Structural organization of the genome of SARS-associated coronavirus (Strain SoD) isolated on the territory of the Russian Federation.
Identifieur interne : 002A14 ( PubMed/Checkpoint ); précédent : 002A13; suivant : 002A15Structural organization of the genome of SARS-associated coronavirus (Strain SoD) isolated on the territory of the Russian Federation.
Auteurs : G G Onishchenko [Russie] ; V M Govorun ; V I Sergienko ; T A Akopian ; K T Momynaliev ; V A Vereshchagin ; V N Lazarev ; N T Vasilev ; V I Markov ; V A Merkulov ; V A Maksimov ; V A Melnikov ; Yu M. LopukhinSource :
- Bulletin of experimental biology and medicine [ 0007-4888 ] ; 2004.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ADN complémentaire, ADN viral, Virus du SRAS.
- isolement et purification : Virus du SRAS.
- virologie : Syndrome respiratoire aigu sévère.
- Génome viral, Humains, Phylogénie, Russie, Réaction de polymérisation en chaîne, Substitution d'acide aminé, Virus du SRAS.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Complementary, DNA, Viral.
- geographic : Russia.
- classification : SARS Virus.
- genetics : SARS Virus.
- isolation & purification : SARS Virus.
- virology : Severe Acute Respiratory Syndrome.
- Amino Acid Substitution, Genome, Viral, Humans, Phylogeny, Polymerase Chain Reaction.
Abstract
Complete nucleotide cDNA sequence (29715 nucleotides) of SARS-associated coronavirus (strain SoD) isolated for the first time in the territory of the Russian Federation was determined. Phylogenetic analysis revealed maximum similarity between strain SoD genome and Frankfurt 1 strain genome. Three nucleotide substitutions determining two amino acid substitutions were detected.
DOI: 10.1023/b:bebm.0000028139.02582.97
PubMed: 15273774
Affiliations:
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Lopukhin</name></author></analytic><series><title level="j">Bulletin of experimental biology and medicine</title><idno type="ISSN">0007-4888</idno><imprint><date when="2004" type="published">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Substitution</term><term>DNA, Complementary (genetics)</term><term>DNA, Viral (genetics)</term><term>Genome, Viral</term><term>Humans</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Russia</term><term>SARS Virus (classification)</term><term>SARS Virus (genetics)</term><term>SARS Virus (isolation & purification)</term><term>Severe Acute Respiratory Syndrome (virology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire (génétique)</term><term>ADN viral (génétique)</term><term>Génome viral</term><term>Humains</term><term>Phylogénie</term><term>Russie</term><term>Réaction de polymérisation en chaîne</term><term>Substitution d'acide aminé</term><term>Syndrome respiratoire aigu sévère (virologie)</term><term>Virus du SRAS ()</term><term>Virus du SRAS (génétique)</term><term>Virus du SRAS (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Complementary</term><term>DNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Russia</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN complémentaire</term><term>ADN viral</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Substitution</term><term>Genome, Viral</term><term>Humans</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génome viral</term><term>Humains</term><term>Phylogénie</term><term>Russie</term><term>Réaction de polymérisation en chaîne</term><term>Substitution d'acide aminé</term><term>Virus du SRAS</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Complete nucleotide cDNA sequence (29715 nucleotides) of SARS-associated coronavirus (strain SoD) isolated for the first time in the territory of the Russian Federation was determined. Phylogenetic analysis revealed maximum similarity between strain SoD genome and Frankfurt 1 strain genome. Three nucleotide substitutions determining two amino acid substitutions were detected.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15273774</PMID><DateCompleted><Year>2004</Year><Month>10</Month><Day>18</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>25</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0007-4888</ISSN><JournalIssue CitedMedium="Print"><Volume>137</Volume><Issue>2</Issue><PubDate><Year>2004</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Bulletin of experimental biology and medicine</Title><ISOAbbreviation>Bull. Exp. Biol. Med.</ISOAbbreviation></Journal><ArticleTitle>Structural organization of the genome of SARS-associated coronavirus (Strain SoD) isolated on the territory of the Russian Federation.</ArticleTitle><Pagination><MedlinePgn>197-9</MedlinePgn></Pagination><Abstract><AbstractText>Complete nucleotide cDNA sequence (29715 nucleotides) of SARS-associated coronavirus (strain SoD) isolated for the first time in the territory of the Russian Federation was determined. Phylogenetic analysis revealed maximum similarity between strain SoD genome and Frankfurt 1 strain genome. Three nucleotide substitutions determining two amino acid substitutions were detected.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Onishchenko</LastName><ForeName>G G</ForeName><Initials>GG</Initials><AffiliationInfo><Affiliation>State Institute of Physico-Chemical Medicine, Ministry of Health of Russian Federation, Moscow, Russia. pathol@cyber.ma.nsc</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Govorun</LastName><ForeName>V M</ForeName><Initials>VM</Initials></Author><Author ValidYN="Y"><LastName>Sergienko</LastName><ForeName>V I</ForeName><Initials>VI</Initials></Author><Author ValidYN="Y"><LastName>Akopian</LastName><ForeName>T A</ForeName><Initials>TA</Initials></Author><Author ValidYN="Y"><LastName>Momynaliev</LastName><ForeName>K T</ForeName><Initials>KT</Initials></Author><Author ValidYN="Y"><LastName>Vereshchagin</LastName><ForeName>V A</ForeName><Initials>VA</Initials></Author><Author ValidYN="Y"><LastName>Lazarev</LastName><ForeName>V N</ForeName><Initials>VN</Initials></Author><Author ValidYN="Y"><LastName>Vasilev</LastName><ForeName>N T</ForeName><Initials>NT</Initials></Author><Author ValidYN="Y"><LastName>Markov</LastName><ForeName>V I</ForeName><Initials>VI</Initials></Author><Author ValidYN="Y"><LastName>Merkulov</LastName><ForeName>V A</ForeName><Initials>VA</Initials></Author><Author ValidYN="Y"><LastName>Maksimov</LastName><ForeName>V A</ForeName><Initials>VA</Initials></Author><Author ValidYN="Y"><LastName>Melnikov</LastName><ForeName>V A</ForeName><Initials>VA</Initials></Author><Author ValidYN="Y"><LastName>Lopukhin</LastName><ForeName>Yu M</ForeName><Initials>YM</Initials></Author></AuthorList><Language>eng</Language><Language>rus</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Bull Exp Biol Med</MedlineTA><NlmUniqueID>0372557</NlmUniqueID><ISSNLinking>0007-4888</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018076">DNA, Complementary</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004279">DNA, Viral</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D019943" MajorTopicYN="N">Amino Acid Substitution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018076" MajorTopicYN="N">DNA, Complementary</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="Y">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016133" MajorTopicYN="N">Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012426" MajorTopicYN="N" Type="Geographic">Russia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045473" MajorTopicYN="N">SARS Virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045169" MajorTopicYN="N">Severe Acute Respiratory Syndrome</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2004</Year><Month>7</Month><Day>27</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2004</Year><Month>10</Month><Day>19</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2004</Year><Month>7</Month><Day>27</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">15273774</ArticleId><ArticleId IdType="pii">doi</ArticleId><ArticleId IdType="doi">10.1023/b:bebm.0000028139.02582.97</ArticleId><ArticleId IdType="pmc">PMC7087746</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Science. 2003 May 30;300(5624):1394-9</Citation><ArticleIdList><ArticleId IdType="pubmed">12730500</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Science. 2003 May 30;300(5624):1399-404</Citation><ArticleIdList><ArticleId IdType="pubmed">12730501</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Russie</li></country><region><li>District fédéral central</li></region><settlement><li>Moscou</li></settlement></list><tree><noCountry><name sortKey="Akopian, T A" sort="Akopian, T A" uniqKey="Akopian T" first="T A" last="Akopian">T A Akopian</name><name sortKey="Govorun, V M" sort="Govorun, V M" uniqKey="Govorun V" first="V M" last="Govorun">V M Govorun</name><name sortKey="Lazarev, V N" sort="Lazarev, V N" uniqKey="Lazarev V" first="V N" last="Lazarev">V N Lazarev</name><name sortKey="Lopukhin, Yu M" sort="Lopukhin, Yu M" uniqKey="Lopukhin Y" first="Yu M" last="Lopukhin">Yu M. Lopukhin</name><name sortKey="Maksimov, V A" sort="Maksimov, V A" uniqKey="Maksimov V" first="V A" last="Maksimov">V A Maksimov</name><name sortKey="Markov, V I" sort="Markov, V I" uniqKey="Markov V" first="V I" last="Markov">V I Markov</name><name sortKey="Melnikov, V A" sort="Melnikov, V A" uniqKey="Melnikov V" first="V A" last="Melnikov">V A Melnikov</name><name sortKey="Merkulov, V A" sort="Merkulov, V A" uniqKey="Merkulov V" first="V A" last="Merkulov">V A Merkulov</name><name sortKey="Momynaliev, K T" sort="Momynaliev, K T" uniqKey="Momynaliev K" first="K T" last="Momynaliev">K T Momynaliev</name><name sortKey="Sergienko, V I" sort="Sergienko, V I" uniqKey="Sergienko V" first="V I" last="Sergienko">V I Sergienko</name><name sortKey="Vasilev, N T" sort="Vasilev, N T" uniqKey="Vasilev N" first="N T" last="Vasilev">N T Vasilev</name><name sortKey="Vereshchagin, V A" sort="Vereshchagin, V A" uniqKey="Vereshchagin V" first="V A" last="Vereshchagin">V A Vereshchagin</name></noCountry><country name="Russie"><region name="District fédéral central"><name sortKey="Onishchenko, G G" sort="Onishchenko, G G" uniqKey="Onishchenko G" first="G G" last="Onishchenko">G G Onishchenko</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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