Evolutionary insights into the ecology of coronaviruses.
Identifieur interne : 001E15 ( PubMed/Checkpoint ); précédent : 001E14; suivant : 001E16Evolutionary insights into the ecology of coronaviruses.
Auteurs : D. Vijaykrishna [République populaire de Chine] ; G J D. Smith ; J X Zhang ; J S M. Peiris ; H. Chen ; Y. GuanSource :
- Journal of virology [ 0022-538X ] ; 2007.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence d'ADN, Animaux, Biodiversité, Bovins, Chats, Chiroptera (virologie), Coronaviridae (), Coronaviridae (génétique), Coronaviridae (isolement et purification), Coronaviridae (physiologie), Données de séquences moléculaires, Humains, Infections à Coronaviridae (médecine vétérinaire), Infections à Coronaviridae (transmission), Infections à Coronaviridae (virologie), Oiseaux (virologie), Phylogénie, Rectum (virologie), Réservoirs d'agents pathogènes (virologie), Similitude de séquences, Séquence nucléotidique, Viverridae (virologie), Écosystème, Évolution moléculaire.
- MESH :
- génétique : ARN viral, Coronaviridae.
- isolement et purification : Coronaviridae.
- médecine vétérinaire : Infections à Coronaviridae.
- physiologie : Coronaviridae.
- virologie : Chiroptera, Infections à Coronaviridae, Oiseaux, Rectum, Réservoirs d'agents pathogènes, Viverridae.
- Analyse de séquence d'ADN, Animaux, Biodiversité, Bovins, Chats, Coronaviridae, Données de séquences moléculaires, Humains, Infections à Coronaviridae, Phylogénie, Similitude de séquences, Séquence nucléotidique, Écosystème, Évolution moléculaire.
English descriptors
- KwdEn :
- Animals, Base Sequence, Biodiversity, Birds (virology), Cats, Cattle, Chiroptera (virology), Coronaviridae (classification), Coronaviridae (genetics), Coronaviridae (isolation & purification), Coronaviridae (physiology), Coronaviridae Infections (transmission), Coronaviridae Infections (veterinary), Coronaviridae Infections (virology), Disease Reservoirs (virology), Ecosystem, Evolution, Molecular, Humans, Molecular Sequence Data, Phylogeny, RNA, Viral (genetics), Rectum (virology), Sequence Analysis, DNA, Sequence Homology, Viverridae (virology).
- MESH :
- chemical , genetics : RNA, Viral.
- classification : Coronaviridae.
- genetics : Coronaviridae.
- isolation & purification : Coronaviridae.
- physiology : Coronaviridae.
- transmission : Coronaviridae Infections.
- veterinary : Coronaviridae Infections.
- virology : Birds, Chiroptera, Coronaviridae Infections, Disease Reservoirs, Rectum, Viverridae.
- Animals, Base Sequence, Biodiversity, Cats, Cattle, Ecosystem, Evolution, Molecular, Humans, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Sequence Homology.
Abstract
Although many novel members of the Coronaviridae have recently been recognized in different species, the ecology of coronaviruses has not been established. Our study indicates that bats harbor a much wider diversity of coronaviruses than any other animal species. Dating of different coronavirus lineages suggests that bat coronaviruses are older than those recognized in other animals and that the human severe acute respiratory syndrome (SARS) coronavirus was directly derived from viruses from wild animals in wet markets of southern China. Furthermore, the most closely related bat and SARS coronaviruses diverged in 1986, an estimated divergence time of 17 years prior to the outbreak, suggesting that there may have been transmission via an unknown intermediate host. Analysis of lineage-specific selection pressure also indicated that only SARS coronaviruses in civets and humans were under significant positive selection, also demonstrating a recent interspecies transmission. Analysis of population dynamics revealed that coronavirus populations in bats have constant population growth, while viruses from all other hosts show epidemic-like increases in population. These results indicate that diverse coronaviruses are endemic in different bat species, with repeated introductions to other animals and occasional establishment in other species. Our findings suggest that bats are likely the natural hosts for all presently known coronavirus lineages and that all coronaviruses recognized in other species were derived from viruses residing in bats. Further surveillance of bat and other animal populations is needed to fully describe the ecology and evolution of this virus family.
DOI: 10.1128/JVI.02605-06
PubMed: 17267506
Affiliations:
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pubmed:17267506Le document en format XML
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Our study indicates that bats harbor a much wider diversity of coronaviruses than any other animal species. Dating of different coronavirus lineages suggests that bat coronaviruses are older than those recognized in other animals and that the human severe acute respiratory syndrome (SARS) coronavirus was directly derived from viruses from wild animals in wet markets of southern China. Furthermore, the most closely related bat and SARS coronaviruses diverged in 1986, an estimated divergence time of 17 years prior to the outbreak, suggesting that there may have been transmission via an unknown intermediate host. Analysis of lineage-specific selection pressure also indicated that only SARS coronaviruses in civets and humans were under significant positive selection, also demonstrating a recent interspecies transmission. Analysis of population dynamics revealed that coronavirus populations in bats have constant population growth, while viruses from all other hosts show epidemic-like increases in population. These results indicate that diverse coronaviruses are endemic in different bat species, with repeated introductions to other animals and occasional establishment in other species. Our findings suggest that bats are likely the natural hosts for all presently known coronavirus lineages and that all coronaviruses recognized in other species were derived from viruses residing in bats. Further surveillance of bat and other animal populations is needed to fully describe the ecology and evolution of this virus family.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17267506</PMID><DateCompleted><Year>2007</Year><Month>05</Month><Day>18</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0022-538X</ISSN><JournalIssue CitedMedium="Print"><Volume>81</Volume><Issue>8</Issue><PubDate><Year>2007</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Journal of virology</Title><ISOAbbreviation>J. Virol.</ISOAbbreviation></Journal><ArticleTitle>Evolutionary insights into the ecology of coronaviruses.</ArticleTitle><Pagination><MedlinePgn>4012-20</MedlinePgn></Pagination><Abstract><AbstractText>Although many novel members of the Coronaviridae have recently been recognized in different species, the ecology of coronaviruses has not been established. Our study indicates that bats harbor a much wider diversity of coronaviruses than any other animal species. Dating of different coronavirus lineages suggests that bat coronaviruses are older than those recognized in other animals and that the human severe acute respiratory syndrome (SARS) coronavirus was directly derived from viruses from wild animals in wet markets of southern China. Furthermore, the most closely related bat and SARS coronaviruses diverged in 1986, an estimated divergence time of 17 years prior to the outbreak, suggesting that there may have been transmission via an unknown intermediate host. Analysis of lineage-specific selection pressure also indicated that only SARS coronaviruses in civets and humans were under significant positive selection, also demonstrating a recent interspecies transmission. Analysis of population dynamics revealed that coronavirus populations in bats have constant population growth, while viruses from all other hosts show epidemic-like increases in population. These results indicate that diverse coronaviruses are endemic in different bat species, with repeated introductions to other animals and occasional establishment in other species. Our findings suggest that bats are likely the natural hosts for all presently known coronavirus lineages and that all coronaviruses recognized in other species were derived from viruses residing in bats. Further surveillance of bat and other animal populations is needed to fully describe the ecology and evolution of this virus family.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vijaykrishna</LastName><ForeName>D</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Emerging Infectious Diseases, Department of Microbiology, The University of Hong Kong, Li Ka Shing Faculty of Medicine Building, 21 Sassoon Road, Pokfulam, Hong Kong SAR, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>G J D</ForeName><Initials>GJ</Initials></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>J X</ForeName><Initials>JX</Initials></Author><Author ValidYN="Y"><LastName>Peiris</LastName><ForeName>J S M</ForeName><Initials>JS</Initials></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>H</ForeName><Initials>H</Initials></Author><Author 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Chine</li></country></list><tree><noCountry><name sortKey="Chen, H" sort="Chen, H" uniqKey="Chen H" first="H" last="Chen">H. Chen</name><name sortKey="Guan, Y" sort="Guan, Y" uniqKey="Guan Y" first="Y" last="Guan">Y. Guan</name><name sortKey="Peiris, J S M" sort="Peiris, J S M" uniqKey="Peiris J" first="J S M" last="Peiris">J S M. Peiris</name><name sortKey="Smith, G J D" sort="Smith, G J D" uniqKey="Smith G" first="G J D" last="Smith">G J D. Smith</name><name sortKey="Zhang, J X" sort="Zhang, J X" uniqKey="Zhang J" first="J X" last="Zhang">J X Zhang</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Vijaykrishna, D" sort="Vijaykrishna, D" uniqKey="Vijaykrishna D" first="D" last="Vijaykrishna">D. Vijaykrishna</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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