An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.
Identifieur interne : 000098 ( PubMed/Corpus ); précédent : 000097; suivant : 000099An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.
Auteurs : John-Sebastian Eden ; Rebecca Rockett ; Ian Carter ; Hossinur Rahman ; Joep De Ligt ; James Hadfield ; Matthew Storey ; Xiaoyun Ren ; Rachel Tulloch ; Kerri Basile ; Jessica Wells ; Roy Byun ; Nicky Gilroy ; Matthew V. O'Sullivan ; Vitali Sintchenko ; Sharon C. Chen ; Susan Maddocks ; Tania C. Sorrell ; Edward C. Holmes ; Dominic E. Dwyer ; Jen KokSource :
- Virus evolution [ 2057-1577 ] ; 2020.
Abstract
The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea, and Iran. Phylogenetic analyses of whole-genome sequencing data identified a distinct SARS-CoV-2 clade linked to travellers returning from Iran to Australia and New Zealand. This study highlights potential viral diversity driving the epidemic in Iran, and underscores the power of rapid genome sequencing and public data sharing to improve the detection and management of emerging infectious diseases.
DOI: 10.1093/ve/veaa027
PubMed: 32296544
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.</title><author><name sortKey="Eden, John Sebastian" sort="Eden, John Sebastian" uniqKey="Eden J" first="John-Sebastian" last="Eden">John-Sebastian Eden</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Rockett, Rebecca" sort="Rockett, Rebecca" uniqKey="Rockett R" first="Rebecca" last="Rockett">Rebecca Rockett</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Carter, Ian" sort="Carter, Ian" uniqKey="Carter I" first="Ian" last="Carter">Ian Carter</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Rahman, Hossinur" sort="Rahman, Hossinur" uniqKey="Rahman H" first="Hossinur" last="Rahman">Hossinur Rahman</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="De Ligt, Joep" sort="De Ligt, Joep" uniqKey="De Ligt J" first="Joep" last="De Ligt">Joep De Ligt</name><affiliation><nlm:affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Hadfield, James" sort="Hadfield, James" uniqKey="Hadfield J" first="James" last="Hadfield">James Hadfield</name><affiliation><nlm:affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Storey, Matthew" sort="Storey, Matthew" uniqKey="Storey M" first="Matthew" last="Storey">Matthew Storey</name><affiliation><nlm:affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Ren, Xiaoyun" sort="Ren, Xiaoyun" uniqKey="Ren X" first="Xiaoyun" last="Ren">Xiaoyun Ren</name><affiliation><nlm:affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Tulloch, Rachel" sort="Tulloch, Rachel" uniqKey="Tulloch R" first="Rachel" last="Tulloch">Rachel Tulloch</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Basile, Kerri" sort="Basile, Kerri" uniqKey="Basile K" first="Kerri" last="Basile">Kerri Basile</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Wells, Jessica" sort="Wells, Jessica" uniqKey="Wells J" first="Jessica" last="Wells">Jessica Wells</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Byun, Roy" sort="Byun, Roy" uniqKey="Byun R" first="Roy" last="Byun">Roy Byun</name><affiliation><nlm:affiliation>NSW Ministry of Health, North Sydney, NSW 2059, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Gilroy, Nicky" sort="Gilroy, Nicky" uniqKey="Gilroy N" first="Nicky" last="Gilroy">Nicky Gilroy</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="O Sullivan, Matthew V" sort="O Sullivan, Matthew V" uniqKey="O Sullivan M" first="Matthew V" last="O'Sullivan">Matthew V. O'Sullivan</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Sintchenko, Vitali" sort="Sintchenko, Vitali" uniqKey="Sintchenko V" first="Vitali" last="Sintchenko">Vitali Sintchenko</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Sharon C" sort="Chen, Sharon C" uniqKey="Chen S" first="Sharon C" last="Chen">Sharon C. Chen</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Maddocks, Susan" sort="Maddocks, Susan" uniqKey="Maddocks S" first="Susan" last="Maddocks">Susan Maddocks</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Sorrell, Tania C" sort="Sorrell, Tania C" uniqKey="Sorrell T" first="Tania C" last="Sorrell">Tania C. Sorrell</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Kok, Jen" sort="Kok, Jen" uniqKey="Kok J" first="Jen" last="Kok">Jen Kok</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32296544</idno><idno type="pmid">32296544</idno><idno type="doi">10.1093/ve/veaa027</idno><idno type="wicri:Area/PubMed/Corpus">000098</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000098</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.</title><author><name sortKey="Eden, John Sebastian" sort="Eden, John Sebastian" uniqKey="Eden J" first="John-Sebastian" last="Eden">John-Sebastian Eden</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Rockett, Rebecca" sort="Rockett, Rebecca" uniqKey="Rockett R" first="Rebecca" last="Rockett">Rebecca Rockett</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Carter, Ian" sort="Carter, Ian" uniqKey="Carter I" first="Ian" last="Carter">Ian Carter</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Rahman, Hossinur" sort="Rahman, Hossinur" uniqKey="Rahman H" first="Hossinur" last="Rahman">Hossinur Rahman</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="De Ligt, Joep" sort="De Ligt, Joep" uniqKey="De Ligt J" first="Joep" last="De Ligt">Joep De Ligt</name><affiliation><nlm:affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Hadfield, James" sort="Hadfield, James" uniqKey="Hadfield J" first="James" last="Hadfield">James Hadfield</name><affiliation><nlm:affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Storey, Matthew" sort="Storey, Matthew" uniqKey="Storey M" first="Matthew" last="Storey">Matthew Storey</name><affiliation><nlm:affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Ren, Xiaoyun" sort="Ren, Xiaoyun" uniqKey="Ren X" first="Xiaoyun" last="Ren">Xiaoyun Ren</name><affiliation><nlm:affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Tulloch, Rachel" sort="Tulloch, Rachel" uniqKey="Tulloch R" first="Rachel" last="Tulloch">Rachel Tulloch</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Basile, Kerri" sort="Basile, Kerri" uniqKey="Basile K" first="Kerri" last="Basile">Kerri Basile</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Wells, Jessica" sort="Wells, Jessica" uniqKey="Wells J" first="Jessica" last="Wells">Jessica Wells</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Byun, Roy" sort="Byun, Roy" uniqKey="Byun R" first="Roy" last="Byun">Roy Byun</name><affiliation><nlm:affiliation>NSW Ministry of Health, North Sydney, NSW 2059, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Gilroy, Nicky" sort="Gilroy, Nicky" uniqKey="Gilroy N" first="Nicky" last="Gilroy">Nicky Gilroy</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="O Sullivan, Matthew V" sort="O Sullivan, Matthew V" uniqKey="O Sullivan M" first="Matthew V" last="O'Sullivan">Matthew V. O'Sullivan</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Sintchenko, Vitali" sort="Sintchenko, Vitali" uniqKey="Sintchenko V" first="Vitali" last="Sintchenko">Vitali Sintchenko</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Sharon C" sort="Chen, Sharon C" uniqKey="Chen S" first="Sharon C" last="Chen">Sharon C. Chen</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Maddocks, Susan" sort="Maddocks, Susan" uniqKey="Maddocks S" first="Susan" last="Maddocks">Susan Maddocks</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Sorrell, Tania C" sort="Sorrell, Tania C" uniqKey="Sorrell T" first="Tania C" last="Sorrell">Tania C. Sorrell</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Kok, Jen" sort="Kok, Jen" uniqKey="Kok J" first="Jen" last="Kok">Jen Kok</name><affiliation><nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Virus evolution</title><idno type="ISSN">2057-1577</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea, and Iran. Phylogenetic analyses of whole-genome sequencing data identified a distinct SARS-CoV-2 clade linked to travellers returning from Iran to Australia and New Zealand. This study highlights potential viral diversity driving the epidemic in Iran, and underscores the power of rapid genome sequencing and public data sharing to improve the detection and management of emerging infectious diseases.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32296544</PMID><DateRevised><Year>2020</Year><Month>04</Month><Day>18</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2057-1577</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Virus evolution</Title><ISOAbbreviation>Virus Evol</ISOAbbreviation></Journal><ArticleTitle>An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.</ArticleTitle><Pagination><MedlinePgn>veaa027</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/ve/veaa027</ELocationID><Abstract><AbstractText>The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea, and Iran. Phylogenetic analyses of whole-genome sequencing data identified a distinct SARS-CoV-2 clade linked to travellers returning from Iran to Australia and New Zealand. This study highlights potential viral diversity driving the epidemic in Iran, and underscores the power of rapid genome sequencing and public data sharing to improve the detection and management of emerging infectious diseases.</AbstractText><CopyrightInformation>© The Author(s) 2020. Published by Oxford University Press.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Eden</LastName><ForeName>John-Sebastian</ForeName><Initials>JS</Initials><Identifier Source="ORCID">0000-0003-1374-3551</Identifier><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Virus Research & Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, PO Box 412, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rockett</LastName><ForeName>Rebecca</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Westmead Hospital, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carter</LastName><ForeName>Ian</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rahman</LastName><ForeName>Hossinur</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>de Ligt</LastName><ForeName>Joep</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hadfield</LastName><ForeName>James</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Storey</LastName><ForeName>Matthew</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ren</LastName><ForeName>Xiaoyun</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Institute of Environmental Science and Research, Porirua 5240, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tulloch</LastName><ForeName>Rachel</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Virus Research & Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, PO Box 412, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Basile</LastName><ForeName>Kerri</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wells</LastName><ForeName>Jessica</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Byun</LastName><ForeName>Roy</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>NSW Ministry of Health, North Sydney, NSW 2059, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gilroy</LastName><ForeName>Nicky</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>O'Sullivan</LastName><ForeName>Matthew V</ForeName><Initials>MV</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Westmead Hospital, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sintchenko</LastName><ForeName>Vitali</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Westmead Hospital, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Sharon C</ForeName><Initials>SC</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Westmead Hospital, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maddocks</LastName><ForeName>Susan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sorrell</LastName><ForeName>Tania C</ForeName><Initials>TC</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Virus Research & Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, PO Box 412, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Holmes</LastName><ForeName>Edward C</ForeName><Initials>EC</Initials><Identifier Source="ORCID">0000-0001-9596-3552</Identifier><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dwyer</LastName><ForeName>Dominic E</ForeName><Initials>DE</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences & School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Westmead Hospital, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kok</LastName><ForeName>Jen</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Westmead Hospital, Westmead, NSW 2145, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><CollectiveName>2019-nCoV Study Group </CollectiveName></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>04</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Virus Evol</MedlineTA><NlmUniqueID>101664675</NlmUniqueID><ISSNLinking>2057-1577</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">COVID-19</Keyword><Keyword MajorTopicYN="N">SARS-CoV-2</Keyword><Keyword MajorTopicYN="N">genome sequencing</Keyword><Keyword MajorTopicYN="N">phylogenetics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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IdType="pubmed">12136088</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Syst Biol. 2003 Oct;52(5):696-704</Citation><ArticleIdList><ArticleId IdType="pubmed">14530136</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Curr Infect Dis Rep. 2017 Apr;19(4):15</Citation><ArticleIdList><ArticleId IdType="pubmed">28281083</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Biol. 2019 Jan 8;20(1):8</Citation><ArticleIdList><ArticleId IdType="pubmed">30621750</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nature. 2020 Mar;579(7798):265-269</Citation><ArticleIdList><ArticleId IdType="pubmed">32015508</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>BMC Evol Biol. 2019 Dec 26;19(1):232</Citation><ArticleIdList><ArticleId IdType="pubmed">31878875</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Cell. 2018 Mar 8;172(6):1160-1162</Citation><ArticleIdList><ArticleId IdType="pubmed">29522736</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Lancet Infect Dis. 2020 Feb 19;:</Citation><ArticleIdList><ArticleId IdType="pubmed">32087114</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Cell. 2019 Aug 22;178(5):1057-1071.e11</Citation><ArticleIdList><ArticleId IdType="pubmed">31442400</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nature. 2017 Apr 20;544(7650):309-315</Citation><ArticleIdList><ArticleId IdType="pubmed">28405027</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Science. 2004 Jan 16;303(5656):327-32</Citation><ArticleIdList><ArticleId IdType="pubmed">14726583</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioinformatics. 2018 Dec 1;34(23):4121-4123</Citation><ArticleIdList><ArticleId IdType="pubmed">29790939</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Euro Surveill. 2017 Mar 30;22(13):</Citation><ArticleIdList><ArticleId IdType="pubmed">28382917</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Viruses. 2018 Sep 06;10(9):</Citation><ArticleIdList><ArticleId IdType="pubmed">30200580</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Microbiol. 2019 Jan;4(1):10-19</Citation><ArticleIdList><ArticleId IdType="pubmed">30546099</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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