Discovery and Characterization of Novel Bat Coronavirus Lineages from Kazakhstan.
Identifieur interne : 000912 ( PubMed/Corpus ); précédent : 000911; suivant : 000913Discovery and Characterization of Novel Bat Coronavirus Lineages from Kazakhstan.
Auteurs : Ian H. Mendenhall ; Aslan A. Kerimbayev ; Vitaliy M. Strochkov ; Kulyaisan T. Sultankulova ; Syrym K. Kopeyev ; Yvonne C F. Su ; Gavin J D. Smith ; Mukhit B. OrynbayevSource :
- Viruses [ 1999-4915 ] ; 2019.
English descriptors
- KwdEn :
- Alphacoronavirus (classification), Alphacoronavirus (genetics), Animals, Chiroptera (classification), Chiroptera (virology), Coronavirus Infections (transmission), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Disease Reservoirs (classification), Disease Reservoirs (veterinary), Disease Reservoirs (virology), Genetic Variation, Kazakhstan, Phylogeny, Phylogeography, RNA Replicase (genetics), RNA, Viral (genetics), Viral Proteins (genetics).
- MESH :
- chemical , genetics : RNA Replicase, RNA, Viral, Viral Proteins.
- geographic : Kazakhstan.
- classification : Alphacoronavirus, Chiroptera, Disease Reservoirs.
- genetics : Alphacoronavirus.
- transmission : Coronavirus Infections.
- veterinary : Coronavirus Infections, Disease Reservoirs.
- virology : Chiroptera, Coronavirus Infections, Disease Reservoirs.
- Animals, Genetic Variation, Phylogeny, Phylogeography.
Abstract
Coronaviruses are positive-stranded RNA viruses that infect a variety of hosts, resulting in a range of symptoms from gastrointestinal illness to respiratory distress. Bats are reservoirs for a high diversity of coronaviruses, and focused surveillance detected several strains genetically similar to MERS-coronavirus, SARS-coronavirus, and the human coronaviruses 229E and NL63. The bat fauna of central Asia, which link China to eastern Europe, are relatively less studied than other regions of the world. Kazakhstan is the world's ninth largest country; however, little is understood about the prevalence and diversity of bat-borne viruses. In this study, bat guano was collected from bat caves in three different sites of southern Kazakhstan that tested positive for coronaviruses. Our phylogenetic reconstruction indicates these are novel bat coronaviruses that belong to the genus Alphacoronavirus. In addition, two distinct lineages of Kazakhstan bat coronaviruses were detected. Both lineages are closely related to bat coronaviruses from China, France, Spain, and South Africa, suggesting that co-circulation of coronaviruses is common in multiple bat species with overlapping geographical distributions. Our study highlights the need for collaborative efforts in understudied countries to increase integrated surveillance capabilities toward better monitoring and detection of infectious diseases.
DOI: 10.3390/v11040356
PubMed: 30999711
Links to Exploration step
pubmed:30999711Le document en format XML
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Kerimbayev</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. aslan_kerim@mail.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Strochkov, Vitaliy M" sort="Strochkov, Vitaliy M" uniqKey="Strochkov V" first="Vitaliy M" last="Strochkov">Vitaliy M. Strochkov</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. vstrochkov@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Sultankulova, Kulyaisan T" sort="Sultankulova, Kulyaisan T" uniqKey="Sultankulova K" first="Kulyaisan T" last="Sultankulova">Kulyaisan T. Sultankulova</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. sultankul70@mail.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Kopeyev, Syrym K" sort="Kopeyev, Syrym K" uniqKey="Kopeyev S" first="Syrym K" last="Kopeyev">Syrym K. Kopeyev</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. kopeyev85@mail.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Su, Yvonne C F" sort="Su, Yvonne C F" uniqKey="Su Y" first="Yvonne C F" last="Su">Yvonne C F. 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Orynbayev</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. omb65@mail.ru.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:30999711</idno><idno type="pmid">30999711</idno><idno type="doi">10.3390/v11040356</idno><idno type="wicri:Area/PubMed/Corpus">000912</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000912</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Discovery and Characterization of Novel Bat Coronavirus Lineages from Kazakhstan.</title><author><name sortKey="Mendenhall, Ian H" sort="Mendenhall, Ian H" uniqKey="Mendenhall I" first="Ian H" last="Mendenhall">Ian H. Mendenhall</name><affiliation><nlm:affiliation>Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore. ian.mendenhall@duke-nus.edu.sg.</nlm:affiliation></affiliation></author><author><name sortKey="Kerimbayev, Aslan A" sort="Kerimbayev, Aslan A" uniqKey="Kerimbayev A" first="Aslan A" last="Kerimbayev">Aslan A. Kerimbayev</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. aslan_kerim@mail.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Strochkov, Vitaliy M" sort="Strochkov, Vitaliy M" uniqKey="Strochkov V" first="Vitaliy M" last="Strochkov">Vitaliy M. Strochkov</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. vstrochkov@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Sultankulova, Kulyaisan T" sort="Sultankulova, Kulyaisan T" uniqKey="Sultankulova K" first="Kulyaisan T" last="Sultankulova">Kulyaisan T. Sultankulova</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. sultankul70@mail.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Kopeyev, Syrym K" sort="Kopeyev, Syrym K" uniqKey="Kopeyev S" first="Syrym K" last="Kopeyev">Syrym K. Kopeyev</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. kopeyev85@mail.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Su, Yvonne C F" sort="Su, Yvonne C F" uniqKey="Su Y" first="Yvonne C F" last="Su">Yvonne C F. Su</name><affiliation><nlm:affiliation>Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore. yvonne.su@duke-nus.edu.sg.</nlm:affiliation></affiliation></author><author><name sortKey="Smith, Gavin J D" sort="Smith, Gavin J D" uniqKey="Smith G" first="Gavin J D" last="Smith">Gavin J D. Smith</name><affiliation><nlm:affiliation>Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore. gavin.smith@duke-nus.edu.sg.</nlm:affiliation></affiliation></author><author><name sortKey="Orynbayev, Mukhit B" sort="Orynbayev, Mukhit B" uniqKey="Orynbayev M" first="Mukhit B" last="Orynbayev">Mukhit B. Orynbayev</name><affiliation><nlm:affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. omb65@mail.ru.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Viruses</title><idno type="eISSN">1999-4915</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alphacoronavirus (classification)</term><term>Alphacoronavirus (genetics)</term><term>Animals</term><term>Chiroptera (classification)</term><term>Chiroptera (virology)</term><term>Coronavirus Infections (transmission)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Disease Reservoirs (classification)</term><term>Disease Reservoirs (veterinary)</term><term>Disease Reservoirs (virology)</term><term>Genetic Variation</term><term>Kazakhstan</term><term>Phylogeny</term><term>Phylogeography</term><term>RNA Replicase (genetics)</term><term>RNA, Viral (genetics)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term><term>RNA, Viral</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Kazakhstan</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Alphacoronavirus</term><term>Chiroptera</term><term>Disease Reservoirs</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Alphacoronavirus</term></keywords><keywords scheme="MESH" qualifier="transmission" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term><term>Disease Reservoirs</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term><term>Disease Reservoirs</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Phylogeny</term><term>Phylogeography</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Coronaviruses are positive-stranded RNA viruses that infect a variety of hosts, resulting in a range of symptoms from gastrointestinal illness to respiratory distress. Bats are reservoirs for a high diversity of coronaviruses, and focused surveillance detected several strains genetically similar to MERS-coronavirus, SARS-coronavirus, and the human coronaviruses 229E and NL63. The bat fauna of central Asia, which link China to eastern Europe, are relatively less studied than other regions of the world. Kazakhstan is the world's ninth largest country; however, little is understood about the prevalence and diversity of bat-borne viruses. In this study, bat guano was collected from bat caves in three different sites of southern Kazakhstan that tested positive for coronaviruses. Our phylogenetic reconstruction indicates these are novel bat coronaviruses that belong to the genus <i>Alphacoronavirus</i>. In addition, two distinct lineages of Kazakhstan bat coronaviruses were detected. Both lineages are closely related to bat coronaviruses from China, France, Spain, and South Africa, suggesting that co-circulation of coronaviruses is common in multiple bat species with overlapping geographical distributions. Our study highlights the need for collaborative efforts in understudied countries to increase integrated surveillance capabilities toward better monitoring and detection of infectious diseases.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30999711</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>20</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>20</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1999-4915</ISSN><JournalIssue CitedMedium="Internet"><Volume>11</Volume><Issue>4</Issue><PubDate><Year>2019</Year><Month>04</Month><Day>17</Day></PubDate></JournalIssue><Title>Viruses</Title><ISOAbbreviation>Viruses</ISOAbbreviation></Journal><ArticleTitle>Discovery and Characterization of Novel Bat Coronavirus Lineages from Kazakhstan.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E356</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/v11040356</ELocationID><Abstract><AbstractText>Coronaviruses are positive-stranded RNA viruses that infect a variety of hosts, resulting in a range of symptoms from gastrointestinal illness to respiratory distress. Bats are reservoirs for a high diversity of coronaviruses, and focused surveillance detected several strains genetically similar to MERS-coronavirus, SARS-coronavirus, and the human coronaviruses 229E and NL63. The bat fauna of central Asia, which link China to eastern Europe, are relatively less studied than other regions of the world. Kazakhstan is the world's ninth largest country; however, little is understood about the prevalence and diversity of bat-borne viruses. In this study, bat guano was collected from bat caves in three different sites of southern Kazakhstan that tested positive for coronaviruses. Our phylogenetic reconstruction indicates these are novel bat coronaviruses that belong to the genus <i>Alphacoronavirus</i>. In addition, two distinct lineages of Kazakhstan bat coronaviruses were detected. Both lineages are closely related to bat coronaviruses from China, France, Spain, and South Africa, suggesting that co-circulation of coronaviruses is common in multiple bat species with overlapping geographical distributions. Our study highlights the need for collaborative efforts in understudied countries to increase integrated surveillance capabilities toward better monitoring and detection of infectious diseases.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mendenhall</LastName><ForeName>Ian H</ForeName><Initials>IH</Initials><AffiliationInfo><Affiliation>Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore. ian.mendenhall@duke-nus.edu.sg.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kerimbayev</LastName><ForeName>Aslan A</ForeName><Initials>AA</Initials><AffiliationInfo><Affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. aslan_kerim@mail.ru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Strochkov</LastName><ForeName>Vitaliy M</ForeName><Initials>VM</Initials><AffiliationInfo><Affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. vstrochkov@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sultankulova</LastName><ForeName>Kulyaisan T</ForeName><Initials>KT</Initials><AffiliationInfo><Affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. sultankul70@mail.ru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kopeyev</LastName><ForeName>Syrym K</ForeName><Initials>SK</Initials><AffiliationInfo><Affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. kopeyev85@mail.ru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Su</LastName><ForeName>Yvonne C F</ForeName><Initials>YCF</Initials><AffiliationInfo><Affiliation>Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore. yvonne.su@duke-nus.edu.sg.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>Gavin J D</ForeName><Initials>GJD</Initials><AffiliationInfo><Affiliation>Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore. gavin.smith@duke-nus.edu.sg.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>SingHealth Duke-NUS Global Health Institute, SingHealth Duke-NUS Academic Medical Centre, Singapore 168753, Singapore. gavin.smith@duke-nus.edu.sg.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Duke Global Health Institute, Duke University, Durham, NC 27710, USA. gavin.smith@duke-nus.edu.sg.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Orynbayev</LastName><ForeName>Mukhit B</ForeName><Initials>MB</Initials><AffiliationInfo><Affiliation>Research Institute for Biological Safety Problems, 080409 Gvardeiskiy, Kordaiskiy rayon, Zhambylskaya oblast, Kazakhstan. omb65@mail.ru.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>04</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Viruses</MedlineTA><NlmUniqueID>101509722</NlmUniqueID><ISSNLinking>1999-4915</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014764">Viral Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.7.7.48</RegistryNumber><NameOfSubstance UI="D012324">RNA Replicase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000073638" MajorTopicYN="N">Alphacoronavirus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018352" MajorTopicYN="N">Coronavirus Infections</DescriptorName><QualifierName UI="Q000635" MajorTopicYN="N">transmission</QualifierName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004197" MajorTopicYN="N">Disease Reservoirs</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007623" MajorTopicYN="N" Type="Geographic">Kazakhstan</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012324" MajorTopicYN="N">RNA Replicase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Hypsugo savii</Keyword><Keyword MajorTopicYN="Y">Kazakhstan</Keyword><Keyword MajorTopicYN="Y">Myotis blythii</Keyword><Keyword MajorTopicYN="Y">coronavirus</Keyword><Keyword MajorTopicYN="Y">phylogeny</Keyword><Keyword MajorTopicYN="Y">virus discovery</Keyword></KeywordList><CoiStatement>The authors declare no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate 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