Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.
Identifieur interne : 001250 ( PubMed/Checkpoint ); précédent : 001249; suivant : 001251Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.
Auteurs : Brett E. Pickett [États-Unis] ; Douglas S. Greer ; Yun Zhang ; Lucy Stewart ; Liwei Zhou ; Guangyu Sun ; Zhiping Gu ; Sanjeev Kumar ; Sam Zaremba ; Christopher N. Larsen ; Wei Jen ; Edward B. Klem ; Richard H. ScheuermannSource :
- Viruses [ 1999-4915 ] ; 2012.
Descripteurs français
- KwdFr :
- MESH :
- Wicri :
- geographic : États-Unis.
English descriptors
- KwdEn :
- MESH :
Abstract
Several viruses within the Coronaviridae family have been categorized as either emerging or re-emerging human pathogens, with Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) being the most well known. The NIAID-sponsored Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses, including the entire Coronaviridae family. ViPR provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, host factor data, and other data types through an intuitive web-based search interface. Records returned from these queries can then be subjected to web-based analyses including: multiple sequence alignment, phylogenetic inference, sequence variation determination, BLAST comparison, and metadata-driven comparative genomics statistical analysis. Additional tools exist to display multiple sequence alignments, view phylogenetic trees, visualize 3D protein structures, transfer existing reference genome annotations to new genomes, and store or share results from any search or analysis within personal private 'Workbench' spaces for future access. All of the data and integrated analysis and visualization tools in ViPR are made available without charge as a service to the Coronaviridae research community to facilitate the research and development of diagnostics, prophylactics, vaccines and therapeutics against these human pathogens.
DOI: 10.3390/v4113209
PubMed: 23202522
Affiliations:
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pubmed:23202522Le document en format XML
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Scheuermann</name></author></analytic><series><title level="j">Viruses</title><idno type="eISSN">1999-4915</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Computational Biology (methods)</term><term>Coronavirus</term><term>Databases, Factual</term><term>Humans</term><term>Internet</term><term>National Institute of Allergy and Infectious Diseases (U.S.)</term><term>Research</term><term>Search Engine</term><term>Software</term><term>United States</term><term>User-Computer Interface</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données factuelles</term><term>Biologie informatique ()</term><term>Coronavirus</term><term>Humains</term><term>Interface utilisateur</term><term>Internet</term><term>Logiciel</term><term>Moteur de recherche</term><term>National Institute of Allergy and Infectious Diseases (USA)</term><term>Recherche</term><term>États-Unis d'Amérique</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>United States</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Computational Biology</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Coronavirus</term><term>Databases, Factual</term><term>Humans</term><term>Internet</term><term>National Institute of Allergy and Infectious Diseases (U.S.)</term><term>Research</term><term>Search Engine</term><term>Software</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données factuelles</term><term>Biologie informatique</term><term>Coronavirus</term><term>Humains</term><term>Interface utilisateur</term><term>Internet</term><term>Logiciel</term><term>Moteur de recherche</term><term>National Institute of Allergy and Infectious Diseases (USA)</term><term>Recherche</term><term>États-Unis d'Amérique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>États-Unis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Several viruses within the Coronaviridae family have been categorized as either emerging or re-emerging human pathogens, with Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) being the most well known. The NIAID-sponsored Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses, including the entire Coronaviridae family. ViPR provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, host factor data, and other data types through an intuitive web-based search interface. Records returned from these queries can then be subjected to web-based analyses including: multiple sequence alignment, phylogenetic inference, sequence variation determination, BLAST comparison, and metadata-driven comparative genomics statistical analysis. Additional tools exist to display multiple sequence alignments, view phylogenetic trees, visualize 3D protein structures, transfer existing reference genome annotations to new genomes, and store or share results from any search or analysis within personal private 'Workbench' spaces for future access. All of the data and integrated analysis and visualization tools in ViPR are made available without charge as a service to the Coronaviridae research community to facilitate the research and development of diagnostics, prophylactics, vaccines and therapeutics against these human pathogens.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23202522</PMID><DateCompleted><Year>2013</Year><Month>05</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1999-4915</ISSN><JournalIssue CitedMedium="Internet"><Volume>4</Volume><Issue>11</Issue><PubDate><Year>2012</Year><Month>Nov</Month><Day>19</Day></PubDate></JournalIssue><Title>Viruses</Title><ISOAbbreviation>Viruses</ISOAbbreviation></Journal><ArticleTitle>Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.</ArticleTitle><Pagination><MedlinePgn>3209-26</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3390/v4113209</ELocationID><Abstract><AbstractText>Several viruses within the Coronaviridae family have been categorized as either emerging or re-emerging human pathogens, with Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) being the most well known. The NIAID-sponsored Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses, including the entire Coronaviridae family. ViPR provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, host factor data, and other data types through an intuitive web-based search interface. Records returned from these queries can then be subjected to web-based analyses including: multiple sequence alignment, phylogenetic inference, sequence variation determination, BLAST comparison, and metadata-driven comparative genomics statistical analysis. Additional tools exist to display multiple sequence alignments, view phylogenetic trees, visualize 3D protein structures, transfer existing reference genome annotations to new genomes, and store or share results from any search or analysis within personal private 'Workbench' spaces for future access. All of the data and integrated analysis and visualization tools in ViPR are made available without charge as a service to the Coronaviridae research community to facilitate the research and development of diagnostics, prophylactics, vaccines and therapeutics against these human pathogens.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pickett</LastName><ForeName>Brett E</ForeName><Initials>BE</Initials><AffiliationInfo><Affiliation>J. 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Scheuermann</name><name sortKey="Stewart, Lucy" sort="Stewart, Lucy" uniqKey="Stewart L" first="Lucy" last="Stewart">Lucy Stewart</name><name sortKey="Sun, Guangyu" sort="Sun, Guangyu" uniqKey="Sun G" first="Guangyu" last="Sun">Guangyu Sun</name><name sortKey="Zaremba, Sam" sort="Zaremba, Sam" uniqKey="Zaremba S" first="Sam" last="Zaremba">Sam Zaremba</name><name sortKey="Zhang, Yun" sort="Zhang, Yun" uniqKey="Zhang Y" first="Yun" last="Zhang">Yun Zhang</name><name sortKey="Zhou, Liwei" sort="Zhou, Liwei" uniqKey="Zhou L" first="Liwei" last="Zhou">Liwei Zhou</name></noCountry><country name="États-Unis"><region name="Californie"><name sortKey="Pickett, Brett E" sort="Pickett, Brett E" uniqKey="Pickett B" first="Brett E" last="Pickett">Brett E. Pickett</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Checkpoint
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{{Explor lien
|wiki= Sante
|area= SrasV1
|flux= PubMed
|étape= Checkpoint
|type= RBID
|clé= pubmed:23202522
|texte= Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.
}}
Pour générer des pages wiki
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| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd \
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