Crystallization and preliminary X-ray crystallographic analysis of a nonstructural protein 15 mutant from Human coronavirus 229E.
Identifieur interne : 000E37 ( PubMed/Checkpoint ); précédent : 000E36; suivant : 000E38Crystallization and preliminary X-ray crystallographic analysis of a nonstructural protein 15 mutant from Human coronavirus 229E.
Auteurs : Tong Huo [République populaire de Chine] ; Xiang Liu [République populaire de Chine]Source :
- Acta crystallographica. Section F, Structural biology communications [ 2053-230X ] ; 2015.
Descripteurs français
- KwdFr :
- Chromatographie sur gel, Coronavirus humain 229E (), Cristallisation, Cristallographie aux rayons X, Données de séquences moléculaires, Masse moléculaire, Protéines mutantes (), Protéines virales non structurales (), Séquence d'acides aminés, Ultracentrifugation, Électrophorèse sur gel de polyacrylamide.
- MESH :
English descriptors
- KwdEn :
- MESH :
Abstract
Nonstructural protein 15 (nsp15), also called endoribonuclease, is a gene product of open reading frame 1b (ORF 1b) in coronaviruses. It is an important enzyme in the transcription/replication process involved in discontinuous negative-strand RNA synthesis. In this work, mutants of nsp15 from Human coronavirus 229E (HCoV-229E) were made based on structural analysis of the homologous nsp15s in Severe acute respiratory syndrome coronavirus (SARS-CoV) and Mouse hepatitis virus (MHV). The I26A/N52A mutant of nsp15 was overexpressed, purified and crystallized, and this mutant led to a trimeric form rather than hexamers or monomers. Crystals of trimeric nsp15 were obtained by the hanging-drop vapour-diffusion method using polyethylene glycol as a precipitant and diffracted to 2.5 Å resolution. The crystals belonged to space group C2221, with unit-cell parameters a = 85.9, b = 137.5, c = 423.1 Å, α = β = γ = 90°.
DOI: 10.1107/S2053230X15007359
PubMed: 26323302
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
pubmed:26323302Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Crystallization and preliminary X-ray crystallographic analysis of a nonstructural protein 15 mutant from Human coronavirus 229E.</title>
<author><name sortKey="Huo, Tong" sort="Huo, Tong" uniqKey="Huo T" first="Tong" last="Huo">Tong Huo</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Nankai University, Tianjin 300071, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Nankai University, Tianjin 300071</wicri:regionArea>
<placeName><settlement type="city">Tianjin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liu, Xiang" sort="Liu, Xiang" uniqKey="Liu X" first="Xiang" last="Liu">Xiang Liu</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Nankai University, Tianjin 300071, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Nankai University, Tianjin 300071</wicri:regionArea>
<placeName><settlement type="city">Tianjin</settlement>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="RBID">pubmed:26323302</idno>
<idno type="pmid">26323302</idno>
<idno type="doi">10.1107/S2053230X15007359</idno>
<idno type="wicri:Area/PubMed/Corpus">000D73</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000D73</idno>
<idno type="wicri:Area/PubMed/Curation">000D73</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000D73</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000E37</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000E37</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Crystallization and preliminary X-ray crystallographic analysis of a nonstructural protein 15 mutant from Human coronavirus 229E.</title>
<author><name sortKey="Huo, Tong" sort="Huo, Tong" uniqKey="Huo T" first="Tong" last="Huo">Tong Huo</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Nankai University, Tianjin 300071, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Nankai University, Tianjin 300071</wicri:regionArea>
<placeName><settlement type="city">Tianjin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liu, Xiang" sort="Liu, Xiang" uniqKey="Liu X" first="Xiang" last="Liu">Xiang Liu</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Nankai University, Tianjin 300071, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Nankai University, Tianjin 300071</wicri:regionArea>
<placeName><settlement type="city">Tianjin</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Acta crystallographica. Section F, Structural biology communications</title>
<idno type="eISSN">2053-230X</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Chromatography, Gel</term>
<term>Coronavirus 229E, Human (chemistry)</term>
<term>Crystallization</term>
<term>Crystallography, X-Ray</term>
<term>Electrophoresis, Polyacrylamide Gel</term>
<term>Molecular Sequence Data</term>
<term>Molecular Weight</term>
<term>Mutant Proteins (chemistry)</term>
<term>Ultracentrifugation</term>
<term>Viral Nonstructural Proteins (chemistry)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Chromatographie sur gel</term>
<term>Coronavirus humain 229E ()</term>
<term>Cristallisation</term>
<term>Cristallographie aux rayons X</term>
<term>Données de séquences moléculaires</term>
<term>Masse moléculaire</term>
<term>Protéines mutantes ()</term>
<term>Protéines virales non structurales ()</term>
<term>Séquence d'acides aminés</term>
<term>Ultracentrifugation</term>
<term>Électrophorèse sur gel de polyacrylamide</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Mutant Proteins</term>
<term>Viral Nonstructural Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Coronavirus 229E, Human</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Chromatography, Gel</term>
<term>Crystallization</term>
<term>Crystallography, X-Ray</term>
<term>Electrophoresis, Polyacrylamide Gel</term>
<term>Molecular Sequence Data</term>
<term>Molecular Weight</term>
<term>Ultracentrifugation</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Chromatographie sur gel</term>
<term>Coronavirus humain 229E</term>
<term>Cristallisation</term>
<term>Cristallographie aux rayons X</term>
<term>Données de séquences moléculaires</term>
<term>Masse moléculaire</term>
<term>Protéines mutantes</term>
<term>Protéines virales non structurales</term>
<term>Séquence d'acides aminés</term>
<term>Ultracentrifugation</term>
<term>Électrophorèse sur gel de polyacrylamide</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Nonstructural protein 15 (nsp15), also called endoribonuclease, is a gene product of open reading frame 1b (ORF 1b) in coronaviruses. It is an important enzyme in the transcription/replication process involved in discontinuous negative-strand RNA synthesis. In this work, mutants of nsp15 from Human coronavirus 229E (HCoV-229E) were made based on structural analysis of the homologous nsp15s in Severe acute respiratory syndrome coronavirus (SARS-CoV) and Mouse hepatitis virus (MHV). The I26A/N52A mutant of nsp15 was overexpressed, purified and crystallized, and this mutant led to a trimeric form rather than hexamers or monomers. Crystals of trimeric nsp15 were obtained by the hanging-drop vapour-diffusion method using polyethylene glycol as a precipitant and diffracted to 2.5 Å resolution. The crystals belonged to space group C2221, with unit-cell parameters a = 85.9, b = 137.5, c = 423.1 Å, α = β = γ = 90°. </div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26323302</PMID>
<DateCompleted><Year>2016</Year>
<Month>06</Month>
<Day>27</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>01</Month>
<Day>09</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2053-230X</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>71</Volume>
<Issue>Pt 9</Issue>
<PubDate><Year>2015</Year>
<Month>Sep</Month>
</PubDate>
</JournalIssue>
<Title>Acta crystallographica. Section F, Structural biology communications</Title>
<ISOAbbreviation>Acta Crystallogr F Struct Biol Commun</ISOAbbreviation>
</Journal>
<ArticleTitle>Crystallization and preliminary X-ray crystallographic analysis of a nonstructural protein 15 mutant from Human coronavirus 229E.</ArticleTitle>
<Pagination><MedlinePgn>1156-60</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1107/S2053230X15007359</ELocationID>
<Abstract><AbstractText>Nonstructural protein 15 (nsp15), also called endoribonuclease, is a gene product of open reading frame 1b (ORF 1b) in coronaviruses. It is an important enzyme in the transcription/replication process involved in discontinuous negative-strand RNA synthesis. In this work, mutants of nsp15 from Human coronavirus 229E (HCoV-229E) were made based on structural analysis of the homologous nsp15s in Severe acute respiratory syndrome coronavirus (SARS-CoV) and Mouse hepatitis virus (MHV). The I26A/N52A mutant of nsp15 was overexpressed, purified and crystallized, and this mutant led to a trimeric form rather than hexamers or monomers. Crystals of trimeric nsp15 were obtained by the hanging-drop vapour-diffusion method using polyethylene glycol as a precipitant and diffracted to 2.5 Å resolution. The crystals belonged to space group C2221, with unit-cell parameters a = 85.9, b = 137.5, c = 423.1 Å, α = β = γ = 90°. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Huo</LastName>
<ForeName>Tong</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>College of Life Sciences, Nankai University, Tianjin 300071, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Xiang</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>College of Life Sciences, Nankai University, Tianjin 300071, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>08</Month>
<Day>25</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Acta Crystallogr F Struct Biol Commun</MedlineTA>
<NlmUniqueID>101620319</NlmUniqueID>
<ISSNLinking>2053-230X</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D050505">Mutant Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D017361">Viral Nonstructural Proteins</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002850" MajorTopicYN="N">Chromatography, Gel</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D028941" MajorTopicYN="N">Coronavirus 229E, Human</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003460" MajorTopicYN="N">Crystallization</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018360" MajorTopicYN="N">Crystallography, X-Ray</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004591" MajorTopicYN="N">Electrophoresis, Polyacrylamide Gel</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008970" MajorTopicYN="N">Molecular Weight</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D050505" MajorTopicYN="N">Mutant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014461" MajorTopicYN="N">Ultracentrifugation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017361" MajorTopicYN="N">Viral Nonstructural Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Human coronavirus 229E</Keyword>
<Keyword MajorTopicYN="N">coronaviruses</Keyword>
<Keyword MajorTopicYN="N">endoribonuclease</Keyword>
<Keyword MajorTopicYN="N">nonstructural protein 15</Keyword>
<Keyword MajorTopicYN="N">trimeric form</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year>
<Month>12</Month>
<Day>26</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2015</Year>
<Month>04</Month>
<Day>14</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>9</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>9</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2016</Year>
<Month>6</Month>
<Day>28</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">26323302</ArticleId>
<ArticleId IdType="pii">S2053230X15007359</ArticleId>
<ArticleId IdType="doi">10.1107/S2053230X15007359</ArticleId>
<ArticleId IdType="pmc">PMC4555923</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Acta Crystallogr D Biol Crystallogr. 2001 Dec;57(Pt 12):1755-62</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11717487</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Adv Exp Med Biol. 2001;494:1-17</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11774451</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2004 Aug 24;101(34):12694-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15304651</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2004 Nov;78(22):12218-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15507608</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Top Microbiol Immunol. 2005;287:57-94</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15609509</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2006 Feb;80(4):1653-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16439522</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2006 Aug;80(16):7909-17</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16873248</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):11892-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16882730</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2007 Jun;81(12):6700-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17409150</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2008 Feb 8;283(6):3655-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18045871</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Analyst. 2014 Jan 7;139(1):79-92</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24244936</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Methods Enzymol. 1997;276:307-26</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27754618</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Soc Exp Biol Med. 1966 Jan;121(1):190-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">4285768</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1967 Apr;57(4):933-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">5231356</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Med Virol. 1994 Oct;44(2):152-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7852955</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Virology. 1993 Aug;195(2):680-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">8337838</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Adv Exp Med Biol. 1995;380:499-506</Citation>
<ArticleIdList><ArticleId IdType="pubmed">8830530</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Arch Virol. 1997;142(3):629-33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9349308</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Tianjin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Huo, Tong" sort="Huo, Tong" uniqKey="Huo T" first="Tong" last="Huo">Tong Huo</name>
</noRegion>
<name sortKey="Liu, Xiang" sort="Liu, Xiang" uniqKey="Liu X" first="Xiang" last="Liu">Xiang Liu</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000E37 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd -nk 000E37 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= SrasV1 |flux= PubMed |étape= Checkpoint |type= RBID |clé= pubmed:26323302 |texte= Crystallization and preliminary X-ray crystallographic analysis of a nonstructural protein 15 mutant from Human coronavirus 229E. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/RBID.i -Sk "pubmed:26323302" \ | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd \ | NlmPubMed2Wicri -a SrasV1
This area was generated with Dilib version V0.6.33. |