Village Market, Nairobi, Kenya. Rodney.Coldren@usamru-k.org.</nlm:affiliation>
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<author><name sortKey="Bulimo, Wallace D" sort="Bulimo, Wallace D" uniqKey="Bulimo W" first="Wallace D" last="Bulimo">Wallace D. Bulimo</name>
<affiliation><nlm:affiliation>Department of Emerging Infectious Diseases, US Army Medical Research Unit-Kenya, P.O. Box 606 00621, Village Market, Nairobi, Kenya. Wallace.bulimo@uonbi.ac.ke.</nlm:affiliation>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Molecular characterization of human coronaviruses and their circulation dynamics in Kenya, 2009-2012.</title>
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<author><name sortKey="Ongus, Juliette R" sort="Ongus, Juliette R" uniqKey="Ongus J" first="Juliette R" last="Ongus">Juliette R. Ongus</name>
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<author><name sortKey="Coldren, Rodney L" sort="Coldren, Rodney L" uniqKey="Coldren R" first="Rodney L" last="Coldren">Rodney L. Coldren</name>
<affiliation><nlm:affiliation>Department of Emerging Infectious Diseases, US Army Medical Research Unit-Kenya, P.O. Box 606 00621, Village Market, Nairobi, Kenya. Rodney.Coldren@usamru-k.org.</nlm:affiliation>
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<author><name sortKey="Bulimo, Wallace D" sort="Bulimo, Wallace D" uniqKey="Bulimo W" first="Wallace D" last="Bulimo">Wallace D. Bulimo</name>
<affiliation><nlm:affiliation>Department of Emerging Infectious Diseases, US Army Medical Research Unit-Kenya, P.O. Box 606 00621, Village Market, Nairobi, Kenya. Wallace.bulimo@uonbi.ac.ke.</nlm:affiliation>
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<term>Coronavirus Infections (epidemiology)</term>
<term>Coronavirus Infections (history)</term>
<term>Coronavirus Infections (virology)</term>
<term>Genes, pol</term>
<term>History, 21st Century</term>
<term>Humans</term>
<term>Kenya (epidemiology)</term>
<term>Phylogeny</term>
<term>Population Surveillance</term>
<term>Prevalence</term>
<term>RNA, Viral</term>
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<keywords scheme="MESH" type="chemical" xml:lang="en"><term>RNA, Viral</term>
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<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Coronavirus Infections</term>
<term>Kenya</term>
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<keywords scheme="MESH" qualifier="history" xml:lang="en"><term>Coronavirus Infections</term>
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<term>History, 21st Century</term>
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<front><div type="abstract" xml:lang="en">Human Coronaviruses (HCoV) are a common cause of respiratory illnesses and are responsible for considerable morbidity and hospitalization across all age groups especially in individuals with compromised immunity. There are six known species of HCoV: HCoV-229E, HCoV-NL63, HCoV-HKU1, HCoV-OC43, MERS-CoV and SARS-HCoV. Although studies have shown evidence of global distribution of HCoVs, there is limited information on their presence and distribution in Kenya.</div>
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<Title>Virology journal</Title>
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<ArticleTitle>Molecular characterization of human coronaviruses and their circulation dynamics in Kenya, 2009-2012.</ArticleTitle>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Human Coronaviruses (HCoV) are a common cause of respiratory illnesses and are responsible for considerable morbidity and hospitalization across all age groups especially in individuals with compromised immunity. There are six known species of HCoV: HCoV-229E, HCoV-NL63, HCoV-HKU1, HCoV-OC43, MERS-CoV and SARS-HCoV. Although studies have shown evidence of global distribution of HCoVs, there is limited information on their presence and distribution in Kenya.</AbstractText>
<AbstractText Label="METHODS" NlmCategory="METHODS">HCoV strains that circulated in Kenya were retrospectively diagnosed and molecularly characterized. A total of 417 nasopharyngeal specimens obtained between January 2009 and December 2012 from around Kenya were analyzed by a real time RT-PCR using HCoV-specific primers. HCoV-positive specimens were subsequently inoculated onto monolayers of LL-CMK2 cells. The isolated viruses were characterized by RT-PCR amplification and sequencing of the partial polymerase (pol) gene.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">The prevalence of HCoV infection was as follows: out of the 417 specimens, 35 (8.4 %) were positive for HCoV, comprising 10 (2.4 %) HCoV-NL63, 12 (2.9 %) HCoV-OC43, 9 (2.1 %) HCoV-HKU1, and 4 (1 %) HCoV-229E. The Kenyan HCoV strains displayed high sequence homology to the prototypes and contemporaneous strains. Evolution analysis showed that the Kenyan HCoV-OC43 and HCoV-NL63 isolates were under purifying selection. Phylogenetic evolutionary analyses confirmed the identities of three HCoV-HKU1, five HCoV-NL63, eight HCoV-OC43 and three HCoV-229E.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">There were yearly variations in the prevalence and circulation patterns of individual HCoVs in Kenya. This paper reports on the first molecular characterization of human Coronaviruses in Kenya, which play an important role in causing acute respiratory infections among children.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sipulwa</LastName>
<ForeName>Lenata A</ForeName>
<Initials>LA</Initials>
<AffiliationInfo><Affiliation>College of Health Sciences (COHES), Jomo Kenyatta University of Agriculture and Technology, (JKUAT), Nairobi, Kenya. lenata7@gmail.com.</Affiliation>
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<Author ValidYN="Y"><LastName>Ongus</LastName>
<ForeName>Juliette R</ForeName>
<Initials>JR</Initials>
<AffiliationInfo><Affiliation>College of Health Sciences (COHES), Jomo Kenyatta University of Agriculture and Technology, (JKUAT), Nairobi, Kenya. julietteongus@jkuat.ac.ke.</Affiliation>
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<Author ValidYN="Y"><LastName>Coldren</LastName>
<ForeName>Rodney L</ForeName>
<Initials>RL</Initials>
<AffiliationInfo><Affiliation>Department of Emerging Infectious Diseases, US Army Medical Research Unit-Kenya, P.O. Box 606 00621, Village Market, Nairobi, Kenya. Rodney.Coldren@usamru-k.org.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Special Foreign Activity of the Walter Reed Army Institute of Research, Silver Spring, MD, USA. Rodney.Coldren@usamru-k.org.</Affiliation>
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<Author ValidYN="Y"><LastName>Bulimo</LastName>
<ForeName>Wallace D</ForeName>
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<AffiliationInfo><Affiliation>Department of Emerging Infectious Diseases, US Army Medical Research Unit-Kenya, P.O. Box 606 00621, Village Market, Nairobi, Kenya. Wallace.bulimo@uonbi.ac.ke.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Special Foreign Activity of the Walter Reed Army Institute of Research, Silver Spring, MD, USA. Wallace.bulimo@uonbi.ac.ke.</Affiliation>
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<AffiliationInfo><Affiliation>Department of Biochemistry, School of Medicine, University of Nairobi, Nairobi, Kenya. Wallace.bulimo@uonbi.ac.ke.</Affiliation>
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