Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2).

Identifieur interne : 000162 ( PubMed/Checkpoint ); précédent : 000161; suivant : 000163

Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2).

Auteurs : Ruiyun Li [Royaume-Uni] ; Sen Pei [États-Unis] ; Bin Chen [États-Unis] ; Yimeng Song [Hong Kong] ; Tao Zhang [République populaire de Chine] ; Wan Yang [États-Unis] ; Jeffrey Shaman [États-Unis]

Source :

RBID : pubmed:32179701

Abstract

Estimation of the prevalence and contagiousness of undocumented novel coronavirus (SARS-CoV2) infections is critical for understanding the overall prevalence and pandemic potential of this disease. Here we use observations of reported infection within China, in conjunction with mobility data, a networked dynamic metapopulation model and Bayesian inference, to infer critical epidemiological characteristics associated with SARS-CoV2, including the fraction of undocumented infections and their contagiousness. We estimate 86% of all infections were undocumented (95% CI: [82%-90%]) prior to 23 January 2020 travel restrictions. Per person, the transmission rate of undocumented infections was 55% of documented infections ([46%-62%]), yet, due to their greater numbers, undocumented infections were the infection source for 79% of documented cases. These findings explain the rapid geographic spread of SARS-CoV2 and indicate containment of this virus will be particularly challenging.

DOI: 10.1126/science.abb3221
PubMed: 32179701


Affiliations:


Links toward previous steps (curation, corpus...)


Links to Exploration step

pubmed:32179701

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2).</title>
<author>
<name sortKey="Li, Ruiyun" sort="Li, Ruiyun" uniqKey="Li R" first="Ruiyun" last="Li">Ruiyun Li</name>
<affiliation wicri:level="1">
<nlm:affiliation>MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine, Imperial College London, London W2 1PG, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine, Imperial College London, London W2 1PG</wicri:regionArea>
<wicri:noRegion>London W2 1PG</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Pei, Sen" sort="Pei, Sen" uniqKey="Pei S" first="Sen" last="Pei">Sen Pei</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. sp3449@cumc.columbia.edu jls106@cumc.columbia.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
<settlement type="city">New York</settlement>
</placeName>
<orgName type="university">Université Columbia</orgName>
</affiliation>
</author>
<author>
<name sortKey="Chen, Bin" sort="Chen, Bin" uniqKey="Chen B" first="Bin" last="Chen">Bin Chen</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Land, Air and Water Resources, University of California, Davis, Davis, CA 95616, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Land, Air and Water Resources, University of California, Davis, Davis, CA 95616</wicri:regionArea>
<placeName>
<region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Song, Yimeng" sort="Song, Yimeng" uniqKey="Song Y" first="Yimeng" last="Song">Yimeng Song</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Urban Planning and Design, The University of Hong Kong, Hong Kong.</nlm:affiliation>
<country xml:lang="fr">Hong Kong</country>
<wicri:regionArea>Department of Urban Planning and Design, The University of Hong Kong</wicri:regionArea>
<wicri:noRegion>The University of Hong Kong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Tao" sort="Zhang, Tao" uniqKey="Zhang T" first="Tao" last="Zhang">Tao Zhang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing 10084, P. R. China.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country>
<wicri:regionArea>Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing 10084</wicri:regionArea>
<placeName>
<settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Yang, Wan" sort="Yang, Wan" uniqKey="Yang W" first="Wan" last="Yang">Wan Yang</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
<settlement type="city">New York</settlement>
</placeName>
<orgName type="university">Université Columbia</orgName>
</affiliation>
</author>
<author>
<name sortKey="Shaman, Jeffrey" sort="Shaman, Jeffrey" uniqKey="Shaman J" first="Jeffrey" last="Shaman">Jeffrey Shaman</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. sp3449@cumc.columbia.edu jls106@cumc.columbia.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
<settlement type="city">New York</settlement>
</placeName>
<orgName type="university">Université Columbia</orgName>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:32179701</idno>
<idno type="pmid">32179701</idno>
<idno type="doi">10.1126/science.abb3221</idno>
<idno type="wicri:Area/PubMed/Corpus">000600</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000600</idno>
<idno type="wicri:Area/PubMed/Curation">000600</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000600</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000162</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000162</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2).</title>
<author>
<name sortKey="Li, Ruiyun" sort="Li, Ruiyun" uniqKey="Li R" first="Ruiyun" last="Li">Ruiyun Li</name>
<affiliation wicri:level="1">
<nlm:affiliation>MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine, Imperial College London, London W2 1PG, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine, Imperial College London, London W2 1PG</wicri:regionArea>
<wicri:noRegion>London W2 1PG</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Pei, Sen" sort="Pei, Sen" uniqKey="Pei S" first="Sen" last="Pei">Sen Pei</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. sp3449@cumc.columbia.edu jls106@cumc.columbia.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
<settlement type="city">New York</settlement>
</placeName>
<orgName type="university">Université Columbia</orgName>
</affiliation>
</author>
<author>
<name sortKey="Chen, Bin" sort="Chen, Bin" uniqKey="Chen B" first="Bin" last="Chen">Bin Chen</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Land, Air and Water Resources, University of California, Davis, Davis, CA 95616, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Land, Air and Water Resources, University of California, Davis, Davis, CA 95616</wicri:regionArea>
<placeName>
<region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Song, Yimeng" sort="Song, Yimeng" uniqKey="Song Y" first="Yimeng" last="Song">Yimeng Song</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Urban Planning and Design, The University of Hong Kong, Hong Kong.</nlm:affiliation>
<country xml:lang="fr">Hong Kong</country>
<wicri:regionArea>Department of Urban Planning and Design, The University of Hong Kong</wicri:regionArea>
<wicri:noRegion>The University of Hong Kong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Tao" sort="Zhang, Tao" uniqKey="Zhang T" first="Tao" last="Zhang">Tao Zhang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing 10084, P. R. China.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country>
<wicri:regionArea>Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing 10084</wicri:regionArea>
<placeName>
<settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Yang, Wan" sort="Yang, Wan" uniqKey="Yang W" first="Wan" last="Yang">Wan Yang</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
<settlement type="city">New York</settlement>
</placeName>
<orgName type="university">Université Columbia</orgName>
</affiliation>
</author>
<author>
<name sortKey="Shaman, Jeffrey" sort="Shaman, Jeffrey" uniqKey="Shaman J" first="Jeffrey" last="Shaman">Jeffrey Shaman</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. sp3449@cumc.columbia.edu jls106@cumc.columbia.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
<settlement type="city">New York</settlement>
</placeName>
<orgName type="university">Université Columbia</orgName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Science (New York, N.Y.)</title>
<idno type="eISSN">1095-9203</idno>
<imprint>
<date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Estimation of the prevalence and contagiousness of undocumented novel coronavirus (SARS-CoV2) infections is critical for understanding the overall prevalence and pandemic potential of this disease. Here we use observations of reported infection within China, in conjunction with mobility data, a networked dynamic metapopulation model and Bayesian inference, to infer critical epidemiological characteristics associated with SARS-CoV2, including the fraction of undocumented infections and their contagiousness. We estimate 86% of all infections were undocumented (95% CI: [82%-90%]) prior to 23 January 2020 travel restrictions. Per person, the transmission rate of undocumented infections was 55% of documented infections ([46%-62%]), yet, due to their greater numbers, undocumented infections were the infection source for 79% of documented cases. These findings explain the rapid geographic spread of SARS-CoV2 and indicate containment of this virus will be particularly challenging.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="Publisher" Owner="NLM">
<PMID Version="1">32179701</PMID>
<DateRevised>
<Year>2020</Year>
<Month>03</Month>
<Day>27</Day>
</DateRevised>
<Article PubModel="Print-Electronic">
<Journal>
<ISSN IssnType="Electronic">1095-9203</ISSN>
<JournalIssue CitedMedium="Internet">
<PubDate>
<Year>2020</Year>
<Month>Mar</Month>
<Day>16</Day>
</PubDate>
</JournalIssue>
<Title>Science (New York, N.Y.)</Title>
<ISOAbbreviation>Science</ISOAbbreviation>
</Journal>
<ArticleTitle>Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2).</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">eabb3221</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1126/science.abb3221</ELocationID>
<Abstract>
<AbstractText>Estimation of the prevalence and contagiousness of undocumented novel coronavirus (SARS-CoV2) infections is critical for understanding the overall prevalence and pandemic potential of this disease. Here we use observations of reported infection within China, in conjunction with mobility data, a networked dynamic metapopulation model and Bayesian inference, to infer critical epidemiological characteristics associated with SARS-CoV2, including the fraction of undocumented infections and their contagiousness. We estimate 86% of all infections were undocumented (95% CI: [82%-90%]) prior to 23 January 2020 travel restrictions. Per person, the transmission rate of undocumented infections was 55% of documented infections ([46%-62%]), yet, due to their greater numbers, undocumented infections were the infection source for 79% of documented cases. These findings explain the rapid geographic spread of SARS-CoV2 and indicate containment of this virus will be particularly challenging.</AbstractText>
<CopyrightInformation>Copyright © 2020, American Association for the Advancement of Science.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y" EqualContrib="Y">
<LastName>Li</LastName>
<ForeName>Ruiyun</ForeName>
<Initials>R</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0001-8927-9965</Identifier>
<AffiliationInfo>
<Affiliation>MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine, Imperial College London, London W2 1PG, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y" EqualContrib="Y">
<LastName>Pei</LastName>
<ForeName>Sen</ForeName>
<Initials>S</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0002-7072-2995</Identifier>
<AffiliationInfo>
<Affiliation>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. sp3449@cumc.columbia.edu jls106@cumc.columbia.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y" EqualContrib="Y">
<LastName>Chen</LastName>
<ForeName>Bin</ForeName>
<Initials>B</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0003-3496-2876</Identifier>
<AffiliationInfo>
<Affiliation>Department of Land, Air and Water Resources, University of California, Davis, Davis, CA 95616, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Song</LastName>
<ForeName>Yimeng</ForeName>
<Initials>Y</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0001-9558-1220</Identifier>
<AffiliationInfo>
<Affiliation>Department of Urban Planning and Design, The University of Hong Kong, Hong Kong.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zhang</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo>
<Affiliation>Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing 10084, P. R. China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yang</LastName>
<ForeName>Wan</ForeName>
<Initials>W</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0002-7555-9728</Identifier>
<AffiliationInfo>
<Affiliation>Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Shaman</LastName>
<ForeName>Jeffrey</ForeName>
<Initials>J</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0002-7216-7809</Identifier>
<AffiliationInfo>
<Affiliation>Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. sp3449@cumc.columbia.edu jls106@cumc.columbia.edu.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2020</Year>
<Month>03</Month>
<Day>16</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>Science</MedlineTA>
<NlmUniqueID>0404511</NlmUniqueID>
<ISSNLinking>0036-8075</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2020</Year>
<Month>02</Month>
<Day>15</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2020</Year>
<Month>03</Month>
<Day>12</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2020</Year>
<Month>3</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2020</Year>
<Month>3</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2020</Year>
<Month>3</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>aheadofprint</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">32179701</ArticleId>
<ArticleId IdType="pii">science.abb3221</ArticleId>
<ArticleId IdType="doi">10.1126/science.abb3221</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Hong Kong</li>
<li>Royaume-Uni</li>
<li>République populaire de Chine</li>
<li>États-Unis</li>
</country>
<region>
<li>Californie</li>
<li>État de New York</li>
</region>
<settlement>
<li>New York</li>
<li>Pékin</li>
</settlement>
<orgName>
<li>Université Columbia</li>
</orgName>
</list>
<tree>
<country name="Royaume-Uni">
<noRegion>
<name sortKey="Li, Ruiyun" sort="Li, Ruiyun" uniqKey="Li R" first="Ruiyun" last="Li">Ruiyun Li</name>
</noRegion>
</country>
<country name="États-Unis">
<region name="État de New York">
<name sortKey="Pei, Sen" sort="Pei, Sen" uniqKey="Pei S" first="Sen" last="Pei">Sen Pei</name>
</region>
<name sortKey="Chen, Bin" sort="Chen, Bin" uniqKey="Chen B" first="Bin" last="Chen">Bin Chen</name>
<name sortKey="Shaman, Jeffrey" sort="Shaman, Jeffrey" uniqKey="Shaman J" first="Jeffrey" last="Shaman">Jeffrey Shaman</name>
<name sortKey="Yang, Wan" sort="Yang, Wan" uniqKey="Yang W" first="Wan" last="Yang">Wan Yang</name>
</country>
<country name="Hong Kong">
<noRegion>
<name sortKey="Song, Yimeng" sort="Song, Yimeng" uniqKey="Song Y" first="Yimeng" last="Song">Yimeng Song</name>
</noRegion>
</country>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Zhang, Tao" sort="Zhang, Tao" uniqKey="Zhang T" first="Tao" last="Zhang">Tao Zhang</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000162 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd -nk 000162 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    PubMed
   |étape=   Checkpoint
   |type=    RBID
   |clé=     pubmed:32179701
   |texte=   Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2).
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/RBID.i   -Sk "pubmed:32179701" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd   \
       | NlmPubMed2Wicri -a SrasV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021