Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa.
Identifieur interne : 003468 ( PubMed/Checkpoint ); précédent : 003467; suivant : 003469Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa.
Auteurs : V. Rougeron ; E. Suquet ; G D Maganga ; D. Jiolle ; I M Mombo ; M. Bourgarel ; P. Motsch ; C. Arnathau ; P. Durand ; F. Drexler ; C. Drosten ; F. Renaud ; F. Prugnolle ; E M LeroySource :
- Acta virologica [ 0001-723X ]
Descripteurs français
- KwdFr :
- MESH :
- génétique : Astroviridae.
- isolement et purification : Astroviridae.
- médecine vétérinaire : Infections à Astroviridae.
- virologie : Chiroptera, Infections à Astroviridae, Mammifères.
- Animaux, Astroviridae, Gabon, Humains, Phylogénie, Variation génétique.
English descriptors
- KwdEn :
- MESH :
- classification : Astroviridae.
- genetics : Astroviridae.
- isolation & purification : Astroviridae.
- veterinary : Astroviridae Infections.
- virology : Astroviridae Infections, Chiroptera, Mammals.
- Animals, Gabon, Genetic Variation, Humans, Phylogeny.
Abstract
Astroviruses are emerging RNA viruses that cause enteropathogenic infections in humans and in other mammals. The identification of astroviruses in a wide range of animals highlights the zoonotic importance of these viruses. Bats can harbor many different viruses, among which some are highly pathogenic for humans (for instance, Nipah, Ebola and SARS coronavirus), and also several astroviruses. As some RNA viruses can be directly transmitted from bats to humans, it is crucial to collect data about their frequency, genetic diversity and phylogenetic characterization. In this study, we report the molecular identification of 44 new astroviruses (with a detection rate of 4.5%) in 962 apparently healthy bats that belong to five different species and that were captured in different caves in North-East Gabon, Central Africa. Our results show that bat astroviruses form a group that is genetically distinct from astroviruses infecting other mammals. Moreover, these astroviruses showed an important genetic diversity and low host restriction in bat species.
DOI: 10.4149/av_2016_04_386
PubMed: 27928918
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
pubmed:27928918Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa.</title>
<author><name sortKey="Rougeron, V" sort="Rougeron, V" uniqKey="Rougeron V" first="V" last="Rougeron">V. Rougeron</name>
</author>
<author><name sortKey="Suquet, E" sort="Suquet, E" uniqKey="Suquet E" first="E" last="Suquet">E. Suquet</name>
</author>
<author><name sortKey="Maganga, G D" sort="Maganga, G D" uniqKey="Maganga G" first="G D" last="Maganga">G D Maganga</name>
</author>
<author><name sortKey="Jiolle, D" sort="Jiolle, D" uniqKey="Jiolle D" first="D" last="Jiolle">D. Jiolle</name>
</author>
<author><name sortKey="Mombo, I M" sort="Mombo, I M" uniqKey="Mombo I" first="I M" last="Mombo">I M Mombo</name>
</author>
<author><name sortKey="Bourgarel, M" sort="Bourgarel, M" uniqKey="Bourgarel M" first="M" last="Bourgarel">M. Bourgarel</name>
</author>
<author><name sortKey="Motsch, P" sort="Motsch, P" uniqKey="Motsch P" first="P" last="Motsch">P. Motsch</name>
</author>
<author><name sortKey="Arnathau, C" sort="Arnathau, C" uniqKey="Arnathau C" first="C" last="Arnathau">C. Arnathau</name>
</author>
<author><name sortKey="Durand, P" sort="Durand, P" uniqKey="Durand P" first="P" last="Durand">P. Durand</name>
</author>
<author><name sortKey="Drexler, F" sort="Drexler, F" uniqKey="Drexler F" first="F" last="Drexler">F. Drexler</name>
</author>
<author><name sortKey="Drosten, C" sort="Drosten, C" uniqKey="Drosten C" first="C" last="Drosten">C. Drosten</name>
</author>
<author><name sortKey="Renaud, F" sort="Renaud, F" uniqKey="Renaud F" first="F" last="Renaud">F. Renaud</name>
</author>
<author><name sortKey="Prugnolle, F" sort="Prugnolle, F" uniqKey="Prugnolle F" first="F" last="Prugnolle">F. Prugnolle</name>
</author>
<author><name sortKey="Leroy, E M" sort="Leroy, E M" uniqKey="Leroy E" first="E M" last="Leroy">E M Leroy</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="????"><PubDate><MedlineDate>2016</MedlineDate>
</PubDate>
</date>
<idno type="RBID">pubmed:27928918</idno>
<idno type="pmid">27928918</idno>
<idno type="doi">10.4149/av_2016_04_386</idno>
<idno type="wicri:Area/PubMed/Corpus">000B81</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000B81</idno>
<idno type="wicri:Area/PubMed/Curation">000B81</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000B81</idno>
<idno type="wicri:Area/PubMed/Checkpoint">003468</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">003468</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa.</title>
<author><name sortKey="Rougeron, V" sort="Rougeron, V" uniqKey="Rougeron V" first="V" last="Rougeron">V. Rougeron</name>
</author>
<author><name sortKey="Suquet, E" sort="Suquet, E" uniqKey="Suquet E" first="E" last="Suquet">E. Suquet</name>
</author>
<author><name sortKey="Maganga, G D" sort="Maganga, G D" uniqKey="Maganga G" first="G D" last="Maganga">G D Maganga</name>
</author>
<author><name sortKey="Jiolle, D" sort="Jiolle, D" uniqKey="Jiolle D" first="D" last="Jiolle">D. Jiolle</name>
</author>
<author><name sortKey="Mombo, I M" sort="Mombo, I M" uniqKey="Mombo I" first="I M" last="Mombo">I M Mombo</name>
</author>
<author><name sortKey="Bourgarel, M" sort="Bourgarel, M" uniqKey="Bourgarel M" first="M" last="Bourgarel">M. Bourgarel</name>
</author>
<author><name sortKey="Motsch, P" sort="Motsch, P" uniqKey="Motsch P" first="P" last="Motsch">P. Motsch</name>
</author>
<author><name sortKey="Arnathau, C" sort="Arnathau, C" uniqKey="Arnathau C" first="C" last="Arnathau">C. Arnathau</name>
</author>
<author><name sortKey="Durand, P" sort="Durand, P" uniqKey="Durand P" first="P" last="Durand">P. Durand</name>
</author>
<author><name sortKey="Drexler, F" sort="Drexler, F" uniqKey="Drexler F" first="F" last="Drexler">F. Drexler</name>
</author>
<author><name sortKey="Drosten, C" sort="Drosten, C" uniqKey="Drosten C" first="C" last="Drosten">C. Drosten</name>
</author>
<author><name sortKey="Renaud, F" sort="Renaud, F" uniqKey="Renaud F" first="F" last="Renaud">F. Renaud</name>
</author>
<author><name sortKey="Prugnolle, F" sort="Prugnolle, F" uniqKey="Prugnolle F" first="F" last="Prugnolle">F. Prugnolle</name>
</author>
<author><name sortKey="Leroy, E M" sort="Leroy, E M" uniqKey="Leroy E" first="E M" last="Leroy">E M Leroy</name>
</author>
</analytic>
<series><title level="j">Acta virologica</title>
<idno type="ISSN">0001-723X</idno>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Astroviridae (classification)</term>
<term>Astroviridae (genetics)</term>
<term>Astroviridae (isolation & purification)</term>
<term>Astroviridae Infections (veterinary)</term>
<term>Astroviridae Infections (virology)</term>
<term>Chiroptera (virology)</term>
<term>Gabon</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Mammals (virology)</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term>
<term>Astroviridae ()</term>
<term>Astroviridae (génétique)</term>
<term>Astroviridae (isolement et purification)</term>
<term>Chiroptera (virologie)</term>
<term>Gabon</term>
<term>Humains</term>
<term>Infections à Astroviridae (médecine vétérinaire)</term>
<term>Infections à Astroviridae (virologie)</term>
<term>Mammifères (virologie)</term>
<term>Phylogénie</term>
<term>Variation génétique</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Astroviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Astroviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Astroviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Astroviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Astroviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à Astroviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Astroviridae Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term>
<term>Infections à Astroviridae</term>
<term>Mammifères</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Astroviridae Infections</term>
<term>Chiroptera</term>
<term>Mammals</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Gabon</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Astroviridae</term>
<term>Gabon</term>
<term>Humains</term>
<term>Phylogénie</term>
<term>Variation génétique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Astroviruses are emerging RNA viruses that cause enteropathogenic infections in humans and in other mammals. The identification of astroviruses in a wide range of animals highlights the zoonotic importance of these viruses. Bats can harbor many different viruses, among which some are highly pathogenic for humans (for instance, Nipah, Ebola and SARS coronavirus), and also several astroviruses. As some RNA viruses can be directly transmitted from bats to humans, it is crucial to collect data about their frequency, genetic diversity and phylogenetic characterization. In this study, we report the molecular identification of 44 new astroviruses (with a detection rate of 4.5%) in 962 apparently healthy bats that belong to five different species and that were captured in different caves in North-East Gabon, Central Africa. Our results show that bat astroviruses form a group that is genetically distinct from astroviruses infecting other mammals. Moreover, these astroviruses showed an important genetic diversity and low host restriction in bat species.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27928918</PMID>
<DateCompleted><Year>2017</Year>
<Month>06</Month>
<Day>27</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Print">0001-723X</ISSN>
<JournalIssue CitedMedium="Print"><Volume>60</Volume>
<Issue>4</Issue>
<PubDate><MedlineDate>2016</MedlineDate>
</PubDate>
</JournalIssue>
<Title>Acta virologica</Title>
<ISOAbbreviation>Acta Virol.</ISOAbbreviation>
</Journal>
<ArticleTitle>Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa.</ArticleTitle>
<Pagination><MedlinePgn>386-392</MedlinePgn>
</Pagination>
<Abstract><AbstractText>Astroviruses are emerging RNA viruses that cause enteropathogenic infections in humans and in other mammals. The identification of astroviruses in a wide range of animals highlights the zoonotic importance of these viruses. Bats can harbor many different viruses, among which some are highly pathogenic for humans (for instance, Nipah, Ebola and SARS coronavirus), and also several astroviruses. As some RNA viruses can be directly transmitted from bats to humans, it is crucial to collect data about their frequency, genetic diversity and phylogenetic characterization. In this study, we report the molecular identification of 44 new astroviruses (with a detection rate of 4.5%) in 962 apparently healthy bats that belong to five different species and that were captured in different caves in North-East Gabon, Central Africa. Our results show that bat astroviruses form a group that is genetically distinct from astroviruses infecting other mammals. Moreover, these astroviruses showed an important genetic diversity and low host restriction in bat species.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rougeron</LastName>
<ForeName>V</ForeName>
<Initials>V</Initials>
</Author>
<Author ValidYN="Y"><LastName>Suquet</LastName>
<ForeName>E</ForeName>
<Initials>E</Initials>
</Author>
<Author ValidYN="Y"><LastName>Maganga</LastName>
<ForeName>G D</ForeName>
<Initials>GD</Initials>
</Author>
<Author ValidYN="Y"><LastName>Jiolle</LastName>
<ForeName>D</ForeName>
<Initials>D</Initials>
</Author>
<Author ValidYN="Y"><LastName>Mombo</LastName>
<ForeName>I M</ForeName>
<Initials>IM</Initials>
</Author>
<Author ValidYN="Y"><LastName>Bourgarel</LastName>
<ForeName>M</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Motsch</LastName>
<ForeName>P</ForeName>
<Initials>P</Initials>
</Author>
<Author ValidYN="Y"><LastName>Arnathau</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
</Author>
<Author ValidYN="Y"><LastName>Durand</LastName>
<ForeName>P</ForeName>
<Initials>P</Initials>
</Author>
<Author ValidYN="Y"><LastName>Drexler</LastName>
<ForeName>F</ForeName>
<Initials>F</Initials>
</Author>
<Author ValidYN="Y"><LastName>Drosten</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
</Author>
<Author ValidYN="Y"><LastName>Renaud</LastName>
<ForeName>F</ForeName>
<Initials>F</Initials>
</Author>
<Author ValidYN="Y"><LastName>Prugnolle</LastName>
<ForeName>F</ForeName>
<Initials>F</Initials>
</Author>
<Author ValidYN="Y"><LastName>Leroy</LastName>
<ForeName>E M</ForeName>
<Initials>EM</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>Slovakia</Country>
<MedlineTA>Acta Virol</MedlineTA>
<NlmUniqueID>0370401</NlmUniqueID>
<ISSNLinking>0001-723X</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D019200" MajorTopicYN="N">Astroviridae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D019350" MajorTopicYN="N">Astroviridae Infections</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005681" MajorTopicYN="N">Gabon</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008322" MajorTopicYN="N">Mammals</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">bat; astroviruses; Gabon; host restriction; genetic diversity.</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2016</Year>
<Month>12</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2016</Year>
<Month>12</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>6</Month>
<Day>28</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">27928918</ArticleId>
<ArticleId IdType="doi">10.4149/av_2016_04_386</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list></list>
<tree><noCountry><name sortKey="Arnathau, C" sort="Arnathau, C" uniqKey="Arnathau C" first="C" last="Arnathau">C. Arnathau</name>
<name sortKey="Bourgarel, M" sort="Bourgarel, M" uniqKey="Bourgarel M" first="M" last="Bourgarel">M. Bourgarel</name>
<name sortKey="Drexler, F" sort="Drexler, F" uniqKey="Drexler F" first="F" last="Drexler">F. Drexler</name>
<name sortKey="Drosten, C" sort="Drosten, C" uniqKey="Drosten C" first="C" last="Drosten">C. Drosten</name>
<name sortKey="Durand, P" sort="Durand, P" uniqKey="Durand P" first="P" last="Durand">P. Durand</name>
<name sortKey="Jiolle, D" sort="Jiolle, D" uniqKey="Jiolle D" first="D" last="Jiolle">D. Jiolle</name>
<name sortKey="Leroy, E M" sort="Leroy, E M" uniqKey="Leroy E" first="E M" last="Leroy">E M Leroy</name>
<name sortKey="Maganga, G D" sort="Maganga, G D" uniqKey="Maganga G" first="G D" last="Maganga">G D Maganga</name>
<name sortKey="Mombo, I M" sort="Mombo, I M" uniqKey="Mombo I" first="I M" last="Mombo">I M Mombo</name>
<name sortKey="Motsch, P" sort="Motsch, P" uniqKey="Motsch P" first="P" last="Motsch">P. Motsch</name>
<name sortKey="Prugnolle, F" sort="Prugnolle, F" uniqKey="Prugnolle F" first="F" last="Prugnolle">F. Prugnolle</name>
<name sortKey="Renaud, F" sort="Renaud, F" uniqKey="Renaud F" first="F" last="Renaud">F. Renaud</name>
<name sortKey="Rougeron, V" sort="Rougeron, V" uniqKey="Rougeron V" first="V" last="Rougeron">V. Rougeron</name>
<name sortKey="Suquet, E" sort="Suquet, E" uniqKey="Suquet E" first="E" last="Suquet">E. Suquet</name>
</noCountry>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003468 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd -nk 003468 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= SrasV1 |flux= PubMed |étape= Checkpoint |type= RBID |clé= pubmed:27928918 |texte= Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/RBID.i -Sk "pubmed:27928918" \ | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd \ | NlmPubMed2Wicri -a SrasV1
![]() | This area was generated with Dilib version V0.6.33. | ![]() |