Molecular Evolution of Human Coronavirus Genomes.
Identifieur interne : 000A95 ( PubMed/Checkpoint ); précédent : 000A94; suivant : 000A96Molecular Evolution of Human Coronavirus Genomes.
Auteurs : Diego Forni [Italie] ; Rachele Cagliani [Italie] ; Mario Clerici [Italie] ; Manuela Sironi [Italie]Source :
- Trends in microbiology [ 1878-4380 ] ; 2017.
Descripteurs français
- KwdFr :
- Coronavirus du syndrome respiratoire du Moyen-Orient (génétique), Génome viral (génétique), Humains, Hémagglutinines virales (génétique), Hémagglutinines virales (métabolisme), Phosphodiesterases (génétique), Phosphodiesterases (métabolisme), Protéines de fusion virale (génétique), Protéines de fusion virale (métabolisme), Protéines virales régulatrices ou accessoires (génétique), Protéines virales régulatrices ou accessoires (métabolisme), Spécificité d'hôte (génétique), Virus du SRAS (génétique), Évolution moléculaire.
- MESH :
- génétique : Coronavirus du syndrome respiratoire du Moyen-Orient, Génome viral, Hémagglutinines virales, Phosphodiesterases, Protéines de fusion virale, Protéines virales régulatrices ou accessoires, Spécificité d'hôte, Virus du SRAS.
- métabolisme : Hémagglutinines virales, Phosphodiesterases, Protéines de fusion virale, Protéines virales régulatrices ou accessoires.
- Humains, Évolution moléculaire.
English descriptors
- KwdEn :
- Evolution, Molecular, Genome, Viral (genetics), Hemagglutinins, Viral (genetics), Hemagglutinins, Viral (metabolism), Host Specificity (genetics), Humans, Middle East Respiratory Syndrome Coronavirus (genetics), Phosphoric Diester Hydrolases (genetics), Phosphoric Diester Hydrolases (metabolism), SARS Virus (genetics), Viral Fusion Proteins (genetics), Viral Fusion Proteins (metabolism), Viral Regulatory and Accessory Proteins (genetics), Viral Regulatory and Accessory Proteins (metabolism).
- MESH :
- chemical , genetics : Hemagglutinins, Viral, Phosphoric Diester Hydrolases, Viral Fusion Proteins, Viral Regulatory and Accessory Proteins.
- genetics : Genome, Viral, Host Specificity, Middle East Respiratory Syndrome Coronavirus, SARS Virus.
- chemical , metabolism : Hemagglutinins, Viral, Phosphoric Diester Hydrolases, Viral Fusion Proteins, Viral Regulatory and Accessory Proteins.
- Evolution, Molecular, Humans.
Abstract
Human coronaviruses (HCoVs), including SARS-CoV and MERS-CoV, are zoonotic pathogens that originated in wild animals. HCoVs have large genomes that encode a fixed array of structural and nonstructural components, as well as a variety of accessory proteins that differ in number and sequence even among closely related CoVs. Thus, in addition to recombination and mutation, HCoV genomes evolve through gene gains and losses. In this review we summarize recent findings on the molecular evolution of HCoV genomes, with special attention to recombination and adaptive events that generated new viral species and contributed to host shifts and to HCoV emergence. VIDEO ABSTRACT.
DOI: 10.1016/j.tim.2016.09.001
PubMed: 27743750
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
pubmed:27743750Le document en format XML
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HCoVs have large genomes that encode a fixed array of structural and nonstructural components, as well as a variety of accessory proteins that differ in number and sequence even among closely related CoVs. Thus, in addition to recombination and mutation, HCoV genomes evolve through gene gains and losses. In this review we summarize recent findings on the molecular evolution of HCoV genomes, with special attention to recombination and adaptive events that generated new viral species and contributed to host shifts and to HCoV emergence. VIDEO ABSTRACT.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27743750</PMID><DateCompleted><Year>2017</Year><Month>11</Month><Day>24</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>07</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1878-4380</ISSN><JournalIssue CitedMedium="Internet"><Volume>25</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>01</Month></PubDate></JournalIssue><Title>Trends in microbiology</Title><ISOAbbreviation>Trends Microbiol.</ISOAbbreviation></Journal><ArticleTitle>Molecular Evolution of Human Coronavirus Genomes.</ArticleTitle><Pagination><MedlinePgn>35-48</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0966-842X(16)30133-0</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.tim.2016.09.001</ELocationID><Abstract><AbstractText>Human coronaviruses (HCoVs), including SARS-CoV and MERS-CoV, are zoonotic pathogens that originated in wild animals. HCoVs have large genomes that encode a fixed array of structural and nonstructural components, as well as a variety of accessory proteins that differ in number and sequence even among closely related CoVs. Thus, in addition to recombination and mutation, HCoV genomes evolve through gene gains and losses. In this review we summarize recent findings on the molecular evolution of HCoV genomes, with special attention to recombination and adaptive events that generated new viral species and contributed to host shifts and to HCoV emergence. VIDEO ABSTRACT.</AbstractText><CopyrightInformation>Copyright © 2016 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Forni</LastName><ForeName>Diego</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Scientific Institute IRCCS E. MEDEA, Bioinformatics, Bosisio Parini, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cagliani</LastName><ForeName>Rachele</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Scientific Institute IRCCS E. MEDEA, Bioinformatics, Bosisio Parini, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Clerici</LastName><ForeName>Mario</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Physiopathology and Transplantation, University of Milan, Milan, Italy; Don C. Gnocchi Foundation ONLUS, IRCCS, Milan, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sironi</LastName><ForeName>Manuela</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Scientific Institute IRCCS E. MEDEA, Bioinformatics, Bosisio Parini, Italy. Electronic address: manuela.sironi@bp.lnf.it.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>10</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Trends Microbiol</MedlineTA><NlmUniqueID>9310916</NlmUniqueID><ISSNLinking>0966-842X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006389">Hemagglutinins, Viral</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014760">Viral Fusion Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D054334">Viral Regulatory and Accessory 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Specificity</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D065207" MajorTopicYN="N">Middle East Respiratory Syndrome Coronavirus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010727" MajorTopicYN="N">Phosphoric Diester Hydrolases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045473" MajorTopicYN="N">SARS Virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014760" MajorTopicYN="N">Viral Fusion Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054334" MajorTopicYN="N">Viral Regulatory and Accessory Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">gene gain/loss</Keyword><Keyword MajorTopicYN="Y">host shift</Keyword><Keyword MajorTopicYN="Y">human coronavirus</Keyword><Keyword MajorTopicYN="Y">molecular evolution</Keyword><Keyword MajorTopicYN="Y">positive selection</Keyword><Keyword MajorTopicYN="Y">recombination</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>07</Month><Day>04</Day></PubMedPubDate><PubMedPubDate 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